Wall clock time and date at job start Mon Mar 30 2020 01:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 120.00405 * 2 1 4 4 H 1.48500 * 109.46718 * 86.87526 * 3 2 1 5 5 H 1.48496 * 109.47359 * 206.87718 * 3 2 1 6 6 H 1.48499 * 109.46874 * 326.87913 * 3 2 1 7 7 C 1.39953 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00165 * 13.69083 * 7 2 1 9 9 C 1.41401 * 119.99906 * 193.69092 * 7 2 1 10 10 C 1.40731 * 120.24137 * 29.82662 * 9 7 2 11 11 C 1.37596 * 119.74293 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24618 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50412 * 359.95208 * 12 11 10 14 14 C 1.37633 * 120.24630 * 359.76652 * 13 12 11 15 15 C 1.50704 * 120.12998 * 180.27353 * 14 13 12 16 16 N 1.46897 * 109.46740 * 260.50692 * 15 14 13 17 17 C 1.47608 * 111.00298 * 260.67198 * 16 15 14 18 18 C 1.53621 * 88.08347 * 221.95116 * 17 16 15 19 19 C 1.46788 * 110.99847 * 164.92029 * 16 15 14 20 20 C 1.53686 * 115.01367 * 21.13948 * 19 16 15 21 21 C 1.55029 * 104.03005 * 207.16413 * 20 19 16 22 22 C 1.54942 * 102.84106 * 37.40713 * 21 20 19 23 23 C 1.53300 * 115.26349 * 255.55140 * 19 16 15 24 24 H 0.97003 * 119.99544 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.13302 * 0.02862 * 10 9 7 26 26 H 1.07998 * 119.88004 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.74836 * 179.97438 * 12 11 10 28 28 H 1.07995 * 119.87388 * 180.02562 * 13 12 11 29 29 H 1.08997 * 109.46456 * 20.50565 * 15 14 13 30 30 H 1.08998 * 109.47130 * 140.50943 * 15 14 13 31 31 H 1.09004 * 113.44653 * 336.75669 * 17 16 15 32 32 H 1.09004 * 113.45418 * 107.13869 * 17 16 15 33 33 H 1.09002 * 114.19826 * 271.86894 * 18 17 16 34 34 H 1.08996 * 114.20345 * 139.06444 * 18 17 16 35 35 H 1.09000 * 110.51861 * 325.79482 * 20 19 16 36 36 H 1.08998 * 110.52030 * 88.52382 * 20 19 16 37 37 H 1.09001 * 110.73727 * 279.07055 * 21 20 19 38 38 H 1.09000 * 110.90164 * 155.81992 * 21 20 19 39 39 H 1.09000 * 110.48342 * 203.69576 * 22 21 20 40 40 H 1.09000 * 110.59379 * 81.12476 * 22 21 20 41 41 H 1.08998 * 110.07845 * 248.52913 * 23 19 16 42 42 H 1.09000 * 110.07991 * 10.03151 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4237 2.0844 1.3980 5 1 3.5713 1.4219 -0.6329 6 1 1.4744 2.6327 -0.7650 7 6 2.0079 -1.2121 -0.0005 8 1 1.4910 -2.1340 -0.2223 9 6 3.3918 -1.2296 0.2893 10 6 3.9486 -0.2630 1.1473 11 6 5.2966 -0.2894 1.4219 12 6 6.1057 -1.2631 0.8563 13 6 5.5680 -2.2203 0.0102 14 6 4.2213 -2.2167 -0.2740 15 6 3.6385 -3.2623 -1.1894 16 7 3.4708 -2.6967 -2.5347 17 6 2.0740 -2.2769 -2.7618 18 6 2.1766 -2.8786 -4.1715 19 6 3.2501 -3.7557 -3.5269 20 6 2.7408 -5.0875 -2.9534 21 6 3.2489 -6.1497 -3.9618 22 6 4.6450 -5.6075 -4.3588 23 6 4.4538 -4.0763 -4.4204 24 1 -0.4849 0.8401 -0.0004 25 1 3.3203 0.4964 1.5887 26 1 5.7262 0.4510 2.0804 27 1 7.1629 -1.2761 1.0770 28 1 6.2075 -2.9743 -0.4244 29 1 4.3106 -4.1191 -1.2366 30 1 2.6693 -3.5814 -0.8060 31 1 1.3571 -2.7912 -2.1217 32 1 1.9404 -1.1951 -2.7604 33 1 2.5565 -2.1888 -4.9252 34 1 1.2877 -3.4225 -4.4910 35 1 3.1651 -5.2652 -1.9652 36 1 1.6517 -5.0929 -2.9092 37 1 2.5934 -6.2014 -4.8311 38 1 3.3352 -7.1270 -3.4867 39 1 4.9413 -5.9944 -5.3338 40 1 5.3868 -5.8693 -3.6043 41 1 4.2524 -3.7651 -5.4454 42 1 5.3439 -3.5718 -4.0444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235513795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:15 Heat of formation + Delta-G solvation = 47.795227 kcal Electronic energy + Delta-G solvation = -21574.586238 eV Core-core repulsion = 18712.641078 eV Total energy + Delta-G solvation = -2861.945160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64562 -37.79216 -35.31983 -33.54325 -31.80392 -30.31430 -28.69831 -28.10548 -26.60810 -25.17267 -23.45699 -21.69907 -21.33801 -20.47944 -19.47987 -17.71679 -17.16531 -16.06269 -15.82344 -15.49933 -14.71779 -14.30788 -14.14994 -13.74194 -13.45451 -13.12602 -13.07336 -12.55929 -12.24327 -11.90027 -11.72532 -11.53450 -11.30279 -11.17231 -10.94600 -10.87489 -10.79490 -10.70626 -10.52500 -10.41438 -10.18515 -9.98157 -9.72536 -9.51917 -9.49372 -9.06051 -8.06280 -7.53926 -7.49962 -6.87759 -4.41664 2.63215 2.73735 3.15266 3.25536 3.38650 4.04009 4.47639 4.61289 4.73487 4.78926 5.05791 5.19183 5.45790 5.51073 5.59773 5.69462 5.70821 5.76983 5.90423 5.95609 6.01712 6.04525 6.06288 6.11829 6.19086 6.21468 6.25301 6.33778 6.38129 6.40367 6.46222 6.57467 6.66207 6.76916 6.82047 6.98422 7.15492 7.25237 7.47574 7.71136 7.76919 7.87664 7.93295 8.19272 8.38258 8.70890 8.86549 10.13907 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.007172 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.228422 B = 3902.920214 C = 4803.012581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.243 1.243 6 H -0.296 1.296 7 C -0.439 4.439 8 H 0.091 0.909 9 C 0.102 3.898 10 C -0.240 4.240 11 C -0.081 4.081 12 C -0.243 4.243 13 C -0.070 4.070 14 C -0.164 4.164 15 C 0.088 3.912 16 N -0.447 5.447 17 C 0.026 3.974 18 C -0.146 4.146 19 C 0.050 3.950 20 C -0.137 4.137 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.103 4.103 24 H 0.283 0.717 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.992 -7.123 -7.151 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.132 4.132 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.166 1.166 6 H -0.224 1.224 7 C -0.468 4.468 8 H 0.108 0.892 9 C 0.099 3.901 10 C -0.259 4.259 11 C -0.100 4.100 12 C -0.262 4.262 13 C -0.089 4.089 14 C -0.166 4.166 15 C -0.039 4.039 16 N -0.168 5.168 17 C -0.103 4.103 18 C -0.184 4.184 19 C -0.041 4.041 20 C -0.175 4.175 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.141 4.141 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.277 -6.555 -7.204 10.638 hybrid contribution -0.360 0.330 0.391 0.626 sum 3.917 -6.225 -6.813 10.025 Atomic orbital electron populations 1.69660 1.07857 1.29952 1.36626 1.26044 0.94669 1.01379 0.91072 0.86376 0.81281 0.80035 0.78601 1.20135 1.16590 1.22357 1.19418 0.91467 0.95296 1.40629 0.89154 1.17576 0.93203 0.90404 0.88906 1.21004 0.95050 1.04291 1.05578 1.20573 0.93964 0.97123 0.98328 1.20358 0.97755 1.00862 1.07228 1.20454 0.94186 0.97265 0.97017 1.19419 0.92809 1.01714 1.02611 1.21209 0.99101 0.94676 0.88912 1.68937 1.23211 1.20805 1.03885 1.23686 0.90568 1.02479 0.93524 1.23310 0.97957 0.98938 0.98153 1.22871 0.94772 0.91641 0.94806 1.22722 1.00798 0.94346 0.99666 1.22425 0.96643 0.97850 0.98780 1.22390 0.97059 0.96057 1.00741 1.21951 0.98323 0.94962 0.98856 0.90684 0.88456 0.89164 0.89134 0.89123 0.92525 0.93255 0.91090 0.89792 0.89705 0.91506 0.90214 0.91489 0.91766 0.91996 0.92156 0.91932 0.91800 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.26 13.93 55.55 0.77 -20.49 16 2 C 0.09 2.21 5.46 -17.34 -0.09 2.11 16 3 Si 0.91 21.30 24.40 -169.99 -4.15 17.15 16 4 H -0.27 -6.32 6.66 56.52 0.38 -5.94 16 5 H -0.24 -5.96 6.69 56.52 0.38 -5.58 16 6 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.44 -11.32 7.10 -37.74 -0.27 -11.59 16 8 H 0.09 2.41 5.45 -52.49 -0.29 2.12 16 9 C 0.10 2.57 5.15 -106.82 -0.55 2.02 16 10 C -0.24 -5.91 7.02 -38.87 -0.27 -6.18 16 11 C -0.08 -1.83 10.02 -39.66 -0.40 -2.23 16 12 C -0.24 -5.21 10.05 -39.29 -0.39 -5.61 16 13 C -0.07 -1.52 9.65 -39.66 -0.38 -1.90 16 14 C -0.16 -3.76 5.52 -103.91 -0.57 -4.33 16 15 C 0.09 1.76 3.44 -4.98 -0.02 1.75 16 16 N -0.45 -8.56 6.15 -232.62 -1.43 -9.99 16 17 C 0.03 0.50 5.57 -8.55 -0.05 0.45 16 18 C -0.15 -2.25 7.50 -26.47 -0.20 -2.44 16 19 C 0.05 0.77 1.11 -136.65 -0.15 0.62 16 20 C -0.14 -1.91 5.22 -25.30 -0.13 -2.04 16 21 C -0.12 -1.37 6.91 -24.63 -0.17 -1.54 16 22 C -0.12 -1.45 6.84 -24.96 -0.17 -1.62 16 23 C -0.10 -1.41 6.45 -25.83 -0.17 -1.57 16 24 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 25 H 0.10 2.40 4.34 -52.49 -0.23 2.18 16 26 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.09 1.74 8.04 -52.49 -0.42 1.32 16 29 H 0.06 1.04 6.67 -51.93 -0.35 0.69 16 30 H 0.05 1.03 5.52 -51.93 -0.29 0.74 16 31 H 0.07 1.43 6.28 -51.93 -0.33 1.11 16 32 H 0.08 1.81 7.95 -51.93 -0.41 1.40 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 35 H 0.08 1.18 5.51 -51.93 -0.29 0.89 16 36 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 42 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -26.61 314.77 -10.45 -37.05 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.39 Total: 5.64 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: -3.99 Total: -34.11 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: -0.66 Total: -30.48 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.15 Total: 17.15 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.61 -10.45 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235513795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.847 kcal (2) G-P(sol) polarization free energy of solvation -26.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds