Wall clock time and date at job start Mon Mar 30 2020 01:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86802 * 120.00300 * 2 1 4 4 H 1.48500 * 109.46752 * 270.00388 * 3 2 1 5 5 H 1.48497 * 109.46730 * 29.99924 * 3 2 1 6 6 H 1.48493 * 109.47281 * 150.00364 * 3 2 1 7 7 C 1.39946 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00631 * 163.54257 * 7 2 1 9 9 C 1.41396 * 119.99955 * 343.53352 * 7 2 1 10 10 C 1.40736 * 120.24616 * 334.18889 * 9 7 2 11 11 C 1.37595 * 119.74458 * 179.97438 * 10 9 7 12 12 C 1.38650 * 120.25100 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50100 * 359.67804 * 12 11 10 14 14 C 1.37631 * 120.24748 * 0.59829 * 13 12 11 15 15 C 1.50707 * 120.12992 * 179.69884 * 14 13 12 16 16 N 1.46897 * 109.47102 * 259.73266 * 15 14 13 17 17 C 1.48535 * 110.99817 * 170.00139 * 16 15 14 18 18 C 1.54317 * 104.77145 * 200.86362 * 17 16 15 19 19 H 1.09001 * 111.82423 * 262.37085 * 18 17 16 20 20 C 1.54167 * 108.86605 * 138.34814 * 18 17 16 21 21 C 1.54841 * 104.32251 * 223.67663 * 20 18 17 22 22 C 1.54838 * 102.74022 * 38.18192 * 21 20 18 23 23 C 1.54903 * 104.93517 * 23.86699 * 18 17 16 24 24 H 1.09002 * 111.89677 * 237.66033 * 23 18 17 25 25 C 1.48639 * 111.10862 * 54.59102 * 16 15 14 26 26 H 0.97000 * 120.00015 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.12647 * 359.94659 * 10 9 7 28 28 H 1.08000 * 119.87096 * 179.97438 * 11 10 9 29 29 H 1.08010 * 119.74838 * 179.97438 * 12 11 10 30 30 H 1.08003 * 119.87555 * 180.30596 * 13 12 11 31 31 H 1.08998 * 109.46789 * 139.73302 * 15 14 13 32 32 H 1.08997 * 109.46865 * 19.73096 * 15 14 13 33 33 H 1.08999 * 110.40091 * 82.00747 * 17 16 15 34 34 H 1.09001 * 110.39409 * 319.71146 * 17 16 15 35 35 H 1.09002 * 110.45608 * 342.38525 * 20 18 17 36 36 H 1.08998 * 110.46027 * 104.96408 * 20 18 17 37 37 H 1.09004 * 110.75655 * 156.49393 * 21 20 18 38 38 H 1.08996 * 110.75831 * 279.86522 * 21 20 18 39 39 H 1.09003 * 110.46157 * 80.52516 * 22 21 20 40 40 H 1.09001 * 110.46520 * 202.97828 * 22 21 20 41 41 H 1.09000 * 110.28956 * 40.27375 * 25 16 15 42 42 H 1.08990 * 110.52637 * 277.96469 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4401 0.6999 7 6 2.0079 -1.2120 -0.0005 8 1 3.0547 -1.2311 -0.2655 9 6 1.3444 -2.4115 0.3460 10 6 0.2133 -2.3797 1.1828 11 6 -0.4248 -3.5532 1.5131 12 6 0.0430 -4.7639 1.0252 13 6 1.1524 -4.8065 0.1953 14 6 1.8098 -3.6458 -0.1436 15 6 3.0198 -3.6960 -1.0405 16 7 4.2381 -3.6032 -0.2250 17 6 5.4470 -3.8882 -1.0396 18 6 6.5293 -4.2828 -0.0128 19 1 7.1796 -3.4434 0.2333 20 6 7.3262 -5.4818 -0.5644 21 6 7.4701 -6.4358 0.6466 22 6 6.0981 -6.3017 1.3519 23 6 5.7426 -4.7856 1.2232 24 1 5.9916 -4.2201 2.1212 25 6 4.2563 -4.6491 0.8310 26 1 -0.4850 0.8400 0.0004 27 1 -0.1522 -1.4379 1.5647 28 1 -1.2927 -3.5312 2.1554 29 1 -0.4639 -5.6802 1.2899 30 1 1.5052 -5.7547 -0.1829 31 1 2.9874 -2.8618 -1.7414 32 1 3.0235 -4.6353 -1.5935 33 1 5.7523 -2.9986 -1.5905 34 1 5.2564 -4.7128 -1.7265 35 1 6.7747 -5.9679 -1.3692 36 1 8.3069 -5.1590 -0.9140 37 1 7.6347 -7.4606 0.3137 38 1 8.2758 -6.1077 1.3033 39 1 5.3510 -6.9186 0.8524 40 1 6.1808 -6.5805 2.4024 41 1 3.8797 -5.5924 0.4353 42 1 3.6640 -4.3350 1.6903 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:42 Heat of formation + Delta-G solvation = -2.848345 kcal Electronic energy + Delta-G solvation = -21114.915493 eV Core-core repulsion = 18250.774263 eV Total energy + Delta-G solvation = -2864.141231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.89202 -39.35178 -36.33139 -35.45632 -32.58380 -31.41421 -31.19896 -29.62218 -27.21921 -26.41779 -25.65240 -22.83911 -22.30713 -21.69762 -20.89686 -19.91768 -18.96241 -17.46281 -17.11142 -16.42404 -16.15590 -15.77323 -15.73002 -15.13000 -15.03243 -14.50567 -14.32016 -13.79455 -13.69540 -13.38172 -13.16012 -12.92940 -12.76505 -12.72397 -12.43897 -12.36253 -12.07706 -11.91676 -11.78063 -11.59425 -11.51111 -11.40621 -11.37881 -11.30017 -11.04230 -10.97157 -9.29281 -9.21567 -9.06625 -8.56589 -6.22579 1.00816 1.13223 1.38850 1.50004 1.56822 2.24273 2.80054 3.24812 3.54909 3.66571 3.81093 3.95084 4.26301 4.31694 4.33726 4.43378 4.48698 4.52513 4.56929 4.59613 4.62496 4.71848 4.80797 4.85167 4.88189 5.00489 5.03209 5.12470 5.14816 5.19798 5.24839 5.30629 5.34318 5.39996 5.50674 5.53459 5.55467 5.80022 5.98492 6.18186 6.20015 6.25334 6.33510 6.48282 6.80088 7.06816 7.14371 8.40110 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.006161 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.408658 B = 4543.915387 C = 5655.361395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.033 3.967 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.471 4.471 8 H 0.085 0.915 9 C 0.100 3.900 10 C -0.194 4.194 11 C -0.114 4.114 12 C -0.245 4.245 13 C -0.089 4.089 14 C -0.200 4.200 15 C 0.125 3.875 16 N -0.518 5.518 17 C 0.034 3.966 18 C -0.089 4.089 19 H 0.083 0.917 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.093 4.093 24 H 0.079 0.921 25 C 0.057 3.943 26 H 0.284 0.716 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.646 -8.480 -0.173 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.501 4.501 8 H 0.103 0.897 9 C 0.097 3.903 10 C -0.214 4.214 11 C -0.132 4.132 12 C -0.264 4.264 13 C -0.108 4.108 14 C -0.202 4.202 15 C -0.002 4.002 16 N -0.241 5.241 17 C -0.094 4.094 18 C -0.108 4.108 19 H 0.102 0.898 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.113 4.113 24 H 0.098 0.902 25 C -0.071 4.071 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.434 -7.770 0.005 14.662 hybrid contribution -0.576 0.286 -0.320 0.718 sum 11.858 -7.485 -0.315 14.026 Atomic orbital electron populations 1.69899 1.08913 1.30087 1.36786 1.26729 0.95347 1.04350 0.91655 0.85339 0.79188 0.76655 0.79343 1.18811 1.19455 1.18598 1.19854 0.98053 0.91472 1.40729 0.89724 1.17728 0.91030 0.92811 0.88745 1.21318 1.00563 0.96752 1.02728 1.20925 0.98990 0.93305 0.99982 1.20654 1.01638 0.96703 1.07387 1.20659 0.95903 0.96265 0.97987 1.19799 1.00970 0.93373 1.06067 1.20606 0.87823 0.98276 0.93495 1.65399 1.01713 1.45632 1.11367 1.23346 0.90658 0.99789 0.95596 1.22502 0.95715 0.98627 0.93964 0.89816 1.22462 1.00091 0.94699 0.97850 1.22471 0.96547 0.99763 0.96621 1.22813 0.97757 0.93694 1.01113 1.22899 0.93100 0.97073 0.98184 0.90226 1.22962 0.96530 0.92723 0.94875 0.90559 0.88585 0.87793 0.86911 0.87511 0.92391 0.95354 0.91004 0.93686 0.91761 0.90258 0.90376 0.90634 0.92078 0.91058 0.94365 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.70 10.97 21.83 0.24 -44.47 16 2 C 0.03 1.71 5.16 85.26 0.44 2.15 16 3 Si 0.97 39.97 29.59 68.60 2.03 42.00 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.47 -25.70 8.18 23.46 0.19 -25.50 16 8 H 0.08 4.57 6.85 -2.91 -0.02 4.55 16 9 C 0.10 5.43 5.56 -21.29 -0.12 5.31 16 10 C -0.19 -10.58 8.68 22.73 0.20 -10.39 16 11 C -0.11 -5.49 10.02 22.22 0.22 -5.26 16 12 C -0.24 -10.90 10.05 22.46 0.23 -10.67 16 13 C -0.09 -3.97 9.04 22.22 0.20 -3.77 16 14 C -0.20 -9.66 4.44 -19.40 -0.09 -9.74 16 15 C 0.13 5.27 4.39 85.56 0.38 5.65 16 16 N -0.52 -19.75 5.22 -886.15 -4.62 -24.37 16 17 C 0.03 1.01 6.02 86.43 0.52 1.53 16 18 C -0.09 -2.21 3.87 -9.30 -0.04 -2.25 16 19 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 20 C -0.11 -2.13 6.36 31.62 0.20 -1.93 16 21 C -0.12 -1.97 6.90 31.85 0.22 -1.75 16 22 C -0.12 -2.47 6.41 32.35 0.21 -2.26 16 23 C -0.09 -2.53 4.05 -8.56 -0.03 -2.57 16 24 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 25 C 0.06 1.99 4.78 86.42 0.41 2.40 16 26 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 27 H 0.10 5.51 6.21 -2.91 -0.02 5.49 16 28 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 29 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.11 4.13 8.03 -2.91 -0.02 4.10 16 31 H 0.06 2.63 7.34 -2.39 -0.02 2.61 16 32 H 0.03 1.09 7.73 -2.39 -0.02 1.07 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.27 6.87 -2.39 -0.02 1.26 16 35 H 0.06 1.24 7.18 -2.39 -0.02 1.22 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.37 7.25 -2.39 -0.02 1.35 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.04 1.30 6.95 -2.39 -0.02 1.29 16 42 H 0.05 1.87 7.92 -2.39 -0.02 1.85 16 Total: -1.00 -59.41 324.77 1.77 -57.64 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.98 Total: 28.25 kcal Atomic # 6 Polarization: -62.19 SS G_CDS: 3.14 Total: -59.05 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -4.38 Total: -68.84 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -59.41 1.77 -57.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.792 kcal (2) G-P(sol) polarization free energy of solvation -59.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds