Wall clock time and date at job start Mon Mar 30 2020 01:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86802 * 120.00300 * 2 1 4 4 H 1.48500 * 109.46752 * 270.00388 * 3 2 1 5 5 H 1.48497 * 109.46730 * 29.99924 * 3 2 1 6 6 H 1.48493 * 109.47281 * 150.00364 * 3 2 1 7 7 C 1.39946 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00631 * 163.54257 * 7 2 1 9 9 C 1.41396 * 119.99955 * 343.53352 * 7 2 1 10 10 C 1.40736 * 120.24616 * 334.18889 * 9 7 2 11 11 C 1.37595 * 119.74458 * 179.97438 * 10 9 7 12 12 C 1.38650 * 120.25100 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50100 * 359.67804 * 12 11 10 14 14 C 1.37631 * 120.24748 * 0.59829 * 13 12 11 15 15 C 1.50707 * 120.12992 * 179.69884 * 14 13 12 16 16 N 1.46897 * 109.47102 * 259.73266 * 15 14 13 17 17 C 1.48535 * 110.99817 * 170.00139 * 16 15 14 18 18 C 1.54317 * 104.77145 * 200.86362 * 17 16 15 19 19 H 1.09001 * 111.82423 * 262.37085 * 18 17 16 20 20 C 1.54167 * 108.86605 * 138.34814 * 18 17 16 21 21 C 1.54841 * 104.32251 * 223.67663 * 20 18 17 22 22 C 1.54838 * 102.74022 * 38.18192 * 21 20 18 23 23 C 1.54903 * 104.93517 * 23.86699 * 18 17 16 24 24 H 1.09002 * 111.89677 * 237.66033 * 23 18 17 25 25 C 1.48639 * 111.10862 * 54.59102 * 16 15 14 26 26 H 0.97000 * 120.00015 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.12647 * 359.94659 * 10 9 7 28 28 H 1.08000 * 119.87096 * 179.97438 * 11 10 9 29 29 H 1.08010 * 119.74838 * 179.97438 * 12 11 10 30 30 H 1.08003 * 119.87555 * 180.30596 * 13 12 11 31 31 H 1.08998 * 109.46789 * 139.73302 * 15 14 13 32 32 H 1.08997 * 109.46865 * 19.73096 * 15 14 13 33 33 H 1.08999 * 110.40091 * 82.00747 * 17 16 15 34 34 H 1.09001 * 110.39409 * 319.71146 * 17 16 15 35 35 H 1.09002 * 110.45608 * 342.38525 * 20 18 17 36 36 H 1.08998 * 110.46027 * 104.96408 * 20 18 17 37 37 H 1.09004 * 110.75655 * 156.49393 * 21 20 18 38 38 H 1.08996 * 110.75831 * 279.86522 * 21 20 18 39 39 H 1.09003 * 110.46157 * 80.52516 * 22 21 20 40 40 H 1.09001 * 110.46520 * 202.97828 * 22 21 20 41 41 H 1.09000 * 110.28956 * 40.27375 * 25 16 15 42 42 H 1.08990 * 110.52637 * 277.96469 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4401 0.6999 7 6 2.0079 -1.2120 -0.0005 8 1 3.0547 -1.2311 -0.2655 9 6 1.3444 -2.4115 0.3460 10 6 0.2133 -2.3797 1.1828 11 6 -0.4248 -3.5532 1.5131 12 6 0.0430 -4.7639 1.0252 13 6 1.1524 -4.8065 0.1953 14 6 1.8098 -3.6458 -0.1436 15 6 3.0198 -3.6960 -1.0405 16 7 4.2381 -3.6032 -0.2250 17 6 5.4470 -3.8882 -1.0396 18 6 6.5293 -4.2828 -0.0128 19 1 7.1796 -3.4434 0.2333 20 6 7.3262 -5.4818 -0.5644 21 6 7.4701 -6.4358 0.6466 22 6 6.0981 -6.3017 1.3519 23 6 5.7426 -4.7856 1.2232 24 1 5.9916 -4.2201 2.1212 25 6 4.2563 -4.6491 0.8310 26 1 -0.4850 0.8400 0.0004 27 1 -0.1522 -1.4379 1.5647 28 1 -1.2927 -3.5312 2.1554 29 1 -0.4639 -5.6802 1.2899 30 1 1.5052 -5.7547 -0.1829 31 1 2.9874 -2.8618 -1.7414 32 1 3.0235 -4.6353 -1.5935 33 1 5.7523 -2.9986 -1.5905 34 1 5.2564 -4.7128 -1.7265 35 1 6.7747 -5.9679 -1.3692 36 1 8.3069 -5.1590 -0.9140 37 1 7.6347 -7.4606 0.3137 38 1 8.2758 -6.1077 1.3033 39 1 5.3510 -6.9186 0.8524 40 1 6.1808 -6.5805 2.4024 41 1 3.8797 -5.5924 0.4353 42 1 3.6640 -4.3350 1.6903 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:43 Heat of formation + Delta-G solvation = 10.074764 kcal Electronic energy + Delta-G solvation = -21114.355105 eV Core-core repulsion = 18250.774263 eV Total energy + Delta-G solvation = -2863.580842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.63301 -37.60171 -35.00298 -33.55066 -31.00048 -30.18870 -29.39961 -28.20630 -25.43236 -25.22300 -24.05679 -21.12291 -20.77497 -20.55128 -19.35410 -18.69473 -17.04402 -16.28909 -15.28869 -15.07461 -14.57420 -14.33563 -14.22575 -13.77773 -13.46719 -13.14108 -12.58007 -12.36834 -12.23266 -11.91400 -11.56058 -11.32459 -11.11716 -11.05934 -10.98707 -10.93433 -10.72938 -10.61927 -10.49208 -10.42168 -10.27512 -10.26657 -10.24571 -9.43550 -9.20856 -9.07455 -7.75160 -7.30059 -7.24326 -6.67320 -4.24474 2.84001 3.01931 3.12876 3.18918 3.31336 4.01525 4.49222 4.58172 4.71326 4.77714 5.01827 5.36298 5.40376 5.47918 5.60268 5.63578 5.68446 5.71644 5.82166 5.88725 6.01950 6.04861 6.06315 6.16294 6.17423 6.22426 6.28381 6.34047 6.47599 6.53137 6.55014 6.56525 6.71548 6.92219 7.18700 7.33149 7.44543 7.51882 7.68611 7.78396 7.99578 8.14652 8.21878 8.39193 8.75708 9.01611 9.08383 10.27330 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.006161 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.408658 B = 4543.915387 C = 5655.361395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.446 4.446 8 H 0.091 0.909 9 C 0.130 3.870 10 C -0.164 4.164 11 C -0.106 4.106 12 C -0.247 4.247 13 C -0.085 4.085 14 C -0.198 4.198 15 C 0.116 3.884 16 N -0.495 5.495 17 C 0.034 3.966 18 C -0.093 4.093 19 H 0.080 0.920 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.094 4.094 24 H 0.083 0.917 25 C 0.052 3.948 26 H 0.278 0.722 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.014 0.986 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.760 -7.107 0.071 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.475 4.475 8 H 0.109 0.891 9 C 0.127 3.873 10 C -0.184 4.184 11 C -0.125 4.125 12 C -0.266 4.266 13 C -0.104 4.104 14 C -0.200 4.200 15 C -0.011 4.011 16 N -0.218 5.218 17 C -0.094 4.094 18 C -0.112 4.112 19 H 0.099 0.901 20 C -0.157 4.157 21 C -0.161 4.161 22 C -0.158 4.158 23 C -0.113 4.113 24 H 0.102 0.898 25 C -0.076 4.076 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.033 0.967 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.547 -6.382 0.250 12.330 hybrid contribution 0.061 -0.035 -0.408 0.414 sum 10.608 -6.417 -0.158 12.399 Atomic orbital electron populations 1.69840 1.07606 1.28974 1.35917 1.25967 0.94635 1.01336 0.92424 0.86381 0.80823 0.80838 0.79090 1.19691 1.20395 1.18345 1.19753 0.98218 0.90411 1.39120 0.89066 1.17381 0.90401 0.91528 0.88015 1.21341 0.99262 0.96576 1.01190 1.20662 0.98518 0.93484 0.99815 1.20270 1.01866 0.96079 1.08428 1.20343 0.96174 0.95546 0.98317 1.19438 1.00255 0.93744 1.06563 1.20787 0.87720 0.98472 0.94099 1.65514 1.01401 1.44379 1.10556 1.23264 0.91544 0.99430 0.95183 1.22490 0.96228 0.97365 0.95111 0.90126 1.22492 0.99737 0.95816 0.97616 1.22482 0.97513 0.98980 0.97151 1.22845 0.96759 0.95980 1.00180 1.22905 0.95459 0.94946 0.97954 0.89840 1.23055 0.94537 0.93499 0.96536 0.91125 0.86628 0.89776 0.89917 0.90170 0.90482 0.96740 0.90910 0.94549 0.91678 0.92013 0.92022 0.91709 0.91593 0.92015 0.94455 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.77 10.97 55.55 0.61 -20.16 16 2 C 0.07 1.85 5.16 -17.34 -0.09 1.76 16 3 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.45 -11.68 8.18 -37.74 -0.31 -11.99 16 8 H 0.09 2.36 6.85 -52.49 -0.36 2.00 16 9 C 0.13 3.41 5.56 -106.82 -0.59 2.82 16 10 C -0.16 -4.32 8.68 -38.87 -0.34 -4.66 16 11 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 12 C -0.25 -5.65 10.05 -39.29 -0.39 -6.05 16 13 C -0.08 -1.92 9.04 -39.66 -0.36 -2.28 16 14 C -0.20 -4.71 4.44 -103.91 -0.46 -5.17 16 15 C 0.12 2.42 4.39 -4.97 -0.02 2.40 16 16 N -0.50 -9.41 5.22 -231.44 -1.21 -10.62 16 17 C 0.03 0.53 6.02 -2.23 -0.01 0.51 16 18 C -0.09 -1.24 3.87 -88.32 -0.34 -1.59 16 19 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 20 C -0.12 -1.31 6.36 -25.15 -0.16 -1.47 16 21 C -0.12 -1.27 6.90 -24.79 -0.17 -1.44 16 22 C -0.12 -1.42 6.41 -24.02 -0.15 -1.58 16 23 C -0.09 -1.33 4.05 -87.18 -0.35 -1.68 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 25 C 0.05 0.90 4.78 -2.17 -0.01 0.89 16 26 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 27 H 0.12 3.15 6.21 -52.49 -0.33 2.82 16 28 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.08 1.64 8.03 -52.48 -0.42 1.21 16 31 H 0.08 1.70 7.34 -51.93 -0.38 1.31 16 32 H 0.01 0.28 7.73 -51.93 -0.40 -0.12 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.55 6.87 -51.93 -0.36 0.19 16 35 H 0.06 0.74 7.18 -51.93 -0.37 0.36 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.82 7.25 -51.93 -0.38 0.44 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.65 6.95 -51.93 -0.36 0.29 16 42 H 0.08 1.58 7.92 -51.93 -0.41 1.17 16 LS Contribution 324.77 15.07 4.89 4.89 Total: -1.00 -26.88 324.77 -11.61 -38.49 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.71 Total: 5.82 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -4.17 Total: -32.47 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: -0.60 Total: -30.78 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.88 -11.61 -38.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.570 kcal (2) G-P(sol) polarization free energy of solvation -26.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds