Wall clock time and date at job start Mon Mar 30 2020 01:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 120.00405 * 2 1 4 4 H 1.48500 * 109.46718 * 86.87526 * 3 2 1 5 5 H 1.48496 * 109.47359 * 206.87718 * 3 2 1 6 6 H 1.48499 * 109.46874 * 326.87913 * 3 2 1 7 7 C 1.39953 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00165 * 13.69083 * 7 2 1 9 9 C 1.41401 * 119.99906 * 193.69092 * 7 2 1 10 10 C 1.40731 * 120.24137 * 29.82662 * 9 7 2 11 11 C 1.37596 * 119.74293 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24618 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50412 * 359.95208 * 12 11 10 14 14 C 1.37633 * 120.24630 * 359.76652 * 13 12 11 15 15 C 1.50704 * 120.12998 * 180.27353 * 14 13 12 16 16 N 1.46897 * 109.46740 * 260.50692 * 15 14 13 17 17 C 1.47608 * 111.00298 * 260.67198 * 16 15 14 18 18 C 1.53621 * 88.08347 * 221.95116 * 17 16 15 19 19 C 1.46788 * 110.99847 * 164.92029 * 16 15 14 20 20 C 1.53686 * 115.01367 * 21.13948 * 19 16 15 21 21 C 1.55029 * 104.03005 * 207.16413 * 20 19 16 22 22 C 1.54942 * 102.84106 * 37.40713 * 21 20 19 23 23 C 1.53300 * 115.26349 * 255.55140 * 19 16 15 24 24 H 0.97003 * 119.99544 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.13302 * 0.02862 * 10 9 7 26 26 H 1.07998 * 119.88004 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.74836 * 179.97438 * 12 11 10 28 28 H 1.07995 * 119.87388 * 180.02562 * 13 12 11 29 29 H 1.08997 * 109.46456 * 20.50565 * 15 14 13 30 30 H 1.08998 * 109.47130 * 140.50943 * 15 14 13 31 31 H 1.09004 * 113.44653 * 336.75669 * 17 16 15 32 32 H 1.09004 * 113.45418 * 107.13869 * 17 16 15 33 33 H 1.09002 * 114.19826 * 271.86894 * 18 17 16 34 34 H 1.08996 * 114.20345 * 139.06444 * 18 17 16 35 35 H 1.09000 * 110.51861 * 325.79482 * 20 19 16 36 36 H 1.08998 * 110.52030 * 88.52382 * 20 19 16 37 37 H 1.09001 * 110.73727 * 279.07055 * 21 20 19 38 38 H 1.09000 * 110.90164 * 155.81992 * 21 20 19 39 39 H 1.09000 * 110.48342 * 203.69576 * 22 21 20 40 40 H 1.09000 * 110.59379 * 81.12476 * 22 21 20 41 41 H 1.08998 * 110.07845 * 248.52913 * 23 19 16 42 42 H 1.09000 * 110.07991 * 10.03151 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4237 2.0844 1.3980 5 1 3.5713 1.4219 -0.6329 6 1 1.4744 2.6327 -0.7650 7 6 2.0079 -1.2121 -0.0005 8 1 1.4910 -2.1340 -0.2223 9 6 3.3918 -1.2296 0.2893 10 6 3.9486 -0.2630 1.1473 11 6 5.2966 -0.2894 1.4219 12 6 6.1057 -1.2631 0.8563 13 6 5.5680 -2.2203 0.0102 14 6 4.2213 -2.2167 -0.2740 15 6 3.6385 -3.2623 -1.1894 16 7 3.4708 -2.6967 -2.5347 17 6 2.0740 -2.2769 -2.7618 18 6 2.1766 -2.8786 -4.1715 19 6 3.2501 -3.7557 -3.5269 20 6 2.7408 -5.0875 -2.9534 21 6 3.2489 -6.1497 -3.9618 22 6 4.6450 -5.6075 -4.3588 23 6 4.4538 -4.0763 -4.4204 24 1 -0.4849 0.8401 -0.0004 25 1 3.3203 0.4964 1.5887 26 1 5.7262 0.4510 2.0804 27 1 7.1629 -1.2761 1.0770 28 1 6.2075 -2.9743 -0.4244 29 1 4.3106 -4.1191 -1.2366 30 1 2.6693 -3.5814 -0.8060 31 1 1.3571 -2.7912 -2.1217 32 1 1.9404 -1.1951 -2.7604 33 1 2.5565 -2.1888 -4.9252 34 1 1.2877 -3.4225 -4.4910 35 1 3.1651 -5.2652 -1.9652 36 1 1.6517 -5.0929 -2.9092 37 1 2.5934 -6.2014 -4.8311 38 1 3.3352 -7.1270 -3.4867 39 1 4.9413 -5.9944 -5.3338 40 1 5.3868 -5.8693 -3.6043 41 1 4.2524 -3.7651 -5.4454 42 1 5.3439 -3.5718 -4.0444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235513795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:14 Heat of formation + Delta-G solvation = 32.678626 kcal Electronic energy + Delta-G solvation = -21575.241743 eV Core-core repulsion = 18712.641078 eV Total energy + Delta-G solvation = -2862.600665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99883 -39.55283 -36.47189 -35.44910 -33.43945 -32.17528 -29.95537 -29.51232 -27.79038 -26.99377 -25.06310 -23.22865 -22.95408 -21.67210 -21.04012 -19.31563 -18.76542 -17.63317 -17.31177 -16.76198 -16.37004 -15.94182 -15.70734 -15.47270 -14.84629 -14.56322 -14.31741 -14.24859 -13.81868 -13.60797 -13.42223 -12.90795 -12.80210 -12.66200 -12.53316 -12.34734 -12.06139 -11.94529 -11.90326 -11.85530 -11.56242 -11.52539 -11.32941 -11.18464 -10.93204 -10.90265 -9.57637 -9.39127 -9.27594 -8.82307 -6.37719 0.81575 0.89500 1.24031 1.37160 1.46738 2.12631 2.68672 3.14399 3.50919 3.65684 3.69258 3.91030 4.06935 4.23829 4.29164 4.36234 4.42154 4.44470 4.52270 4.57881 4.62516 4.69233 4.79324 4.86826 4.89145 4.92453 4.98061 5.01180 5.08210 5.12756 5.13902 5.20359 5.24804 5.25605 5.39159 5.46439 5.51897 5.66205 5.74292 5.89830 5.97611 6.07270 6.33162 6.38138 6.48367 6.82408 6.93452 8.24459 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.007172 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.228422 B = 3902.920214 C = 4803.012581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.055 3.945 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.261 1.261 6 H -0.286 1.286 7 C -0.451 4.451 8 H 0.066 0.934 9 C 0.076 3.924 10 C -0.260 4.260 11 C -0.092 4.092 12 C -0.229 4.229 13 C -0.078 4.078 14 C -0.173 4.173 15 C 0.099 3.901 16 N -0.465 5.465 17 C 0.025 3.975 18 C -0.130 4.130 19 C 0.051 3.949 20 C -0.138 4.138 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.101 4.101 24 H 0.288 0.712 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 -8.273 -8.295 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.158 4.158 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.185 1.185 6 H -0.213 1.213 7 C -0.481 4.481 8 H 0.084 0.916 9 C 0.074 3.926 10 C -0.279 4.279 11 C -0.110 4.110 12 C -0.248 4.248 13 C -0.097 4.097 14 C -0.174 4.174 15 C -0.028 4.028 16 N -0.186 5.186 17 C -0.104 4.104 18 C -0.168 4.168 19 C -0.039 4.039 20 C -0.177 4.177 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.139 4.139 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.668 -7.709 -8.346 13.173 hybrid contribution -0.938 0.613 0.777 1.364 sum 5.730 -7.095 -7.568 11.851 Atomic orbital electron populations 1.69685 1.08561 1.30700 1.38937 1.26496 0.95126 1.03160 0.91058 0.85676 0.79443 0.78058 0.78677 1.19402 1.18503 1.21334 1.19301 0.92146 0.94632 1.42038 0.91582 1.17813 0.93227 0.91784 0.89818 1.21142 0.96346 1.04356 1.06096 1.20943 0.93175 0.98168 0.98739 1.20853 0.99428 0.99335 1.05190 1.20839 0.93870 0.98056 0.96914 1.19866 0.93627 1.01453 1.02478 1.21074 0.98287 0.94354 0.89097 1.68864 1.22851 1.22927 1.03970 1.23483 0.90582 1.00203 0.96161 1.23276 0.98900 0.98676 0.95921 1.22989 0.95767 0.91394 0.93778 1.22716 1.00515 0.94580 0.99897 1.22414 0.96605 0.97440 0.98399 1.22372 0.97037 0.94193 1.02036 1.21954 0.96499 0.96639 0.98858 0.90132 0.89209 0.86286 0.85579 0.86207 0.90706 0.95173 0.93131 0.93260 0.88843 0.89571 0.91388 0.92000 0.90480 0.90572 0.89891 0.92021 0.90436 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.51 13.93 21.83 0.30 -46.20 16 2 C 0.06 2.96 5.46 85.26 0.47 3.43 16 3 Si 0.95 45.12 24.40 68.60 1.67 46.80 16 4 H -0.27 -12.19 6.66 99.48 0.66 -11.53 16 5 H -0.26 -12.94 6.69 99.48 0.67 -12.27 16 6 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.45 -24.52 7.10 23.46 0.17 -24.35 16 8 H 0.07 3.81 5.45 -2.91 -0.02 3.79 16 9 C 0.08 3.92 5.15 -21.29 -0.11 3.81 16 10 C -0.26 -12.81 7.02 22.73 0.16 -12.65 16 11 C -0.09 -3.94 10.02 22.22 0.22 -3.72 16 12 C -0.23 -9.09 10.05 22.46 0.23 -8.87 16 13 C -0.08 -3.20 9.65 22.22 0.21 -2.98 16 14 C -0.17 -7.91 5.52 -19.40 -0.11 -8.01 16 15 C 0.10 4.01 3.44 85.56 0.29 4.31 16 16 N -0.46 -17.92 6.15 -889.89 -5.48 -23.40 16 17 C 0.02 1.00 5.57 82.85 0.46 1.46 16 18 C -0.13 -3.92 7.50 30.76 0.23 -3.69 16 19 C 0.05 1.52 1.11 0.31 0.00 1.52 16 20 C -0.14 -3.69 5.22 31.52 0.16 -3.53 16 21 C -0.11 -2.19 6.91 31.95 0.22 -1.97 16 22 C -0.12 -2.34 6.84 31.74 0.22 -2.12 16 23 C -0.10 -2.52 6.45 31.18 0.20 -2.32 16 24 H 0.29 14.46 8.30 -92.71 -0.77 13.69 16 25 H 0.09 4.48 4.34 -2.91 -0.01 4.47 16 26 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 27 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 28 H 0.12 4.18 8.04 -2.91 -0.02 4.15 16 29 H 0.07 2.68 6.67 -2.39 -0.02 2.66 16 30 H 0.03 1.32 5.52 -2.39 -0.01 1.31 16 31 H 0.05 2.21 6.28 -2.39 -0.01 2.19 16 32 H 0.05 2.27 7.95 -2.39 -0.02 2.25 16 33 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.09 2.26 8.04 -2.39 -0.02 2.25 16 35 H 0.07 1.97 5.51 -2.39 -0.01 1.95 16 36 H 0.06 1.69 7.88 -2.39 -0.02 1.67 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.71 7.91 -2.39 -0.02 1.69 16 42 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -58.99 314.77 0.45 -58.54 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.92 Total: 23.94 kcal Atomic # 6 Polarization: -62.71 SS G_CDS: 3.03 Total: -59.69 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -5.17 Total: -69.60 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.80 kcal Total: -58.99 0.45 -58.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235513795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.223 kcal (2) G-P(sol) polarization free energy of solvation -58.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds