Wall clock time and date at job start Mon Mar 30 2020 01:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99691 * 2 1 4 4 H 1.48503 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47447 * 299.99465 * 3 2 1 6 6 H 1.48503 * 109.47108 * 60.00022 * 3 2 1 7 7 C 1.39943 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99569 * 163.24101 * 7 2 1 9 9 C 1.41389 * 120.00243 * 342.96787 * 7 2 1 10 10 C 1.40740 * 120.24136 * 334.42688 * 9 7 2 11 11 C 1.37603 * 119.74327 * 179.74222 * 10 9 7 12 12 C 1.38660 * 120.24406 * 0.54106 * 11 10 9 13 13 C 1.38614 * 120.50462 * 359.73474 * 12 11 10 14 14 C 1.37631 * 120.24909 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.13081 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47323 * 260.02323 * 15 14 13 17 17 C 1.47544 * 110.99842 * 69.87518 * 16 15 14 18 18 C 1.54580 * 107.32607 * 123.21846 * 17 16 15 19 19 C 1.53737 * 102.82595 * 20.93389 * 18 17 16 20 20 C 1.52327 * 116.25209 * 197.17664 * 19 18 17 21 21 C 1.54050 * 86.61648 * 216.62180 * 20 19 18 22 22 C 1.52320 * 116.24680 * 94.86489 * 19 18 17 23 23 C 1.48126 * 110.99910 * 190.85542 * 16 15 14 24 24 H 0.96995 * 119.99921 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.13143 * 0.02562 * 10 9 7 26 26 H 1.07998 * 119.87599 * 180.29600 * 11 10 9 27 27 H 1.08007 * 119.74543 * 179.76197 * 12 11 10 28 28 H 1.07999 * 119.87506 * 180.02562 * 13 12 11 29 29 H 1.09000 * 109.46886 * 20.02800 * 15 14 13 30 30 H 1.09005 * 109.47173 * 140.01911 * 15 14 13 31 31 H 1.09001 * 109.87527 * 242.65040 * 17 16 15 32 32 H 1.09004 * 109.87911 * 3.78365 * 17 16 15 33 33 H 1.09000 * 110.74018 * 139.26820 * 18 17 16 34 34 H 1.09004 * 110.73852 * 262.41807 * 18 17 16 35 35 H 1.09002 * 113.68527 * 331.05306 * 20 19 18 36 36 H 1.08999 * 113.68637 * 102.19327 * 20 19 18 37 37 H 1.08998 * 113.57073 * 269.70918 * 21 20 19 38 38 H 1.08995 * 113.56937 * 138.95135 * 21 20 19 39 39 H 1.09008 * 113.68991 * 257.81181 * 22 19 18 40 40 H 1.08998 * 113.68887 * 28.95185 * 22 19 18 41 41 H 1.09004 * 110.40235 * 333.90349 * 23 16 15 42 42 H 1.08998 * 110.40310 * 96.32091 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0537 -1.2319 -0.2692 9 6 1.3476 -2.4094 0.3597 10 6 0.2207 -2.3722 1.2020 11 6 -0.4174 -3.5434 1.5407 12 6 0.0528 -4.7578 1.0646 13 6 1.1653 -4.8069 0.2391 14 6 1.8157 -3.6475 -0.1175 15 6 3.0252 -3.7040 -1.0146 16 7 4.2437 -3.5991 -0.2009 17 6 4.4477 -4.8178 0.6053 18 6 5.8433 -5.3780 0.2478 19 6 6.5614 -4.1538 -0.3432 20 6 7.8120 -4.4380 -1.1651 21 6 8.3931 -3.1465 -0.5588 22 6 7.4225 -3.3477 0.6205 23 6 5.4359 -3.3902 -1.0549 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1447 -1.4278 1.5773 26 1 -1.2852 -3.5169 2.1830 27 1 -0.4519 -5.6725 1.3387 28 1 1.5225 -5.7583 -0.1263 29 1 3.0310 -4.6491 -1.5576 30 1 2.9900 -2.8775 -1.7245 31 1 4.4081 -4.5712 1.6663 32 1 3.6804 -5.5538 0.3651 33 1 6.3572 -5.7330 1.1411 34 1 5.7616 -6.1752 -0.4912 35 1 8.3404 -5.3413 -0.8602 36 1 7.6505 -4.3823 -2.2416 37 1 8.1826 -2.2548 -1.1491 38 1 9.4430 -3.2307 -0.2783 39 1 6.9517 -2.4259 0.9624 40 1 7.8398 -3.9398 1.4350 41 1 5.2674 -3.8019 -2.0500 42 1 5.6772 -2.3291 -1.1176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235529568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:23 Heat of formation + Delta-G solvation = 37.590835 kcal Electronic energy + Delta-G solvation = -21067.643886 eV Core-core repulsion = 18205.256229 eV Total energy + Delta-G solvation = -2862.387656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.13533 -37.75461 -35.81709 -33.53995 -31.40512 -29.41636 -29.18033 -27.28023 -25.74364 -25.31067 -24.20003 -21.91474 -20.96813 -20.64818 -19.25791 -18.16693 -17.04421 -15.53860 -15.32699 -15.14860 -15.09071 -14.49415 -14.00158 -13.62249 -13.51416 -12.90133 -12.65194 -12.46655 -12.35627 -12.12275 -11.75866 -11.52033 -11.44095 -11.24240 -11.06554 -10.94522 -10.89579 -10.57726 -10.49646 -10.26301 -10.20229 -10.05178 -9.86493 -9.40372 -9.20241 -9.07377 -7.58120 -7.28617 -7.22577 -6.66675 -4.23170 2.83774 3.03892 3.13373 3.19926 3.31323 4.01483 4.46579 4.56932 4.69364 4.72818 4.88760 5.01736 5.19776 5.48067 5.56508 5.63516 5.74128 5.81488 5.84527 5.90063 5.93875 6.02079 6.10810 6.12040 6.18472 6.26405 6.31375 6.38114 6.48149 6.52881 6.55869 6.57553 6.61659 6.93295 7.19174 7.35193 7.46806 7.64290 7.71615 7.82566 8.02431 8.16864 8.23403 8.41137 8.76828 9.03367 9.10584 10.28212 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.006740 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.952975 B = 4153.547547 C = 5610.584051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.445 4.445 8 H 0.090 0.910 9 C 0.131 3.869 10 C -0.165 4.165 11 C -0.107 4.107 12 C -0.246 4.246 13 C -0.086 4.086 14 C -0.191 4.191 15 C 0.121 3.879 16 N -0.511 5.511 17 C 0.051 3.949 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.128 4.128 21 C -0.141 4.141 22 C -0.121 4.121 23 C 0.066 3.934 24 H 0.277 0.723 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.015 0.985 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.642 -5.151 -1.247 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.475 4.475 8 H 0.108 0.892 9 C 0.128 3.872 10 C -0.184 4.184 11 C -0.125 4.125 12 C -0.266 4.266 13 C -0.105 4.105 14 C -0.193 4.193 15 C -0.005 4.005 16 N -0.234 5.234 17 C -0.077 4.077 18 C -0.167 4.167 19 C -0.089 4.089 20 C -0.166 4.166 21 C -0.178 4.178 22 C -0.159 4.159 23 C -0.061 4.061 24 H 0.088 0.912 25 H 0.133 0.867 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.365 -4.548 -0.949 12.278 hybrid contribution 0.204 0.019 -0.498 0.539 sum 11.569 -4.529 -1.447 12.508 Atomic orbital electron populations 1.69853 1.07586 1.28837 1.36095 1.25966 0.94632 1.01295 0.92474 0.86356 0.81303 0.81324 0.78315 1.18251 1.20290 1.19937 1.19745 0.98208 0.90493 1.39012 0.89241 1.17373 0.90355 0.91545 0.87952 1.21335 0.99320 0.96590 1.01156 1.20659 0.98529 0.93492 0.99856 1.20272 1.01784 0.96010 1.08529 1.20347 0.96209 0.95563 0.98389 1.19451 0.99918 0.93584 1.06354 1.20794 0.87786 0.98223 0.93701 1.63709 1.01338 1.35414 1.22975 1.22762 0.94626 0.91112 0.99192 1.22612 0.96986 0.96855 1.00297 1.21931 0.93780 0.96119 0.97077 1.22700 0.96582 0.97992 0.99354 1.22911 0.98597 0.98036 0.98265 1.22658 0.96501 1.00637 0.96085 1.22617 0.89083 0.99921 0.94502 0.91198 0.86680 0.89802 0.89941 0.90126 0.96733 0.90771 0.91186 0.92834 0.91385 0.91979 0.90339 0.91607 0.90232 0.91951 0.90624 0.90489 0.94059 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.81 10.98 55.55 0.61 -20.20 16 2 C 0.07 1.84 5.15 -17.34 -0.09 1.76 16 3 Si 0.90 19.01 29.59 -169.99 -5.03 13.98 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.44 -11.66 8.19 -37.75 -0.31 -11.97 16 8 H 0.09 2.31 6.84 -52.48 -0.36 1.95 16 9 C 0.13 3.46 5.56 -106.82 -0.59 2.86 16 10 C -0.16 -4.36 8.69 -38.87 -0.34 -4.70 16 11 C -0.11 -2.59 10.02 -39.66 -0.40 -2.98 16 12 C -0.25 -5.68 10.05 -39.29 -0.39 -6.08 16 13 C -0.09 -1.96 8.81 -39.66 -0.35 -2.31 16 14 C -0.19 -4.56 5.00 -103.92 -0.52 -5.08 16 15 C 0.12 2.52 3.89 -4.98 -0.02 2.50 16 16 N -0.51 -9.63 4.89 -233.11 -1.14 -10.77 16 17 C 0.05 0.87 6.42 -2.64 -0.02 0.85 16 18 C -0.13 -1.74 6.34 -25.52 -0.16 -1.91 16 19 C -0.09 -1.17 0.93 -154.60 -0.14 -1.31 16 20 C -0.13 -1.40 7.45 -26.53 -0.20 -1.60 16 21 C -0.14 -1.51 7.99 -25.67 -0.21 -1.71 16 22 C -0.12 -1.51 7.38 -26.53 -0.20 -1.71 16 23 C 0.07 1.05 5.96 -2.89 -0.02 1.03 16 24 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 25 H 0.12 3.15 6.21 -52.49 -0.33 2.83 16 26 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.08 1.64 7.64 -52.49 -0.40 1.24 16 29 H 0.01 0.28 7.82 -51.93 -0.41 -0.12 16 30 H 0.07 1.61 7.27 -51.93 -0.38 1.23 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 0.94 6.20 -51.93 -0.32 0.62 16 33 H 0.07 0.83 7.99 -51.93 -0.42 0.42 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.06 8.12 -51.92 -0.42 0.64 16 40 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 41 H 0.04 0.63 7.80 -51.93 -0.40 0.22 16 42 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -27.04 329.88 -11.32 -38.36 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.79 Total: 6.01 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: -3.95 Total: -32.35 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: -0.53 Total: -30.97 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.04 -11.32 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.953 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds