Wall clock time and date at job start Mon Mar 30 2020 01:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48500 * 109.46894 * 275.40232 * 3 2 1 5 5 H 1.48501 * 109.47044 * 35.40126 * 3 2 1 6 6 H 1.48498 * 109.47240 * 155.40264 * 3 2 1 7 7 C 1.39947 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99212 * 341.97929 * 7 2 1 9 9 C 1.41390 * 120.00484 * 161.98391 * 7 2 1 10 10 C 1.40733 * 120.24068 * 330.03369 * 9 7 2 11 11 C 1.37602 * 119.74664 * 180.31969 * 10 9 7 12 12 C 1.38658 * 120.24183 * 359.66039 * 11 10 9 13 13 C 1.38610 * 120.50721 * 0.02562 * 12 11 10 14 14 C 1.37639 * 120.24361 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.12731 * 179.97438 * 14 13 12 16 16 N 1.46896 * 109.47348 * 260.00501 * 15 14 13 17 17 C 1.48124 * 111.00329 * 170.00038 * 16 15 14 18 18 C 1.53084 * 86.04457 * 223.03374 * 17 16 15 19 19 C 1.48367 * 111.08445 * 70.53731 * 16 15 14 20 20 C 1.53478 * 115.24123 * 266.54317 * 18 17 16 21 21 C 1.55089 * 103.95603 * 206.58811 * 20 18 17 22 22 C 1.54967 * 102.87257 * 37.22376 * 21 20 18 23 23 C 1.53083 * 115.49056 * 140.17996 * 18 17 16 24 24 H 0.97001 * 120.00123 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.13283 * 0.02562 * 10 9 7 26 26 H 1.07992 * 119.87972 * 179.68432 * 11 10 9 27 27 H 1.08005 * 119.74787 * 180.02562 * 12 11 10 28 28 H 1.07995 * 119.88178 * 179.97438 * 13 12 11 29 29 H 1.08998 * 109.46970 * 139.99870 * 15 14 13 30 30 H 1.08999 * 109.46802 * 20.00061 * 15 14 13 31 31 H 1.08999 * 113.80590 * 108.72226 * 17 16 15 32 32 H 1.09002 * 113.80134 * 337.34100 * 17 16 15 33 33 H 1.09002 * 113.69288 * 22.63259 * 19 16 15 34 34 H 1.09008 * 113.98067 * 251.18975 * 19 16 15 35 35 H 1.08998 * 110.53394 * 325.20872 * 20 18 17 36 36 H 1.09003 * 110.53394 * 87.97625 * 20 18 17 37 37 H 1.09000 * 110.73453 * 278.87679 * 21 20 18 38 38 H 1.09005 * 110.73353 * 155.56686 * 21 20 18 39 39 H 1.08995 * 110.47747 * 203.80595 * 22 21 20 40 40 H 1.08994 * 110.47672 * 81.17977 * 22 21 20 41 41 H 1.09009 * 110.09830 * 249.15787 * 23 18 17 42 42 H 1.08995 * 110.10457 * 10.70555 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3755 2.1123 -1.3939 5 1 1.5014 2.6170 0.8111 6 1 3.5922 1.4099 0.5828 7 6 2.0080 -1.2119 0.0005 8 1 1.5076 -2.1242 0.2903 9 6 3.3699 -1.2422 -0.3781 10 6 3.8676 -0.3112 -1.3088 11 6 5.1933 -0.3540 -1.6751 12 6 6.0393 -1.3053 -1.1255 13 6 5.5615 -2.2229 -0.2031 14 6 4.2389 -2.1993 0.1771 15 6 3.7220 -3.1987 1.1797 16 7 3.0280 -4.2850 0.4753 17 6 2.7156 -5.4013 1.3974 18 6 3.1807 -6.3242 0.2681 19 6 3.9879 -5.1387 -0.2670 20 6 2.0700 -6.8321 -0.6614 21 6 2.6205 -8.1776 -1.2016 22 6 3.3599 -8.7661 0.0266 23 6 4.0048 -7.5376 0.7061 24 1 -0.4850 0.8400 0.0004 25 1 3.2106 0.4310 -1.7375 26 1 5.5764 0.3561 -2.3929 27 1 7.0786 -1.3314 -1.4184 28 1 6.2292 -2.9598 0.2183 29 1 3.0281 -2.7051 1.8601 30 1 4.5572 -3.6091 1.7472 31 1 1.6554 -5.4939 1.6328 32 1 3.3522 -5.4327 2.2816 33 1 5.0063 -5.0900 0.1185 34 1 3.9368 -5.0245 -1.3499 35 1 1.1479 -6.9929 -0.1030 36 1 1.9054 -6.1306 -1.4793 37 1 3.3143 -8.0080 -2.0249 38 1 1.8053 -8.8317 -1.5110 39 1 4.1267 -9.4720 -0.2922 40 1 2.6533 -9.2483 0.7021 41 1 5.0382 -7.4271 0.3772 42 1 3.9666 -7.6449 1.7901 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235516785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:06 Heat of formation + Delta-G solvation = 37.539348 kcal Electronic energy + Delta-G solvation = -20978.620546 eV Core-core repulsion = 18116.230657 eV Total energy + Delta-G solvation = -2862.389889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33928 -37.84965 -35.78283 -33.51546 -31.48009 -30.26123 -28.68517 -28.19820 -25.80279 -25.42541 -24.31190 -21.49774 -21.31515 -20.60221 -19.31210 -18.09425 -17.24698 -15.81448 -15.73289 -15.32280 -14.84986 -14.31911 -14.03542 -13.86809 -13.54554 -13.42405 -13.15473 -12.66292 -12.29426 -12.07871 -11.90844 -11.57588 -11.46946 -11.09207 -10.94372 -10.91059 -10.76766 -10.70503 -10.55049 -10.49670 -10.18907 -10.00640 -9.95372 -9.63136 -9.35685 -9.05991 -8.10259 -7.57621 -7.44709 -6.85605 -4.36969 2.61997 2.74374 3.16455 3.25619 3.37317 4.04517 4.37450 4.54846 4.60025 4.65837 4.93553 5.20898 5.35121 5.45171 5.53103 5.58362 5.70772 5.72842 5.86019 5.88935 5.91597 5.91704 6.01074 6.07683 6.10218 6.12964 6.14107 6.23541 6.32692 6.38236 6.41194 6.46592 6.57950 6.70056 6.75821 6.99780 7.05129 7.26432 7.48000 7.66473 7.76416 7.82165 8.03107 8.22593 8.53514 8.79526 8.94073 10.15956 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.005483 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.312713 B = 5105.346880 C = 5805.401870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.083 3.917 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.246 1.246 7 C -0.433 4.433 8 H 0.106 0.894 9 C 0.109 3.891 10 C -0.239 4.239 11 C -0.079 4.079 12 C -0.249 4.249 13 C -0.075 4.075 14 C -0.179 4.179 15 C 0.090 3.910 16 N -0.455 5.455 17 C 0.008 3.992 18 C -0.091 4.091 19 C 0.024 3.976 20 C -0.093 4.093 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.113 4.113 24 H 0.283 0.717 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.022 0.978 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 -11.471 1.288 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.169 1.169 7 C -0.461 4.461 8 H 0.123 0.877 9 C 0.106 3.894 10 C -0.258 4.258 11 C -0.098 4.098 12 C -0.269 4.269 13 C -0.094 4.094 14 C -0.180 4.180 15 C -0.038 4.038 16 N -0.177 5.177 17 C -0.121 4.121 18 C -0.091 4.091 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.151 4.151 24 H 0.093 0.907 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.405 -11.018 0.988 11.907 hybrid contribution 1.031 0.659 0.410 1.290 sum 5.435 -10.359 1.398 11.782 Atomic orbital electron populations 1.69713 1.08055 1.29942 1.35485 1.26197 0.94650 1.01588 0.91084 0.86397 0.81341 0.80219 0.78673 1.19878 1.22089 1.16890 1.19660 0.92906 0.96231 1.37350 0.87659 1.17509 0.92818 0.89920 0.89185 1.21038 0.95535 1.04822 1.04445 1.20582 0.93949 0.97157 0.98092 1.20291 0.98060 1.02187 1.06348 1.20467 0.94672 0.97211 0.97022 1.19452 0.92770 1.02242 1.03559 1.21173 0.95727 0.91975 0.94889 1.68767 1.30063 1.03220 1.15630 1.23946 1.01628 0.91944 0.94579 1.22366 0.96598 0.93515 0.96662 1.23839 0.94718 0.91248 1.00705 1.22018 0.96649 0.95894 0.98520 1.22560 0.99455 0.96794 0.97509 1.22377 0.99205 0.97168 0.97272 1.22100 0.99016 0.94011 0.99981 0.90701 0.88437 0.89209 0.89266 0.89510 0.90154 0.95984 0.89880 0.92137 0.92094 0.89994 0.91457 0.90734 0.91656 0.91925 0.92189 0.91928 0.91799 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.77 13.93 55.55 0.77 -21.00 16 2 C 0.08 2.20 5.41 -17.34 -0.09 2.11 16 3 Si 0.91 21.20 24.52 -169.99 -4.17 17.03 16 4 H -0.27 -6.25 6.71 56.52 0.38 -5.87 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.25 -5.91 6.85 56.52 0.39 -5.52 16 7 C -0.43 -11.69 8.60 -37.74 -0.32 -12.01 16 8 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 9 C 0.11 2.78 5.10 -106.83 -0.55 2.24 16 10 C -0.24 -5.93 7.17 -38.87 -0.28 -6.21 16 11 C -0.08 -1.78 10.02 -39.66 -0.40 -2.18 16 12 C -0.25 -5.32 10.05 -39.29 -0.39 -5.72 16 13 C -0.07 -1.59 9.46 -39.66 -0.38 -1.97 16 14 C -0.18 -4.09 5.03 -103.91 -0.52 -4.61 16 15 C 0.09 1.81 4.16 -4.98 -0.02 1.79 16 16 N -0.46 -8.60 5.95 -242.62 -1.44 -10.05 16 17 C 0.01 0.12 7.13 -3.11 -0.02 0.10 16 18 C -0.09 -1.25 1.16 -154.22 -0.18 -1.43 16 19 C 0.02 0.39 6.41 -2.97 -0.02 0.37 16 20 C -0.09 -1.24 6.18 -25.38 -0.16 -1.40 16 21 C -0.13 -1.37 6.91 -24.59 -0.17 -1.54 16 22 C -0.12 -1.24 6.85 -24.91 -0.17 -1.41 16 23 C -0.11 -1.29 6.33 -25.91 -0.16 -1.45 16 24 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 25 H 0.10 2.43 4.74 -52.49 -0.25 2.18 16 26 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 28 H 0.09 1.62 8.03 -52.49 -0.42 1.20 16 29 H 0.08 1.74 7.43 -51.93 -0.39 1.36 16 30 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 31 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 32 H 0.06 0.86 7.74 -51.93 -0.40 0.46 16 33 H 0.06 0.97 7.74 -51.93 -0.40 0.57 16 34 H 0.08 1.44 8.01 -51.92 -0.42 1.02 16 35 H 0.07 0.87 8.04 -51.93 -0.42 0.46 16 36 H 0.07 1.12 7.87 -51.93 -0.41 0.71 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.72 7.90 -51.92 -0.41 0.31 16 42 H 0.06 0.68 7.90 -51.93 -0.41 0.27 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -27.43 326.18 -10.57 -38.00 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.82 Total: 4.40 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -3.83 Total: -33.30 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: -0.67 Total: -31.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.17 Total: 17.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.43 -10.57 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235516785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.537 kcal (2) G-P(sol) polarization free energy of solvation -27.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds