Wall clock time and date at job start Mon Mar 30 2020 00:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00553 * 2 1 4 4 H 1.48492 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47075 * 300.00170 * 3 2 1 6 6 H 1.48496 * 109.47036 * 59.99764 * 3 2 1 7 7 C 1.37881 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00224 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.53512 * 114.17180 * 180.02562 * 9 7 2 11 11 N 1.47475 * 87.93223 * 220.14079 * 10 9 7 12 12 C 1.46904 * 111.00518 * 138.70473 * 11 10 9 13 13 C 1.50702 * 109.47471 * 167.78670 * 12 11 10 14 14 C 1.37976 * 119.72854 * 101.52973 * 13 12 11 15 15 C 1.38219 * 119.77123 * 180.02562 * 14 13 12 16 16 C 1.37977 * 119.77083 * 0.11114 * 15 14 13 17 17 C 1.38864 * 120.54729 * 359.97438 * 16 15 14 18 18 C 1.37714 * 119.67833 * 359.78427 * 17 16 15 19 19 C 1.50635 * 122.55600 * 180.67825 * 18 17 16 20 20 C 1.52739 * 110.58464 * 342.21108 * 19 18 17 21 21 C 1.53322 * 108.38629 * 51.12016 * 20 19 18 22 22 C 1.50623 * 117.76224 * 179.73750 * 17 16 15 23 23 C 1.47476 * 87.84122 * 27.00760 * 11 10 9 24 24 H 0.97001 * 119.99670 * 0.02562 * 1 2 3 25 25 H 1.09002 * 113.25421 * 312.95094 * 9 7 2 26 26 H 1.09002 * 113.47977 * 105.36713 * 10 9 7 27 27 H 1.09008 * 113.52852 * 334.91278 * 10 9 7 28 28 H 1.09004 * 109.46843 * 47.78478 * 12 11 10 29 29 H 1.09000 * 109.46812 * 287.78688 * 12 11 10 30 30 H 1.08000 * 120.11313 * 0.02562 * 14 13 12 31 31 H 1.07990 * 120.11349 * 180.14271 * 15 14 13 32 32 H 1.08002 * 119.72358 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.25652 * 102.49460 * 19 18 17 34 34 H 1.08999 * 109.25526 * 221.96204 * 19 18 17 35 35 H 1.08991 * 109.68814 * 291.39136 * 20 19 18 36 36 H 1.09005 * 109.67690 * 170.83403 * 20 19 18 37 37 H 1.08998 * 109.68102 * 170.39311 * 21 20 19 38 38 H 1.09003 * 109.68414 * 49.83873 * 21 20 19 39 39 H 1.09003 * 109.25155 * 41.98984 * 22 17 16 40 40 H 1.08998 * 109.22328 * 282.54342 * 22 17 16 41 41 H 1.08996 * 113.47422 * 87.75533 * 23 11 10 42 42 H 1.09001 * 113.47957 * 218.22692 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.1495 -3.7439 -0.0005 11 7 1.2048 -4.3602 -0.9506 12 6 1.9202 -5.0902 -2.0057 13 6 0.9460 -5.9457 -2.7739 14 6 0.4899 -5.5250 -4.0063 15 6 -0.4041 -6.3086 -4.7114 16 6 -0.8360 -7.5052 -4.1769 17 6 -0.3795 -7.9295 -2.9360 18 6 0.5150 -7.1511 -2.2358 19 6 1.0633 -7.5555 -0.8924 20 6 0.1939 -8.6419 -0.2625 21 6 0.0018 -9.7638 -1.2898 22 6 -0.8965 -9.2427 -2.4098 23 6 0.8516 -2.9993 -1.3959 24 1 -0.4850 0.8401 -0.0004 25 1 0.4451 -2.5308 0.7328 26 1 2.1888 -4.2511 0.9635 27 1 3.1381 -3.5669 -0.4243 28 1 2.6838 -5.7244 -1.5551 29 1 2.3922 -4.3790 -2.6836 30 1 0.8302 -4.5866 -4.4185 31 1 -0.7629 -5.9858 -5.6774 32 1 -1.5348 -8.1167 -4.7284 33 1 2.0777 -7.9345 -1.0174 34 1 1.0830 -6.6859 -0.2355 35 1 -0.7751 -8.2244 0.0106 36 1 0.6871 -9.0378 0.6254 37 1 -0.4686 -10.6229 -0.8115 38 1 0.9686 -10.0552 -1.7003 39 1 -0.9191 -9.9709 -3.2206 40 1 -1.9065 -9.1024 -2.0246 41 1 1.4934 -2.6228 -2.1923 42 1 -0.2091 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232634261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:50 Heat of formation + Delta-G solvation = 23.186834 kcal Electronic energy + Delta-G solvation = -20658.398890 eV Core-core repulsion = 17795.386630 eV Total energy + Delta-G solvation = -2863.012260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35602 -40.23422 -36.92446 -35.05808 -34.08960 -31.17178 -30.99288 -29.45127 -27.26119 -26.53587 -24.61289 -24.24807 -23.53693 -21.46271 -20.53046 -20.13735 -18.64126 -17.26018 -16.77263 -16.61224 -16.29121 -16.17047 -15.73365 -15.22006 -14.92943 -14.65670 -14.54994 -14.04537 -13.79191 -13.57231 -13.42945 -13.26241 -13.14150 -12.90258 -12.74933 -12.44705 -12.31747 -12.28504 -11.95839 -11.71145 -11.65058 -11.20727 -11.14027 -11.08799 -10.89460 -10.52506 -9.72897 -9.41395 -9.35920 -8.16334 -6.28080 0.46675 0.53664 1.40775 1.42481 1.54279 2.41400 2.79607 3.12940 3.43409 3.74086 3.81160 3.98104 4.08694 4.10684 4.19381 4.26849 4.31131 4.36810 4.47299 4.52483 4.56753 4.63607 4.69723 4.72398 4.80590 4.86575 4.93674 5.02321 5.03697 5.13657 5.16799 5.18614 5.21028 5.25381 5.43635 5.44295 5.49592 5.61200 5.64718 5.75648 5.83254 5.88679 6.19237 6.28342 6.37717 6.81944 7.40801 8.93714 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.004200 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.642157 B = 6665.519115 C = 7165.368286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.023 3.977 10 C 0.010 3.990 11 N -0.470 5.470 12 C 0.060 3.940 13 C -0.086 4.086 14 C -0.136 4.136 15 C -0.130 4.130 16 C -0.129 4.129 17 C -0.092 4.092 18 C -0.069 4.069 19 C -0.084 4.084 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.077 4.077 23 C 0.021 3.979 24 H 0.262 0.738 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 -18.920 -6.393 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.003 3.997 10 C -0.118 4.118 11 N -0.192 5.192 12 C -0.068 4.068 13 C -0.086 4.086 14 C -0.154 4.154 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.092 4.092 18 C -0.070 4.070 19 C -0.121 4.121 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.113 4.113 23 C -0.108 4.108 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.131 0.869 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.029 -19.304 -6.176 20.268 hybrid contribution 0.806 2.021 -0.501 2.233 sum 0.777 -17.283 -6.677 18.545 Atomic orbital electron populations 1.70113 1.07624 1.27524 1.50915 1.25849 0.95581 1.02787 0.94279 0.85498 0.79192 0.79301 0.77627 1.18684 1.20702 1.20495 1.21408 0.93043 0.91378 1.50941 0.92122 1.20028 0.94505 0.92234 0.92885 1.23844 0.95403 0.95611 0.96972 1.68808 1.27415 1.12396 1.10570 1.21598 0.94795 0.96616 0.93787 1.19871 0.98987 0.95106 0.94675 1.21125 0.99140 0.99856 0.95328 1.21245 0.97700 0.95167 1.00630 1.21414 1.00647 0.96956 0.95720 1.19962 0.96974 0.97512 0.94746 1.19635 0.97224 0.93570 0.96529 1.20523 0.99123 0.99560 0.92888 1.21535 0.99633 0.95659 0.98618 1.21540 1.00142 0.97796 0.95684 1.20506 0.99325 0.92501 0.99006 1.23799 0.98526 0.88579 0.99910 0.92870 0.95323 0.90539 0.91954 0.89595 0.93942 0.86941 0.84359 0.83880 0.90628 0.91141 0.92786 0.90369 0.89639 0.91621 0.89172 0.90469 0.93281 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.88 13.26 21.45 0.28 -54.60 16 2 C 0.01 0.80 5.46 84.66 0.46 1.26 16 3 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.53 -29.21 8.83 25.60 0.23 -28.98 16 8 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.02 1.17 3.76 -11.19 -0.04 1.13 16 10 C 0.01 0.43 7.23 83.58 0.60 1.03 16 11 N -0.47 -19.21 5.38 -932.46 -5.02 -24.23 16 12 C 0.06 2.07 4.13 85.56 0.35 2.42 16 13 C -0.09 -2.82 5.47 -19.78 -0.11 -2.93 16 14 C -0.14 -4.24 9.65 22.20 0.21 -4.03 16 15 C -0.13 -3.40 10.05 22.20 0.22 -3.18 16 16 C -0.13 -3.10 9.61 22.36 0.21 -2.88 16 17 C -0.09 -2.33 5.74 -19.86 -0.11 -2.45 16 18 C -0.07 -2.03 5.74 -19.86 -0.11 -2.15 16 19 C -0.08 -2.22 4.57 29.74 0.14 -2.08 16 20 C -0.12 -2.48 5.98 30.62 0.18 -2.30 16 21 C -0.11 -1.94 5.98 30.62 0.18 -1.76 16 22 C -0.08 -1.41 5.67 29.74 0.17 -1.24 16 23 C 0.02 1.02 7.28 83.58 0.61 1.63 16 24 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 25 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 26 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.06 2.49 7.87 -2.38 -0.02 2.47 16 28 H 0.09 2.67 7.25 -2.38 -0.02 2.65 16 29 H 0.04 1.50 7.09 -2.39 -0.02 1.48 16 30 H 0.11 3.47 8.01 -2.91 -0.02 3.45 16 31 H 0.14 2.90 8.06 -2.92 -0.02 2.88 16 32 H 0.14 2.53 8.05 -2.91 -0.02 2.50 16 33 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 34 H 0.07 2.20 6.55 -2.39 -0.02 2.18 16 35 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 39 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.05 2.35 7.36 -2.39 -0.02 2.33 16 42 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -62.63 332.30 1.47 -61.17 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.98 Total: 18.68 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 3.20 Total: -46.50 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -4.74 Total: -78.83 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -62.63 1.47 -61.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232634261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.354 kcal (2) G-P(sol) polarization free energy of solvation -62.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds