Wall clock time and date at job start Mon Mar 30 2020 00:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00553 * 2 1 4 4 H 1.48492 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47075 * 300.00170 * 3 2 1 6 6 H 1.48496 * 109.47036 * 59.99764 * 3 2 1 7 7 C 1.37881 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00224 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.53512 * 114.17180 * 180.02562 * 9 7 2 11 11 N 1.47475 * 87.93223 * 220.14079 * 10 9 7 12 12 C 1.46904 * 111.00518 * 138.70473 * 11 10 9 13 13 C 1.50702 * 109.47471 * 167.78670 * 12 11 10 14 14 C 1.37976 * 119.72854 * 101.52973 * 13 12 11 15 15 C 1.38219 * 119.77123 * 180.02562 * 14 13 12 16 16 C 1.37977 * 119.77083 * 0.11114 * 15 14 13 17 17 C 1.38864 * 120.54729 * 359.97438 * 16 15 14 18 18 C 1.37714 * 119.67833 * 359.78427 * 17 16 15 19 19 C 1.50635 * 122.55600 * 180.67825 * 18 17 16 20 20 C 1.52739 * 110.58464 * 342.21108 * 19 18 17 21 21 C 1.53322 * 108.38629 * 51.12016 * 20 19 18 22 22 C 1.50623 * 117.76224 * 179.73750 * 17 16 15 23 23 C 1.47476 * 87.84122 * 27.00760 * 11 10 9 24 24 H 0.97001 * 119.99670 * 0.02562 * 1 2 3 25 25 H 1.09002 * 113.25421 * 312.95094 * 9 7 2 26 26 H 1.09002 * 113.47977 * 105.36713 * 10 9 7 27 27 H 1.09008 * 113.52852 * 334.91278 * 10 9 7 28 28 H 1.09004 * 109.46843 * 47.78478 * 12 11 10 29 29 H 1.09000 * 109.46812 * 287.78688 * 12 11 10 30 30 H 1.08000 * 120.11313 * 0.02562 * 14 13 12 31 31 H 1.07990 * 120.11349 * 180.14271 * 15 14 13 32 32 H 1.08002 * 119.72358 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.25652 * 102.49460 * 19 18 17 34 34 H 1.08999 * 109.25526 * 221.96204 * 19 18 17 35 35 H 1.08991 * 109.68814 * 291.39136 * 20 19 18 36 36 H 1.09005 * 109.67690 * 170.83403 * 20 19 18 37 37 H 1.08998 * 109.68102 * 170.39311 * 21 20 19 38 38 H 1.09003 * 109.68414 * 49.83873 * 21 20 19 39 39 H 1.09003 * 109.25155 * 41.98984 * 22 17 16 40 40 H 1.08998 * 109.22328 * 282.54342 * 22 17 16 41 41 H 1.08996 * 113.47422 * 87.75533 * 23 11 10 42 42 H 1.09001 * 113.47957 * 218.22692 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.1495 -3.7439 -0.0005 11 7 1.2048 -4.3602 -0.9506 12 6 1.9202 -5.0902 -2.0057 13 6 0.9460 -5.9457 -2.7739 14 6 0.4899 -5.5250 -4.0063 15 6 -0.4041 -6.3086 -4.7114 16 6 -0.8360 -7.5052 -4.1769 17 6 -0.3795 -7.9295 -2.9360 18 6 0.5150 -7.1511 -2.2358 19 6 1.0633 -7.5555 -0.8924 20 6 0.1939 -8.6419 -0.2625 21 6 0.0018 -9.7638 -1.2898 22 6 -0.8965 -9.2427 -2.4098 23 6 0.8516 -2.9993 -1.3959 24 1 -0.4850 0.8401 -0.0004 25 1 0.4451 -2.5308 0.7328 26 1 2.1888 -4.2511 0.9635 27 1 3.1381 -3.5669 -0.4243 28 1 2.6838 -5.7244 -1.5551 29 1 2.3922 -4.3790 -2.6836 30 1 0.8302 -4.5866 -4.4185 31 1 -0.7629 -5.9858 -5.6774 32 1 -1.5348 -8.1167 -4.7284 33 1 2.0777 -7.9345 -1.0174 34 1 1.0830 -6.6859 -0.2355 35 1 -0.7751 -8.2244 0.0106 36 1 0.6871 -9.0378 0.6254 37 1 -0.4686 -10.6229 -0.8115 38 1 0.9686 -10.0552 -1.7003 39 1 -0.9191 -9.9709 -3.2206 40 1 -1.9065 -9.1024 -2.0246 41 1 1.4934 -2.6228 -2.1923 42 1 -0.2091 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232634261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:50 Heat of formation + Delta-G solvation = 37.686968 kcal Electronic energy + Delta-G solvation = -20657.770117 eV Core-core repulsion = 17795.386630 eV Total energy + Delta-G solvation = -2862.383487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13077 -38.65639 -35.94634 -33.51377 -32.37317 -30.08292 -29.76805 -28.01973 -25.50080 -24.73994 -23.57894 -22.67809 -22.53288 -20.21635 -19.25853 -18.56719 -16.63575 -16.12440 -15.47321 -15.26622 -14.86425 -14.55634 -14.07890 -13.90825 -13.83484 -13.63774 -13.30553 -12.76934 -12.41489 -12.29768 -12.03625 -11.84088 -11.61574 -11.38110 -11.28918 -11.05610 -10.96858 -10.82468 -10.59602 -10.31877 -10.28574 -10.09304 -9.70206 -9.28580 -8.94208 -8.46397 -8.31232 -8.24071 -7.96250 -6.05485 -4.10082 1.59771 1.63672 3.27395 3.35844 3.39193 3.93340 4.40184 4.71930 4.76156 4.92769 4.99357 5.12712 5.22077 5.25068 5.27923 5.37201 5.45927 5.56008 5.59891 5.64715 5.71753 5.86090 5.90615 5.92312 6.05350 6.06446 6.14075 6.23977 6.29352 6.34685 6.37547 6.48480 6.49258 6.67496 6.73157 6.74750 6.80185 6.97929 7.16976 7.22583 7.28151 7.72929 7.91355 8.08513 8.37512 8.93493 9.55024 11.04076 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.004200 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.642157 B = 6665.519115 C = 7165.368286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.041 3.959 10 C -0.006 4.006 11 N -0.476 5.476 12 C 0.054 3.946 13 C -0.061 4.061 14 C -0.116 4.116 15 C -0.125 4.125 16 C -0.130 4.130 17 C -0.085 4.085 18 C -0.054 4.054 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.077 4.077 23 C 0.008 3.992 24 H 0.261 0.739 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 -17.113 -5.733 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.022 3.978 10 C -0.135 4.135 11 N -0.198 5.198 12 C -0.074 4.074 13 C -0.061 4.061 14 C -0.134 4.134 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.085 4.085 18 C -0.054 4.054 19 C -0.122 4.122 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.114 4.114 23 C -0.121 4.121 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.536 -17.482 -5.518 18.340 hybrid contribution 0.999 1.530 -0.682 1.951 sum 0.463 -15.951 -6.200 17.120 Atomic orbital electron populations 1.69983 1.05992 1.26614 1.49692 1.25019 0.94802 0.99151 0.94622 0.86573 0.80177 0.83827 0.77652 1.19726 1.21011 1.20898 1.21074 0.92758 0.90270 1.51325 0.92400 1.20091 0.94251 0.90796 0.92617 1.24027 0.95782 0.97776 0.95915 1.68868 1.26903 1.14111 1.09893 1.21637 0.94330 0.96765 0.94653 1.19840 0.97984 0.94222 0.94057 1.20986 0.98066 0.99414 0.94963 1.20944 0.98393 0.95082 0.99841 1.21011 1.00888 0.97113 0.95790 1.19533 0.97865 0.96467 0.94668 1.19384 0.96608 0.93657 0.95787 1.20548 0.98065 0.99734 0.93854 1.21536 1.00640 0.95755 0.97634 1.21548 0.99863 0.97873 0.96360 1.20418 0.99219 0.93656 0.98061 1.24093 1.00191 0.86620 1.01193 0.92927 0.91849 0.92005 0.92861 0.91131 0.93454 0.86457 0.86555 0.86831 0.91554 0.88648 0.91569 0.91778 0.91873 0.91905 0.91335 0.90964 0.92951 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.26 55.43 0.74 -24.88 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.00 8.83 -34.44 -0.30 -14.30 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 1.04 3.76 -91.24 -0.34 0.70 16 10 C -0.01 -0.13 7.23 -7.54 -0.05 -0.19 16 11 N -0.48 -9.54 5.38 -246.08 -1.32 -10.87 16 12 C 0.05 0.94 4.13 -4.97 -0.02 0.91 16 13 C -0.06 -0.99 5.47 -104.49 -0.57 -1.56 16 14 C -0.12 -1.80 9.65 -39.68 -0.38 -2.19 16 15 C -0.12 -1.72 10.05 -39.68 -0.40 -2.12 16 16 C -0.13 -1.71 9.61 -39.45 -0.38 -2.09 16 17 C -0.09 -1.17 5.74 -104.62 -0.60 -1.77 16 18 C -0.05 -0.82 5.74 -104.62 -0.60 -1.42 16 19 C -0.09 -1.16 4.57 -28.05 -0.13 -1.29 16 20 C -0.12 -1.36 5.98 -26.70 -0.16 -1.52 16 21 C -0.12 -1.19 5.98 -26.70 -0.16 -1.35 16 22 C -0.08 -0.82 5.67 -28.05 -0.16 -0.98 16 23 C 0.01 0.18 7.28 -7.54 -0.05 0.13 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.08 7.87 -51.92 -0.41 0.67 16 28 H 0.07 1.12 7.25 -51.93 -0.38 0.74 16 29 H 0.05 0.83 7.09 -51.93 -0.37 0.46 16 30 H 0.12 1.76 8.01 -52.49 -0.42 1.34 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.21 8.05 -52.49 -0.42 0.79 16 33 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 34 H 0.10 1.49 6.55 -51.93 -0.34 1.15 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.63 8.10 -51.93 -0.42 0.20 16 39 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 1.21 7.36 -51.93 -0.38 0.83 16 42 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -28.61 332.30 -11.92 -40.53 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.91 Total: 1.51 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -4.41 Total: -27.29 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.59 Total: -35.75 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.61 -11.92 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232634261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.217 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds