Wall clock time and date at job start Mon Mar 30 2020 01:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99691 * 2 1 4 4 H 1.48503 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47447 * 299.99465 * 3 2 1 6 6 H 1.48503 * 109.47108 * 60.00022 * 3 2 1 7 7 C 1.39943 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99569 * 163.24101 * 7 2 1 9 9 C 1.41389 * 120.00243 * 342.96787 * 7 2 1 10 10 C 1.40740 * 120.24136 * 334.42688 * 9 7 2 11 11 C 1.37603 * 119.74327 * 179.74222 * 10 9 7 12 12 C 1.38660 * 120.24406 * 0.54106 * 11 10 9 13 13 C 1.38614 * 120.50462 * 359.73474 * 12 11 10 14 14 C 1.37631 * 120.24909 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.13081 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47323 * 260.02323 * 15 14 13 17 17 C 1.47544 * 110.99842 * 69.87518 * 16 15 14 18 18 C 1.54580 * 107.32607 * 123.21846 * 17 16 15 19 19 C 1.53737 * 102.82595 * 20.93389 * 18 17 16 20 20 C 1.52327 * 116.25209 * 197.17664 * 19 18 17 21 21 C 1.54050 * 86.61648 * 216.62180 * 20 19 18 22 22 C 1.52320 * 116.24680 * 94.86489 * 19 18 17 23 23 C 1.48126 * 110.99910 * 190.85542 * 16 15 14 24 24 H 0.96995 * 119.99921 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.13143 * 0.02562 * 10 9 7 26 26 H 1.07998 * 119.87599 * 180.29600 * 11 10 9 27 27 H 1.08007 * 119.74543 * 179.76197 * 12 11 10 28 28 H 1.07999 * 119.87506 * 180.02562 * 13 12 11 29 29 H 1.09000 * 109.46886 * 20.02800 * 15 14 13 30 30 H 1.09005 * 109.47173 * 140.01911 * 15 14 13 31 31 H 1.09001 * 109.87527 * 242.65040 * 17 16 15 32 32 H 1.09004 * 109.87911 * 3.78365 * 17 16 15 33 33 H 1.09000 * 110.74018 * 139.26820 * 18 17 16 34 34 H 1.09004 * 110.73852 * 262.41807 * 18 17 16 35 35 H 1.09002 * 113.68527 * 331.05306 * 20 19 18 36 36 H 1.08999 * 113.68637 * 102.19327 * 20 19 18 37 37 H 1.08998 * 113.57073 * 269.70918 * 21 20 19 38 38 H 1.08995 * 113.56937 * 138.95135 * 21 20 19 39 39 H 1.09008 * 113.68991 * 257.81181 * 22 19 18 40 40 H 1.08998 * 113.68887 * 28.95185 * 22 19 18 41 41 H 1.09004 * 110.40235 * 333.90349 * 23 16 15 42 42 H 1.08998 * 110.40310 * 96.32091 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0537 -1.2319 -0.2692 9 6 1.3476 -2.4094 0.3597 10 6 0.2207 -2.3722 1.2020 11 6 -0.4174 -3.5434 1.5407 12 6 0.0528 -4.7578 1.0646 13 6 1.1653 -4.8069 0.2391 14 6 1.8157 -3.6475 -0.1175 15 6 3.0252 -3.7040 -1.0146 16 7 4.2437 -3.5991 -0.2009 17 6 4.4477 -4.8178 0.6053 18 6 5.8433 -5.3780 0.2478 19 6 6.5614 -4.1538 -0.3432 20 6 7.8120 -4.4380 -1.1651 21 6 8.3931 -3.1465 -0.5588 22 6 7.4225 -3.3477 0.6205 23 6 5.4359 -3.3902 -1.0549 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1447 -1.4278 1.5773 26 1 -1.2852 -3.5169 2.1830 27 1 -0.4519 -5.6725 1.3387 28 1 1.5225 -5.7583 -0.1263 29 1 3.0310 -4.6491 -1.5576 30 1 2.9900 -2.8775 -1.7245 31 1 4.4081 -4.5712 1.6663 32 1 3.6804 -5.5538 0.3651 33 1 6.3572 -5.7330 1.1411 34 1 5.7616 -6.1752 -0.4912 35 1 8.3404 -5.3413 -0.8602 36 1 7.6505 -4.3823 -2.2416 37 1 8.1826 -2.2548 -1.1491 38 1 9.4430 -3.2307 -0.2783 39 1 6.9517 -2.4259 0.9624 40 1 7.8398 -3.9398 1.4350 41 1 5.2674 -3.8019 -2.0500 42 1 5.6772 -2.3291 -1.1176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235529568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:22 Heat of formation + Delta-G solvation = 24.892642 kcal Electronic energy + Delta-G solvation = -21068.194520 eV Core-core repulsion = 18205.256229 eV Total energy + Delta-G solvation = -2862.938291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.26703 -39.50978 -37.17973 -35.45150 -32.96650 -31.31433 -30.64574 -28.60814 -27.21362 -26.59554 -25.78806 -22.98198 -22.81153 -22.16466 -20.95175 -19.22457 -18.96494 -17.17250 -16.68702 -16.58460 -16.29103 -16.02046 -15.54637 -15.37133 -14.90943 -14.37924 -14.14757 -13.96303 -13.66111 -13.35290 -13.33631 -13.02935 -12.90109 -12.78554 -12.69324 -12.49424 -12.33920 -12.10701 -12.02435 -11.80244 -11.29432 -11.25823 -11.04895 -11.03303 -10.96915 -10.85600 -9.21254 -9.18300 -8.96915 -8.56347 -6.21568 1.01392 1.14953 1.38371 1.52122 1.54654 2.23871 2.80313 3.20433 3.53174 3.70855 3.76002 3.94815 4.02542 4.07650 4.33922 4.35170 4.42728 4.52147 4.55062 4.61640 4.72239 4.78167 4.84658 4.90507 4.92069 4.93719 5.00811 5.08805 5.11853 5.15543 5.21113 5.27493 5.36116 5.41311 5.51881 5.56997 5.59371 5.82109 6.04051 6.21287 6.25914 6.34334 6.37627 6.50480 6.81258 7.08289 7.16312 8.40757 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.006740 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.952975 B = 4153.547547 C = 5610.584051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.033 3.967 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.470 4.470 8 H 0.084 0.916 9 C 0.100 3.900 10 C -0.195 4.195 11 C -0.115 4.115 12 C -0.245 4.245 13 C -0.091 4.091 14 C -0.195 4.195 15 C 0.132 3.868 16 N -0.533 5.533 17 C 0.050 3.950 18 C -0.118 4.118 19 C -0.092 4.092 20 C -0.116 4.116 21 C -0.134 4.134 22 C -0.126 4.126 23 C 0.066 3.934 24 H 0.284 0.716 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.585 -6.512 -1.617 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.181 4.181 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.500 4.500 8 H 0.102 0.898 9 C 0.097 3.903 10 C -0.215 4.215 11 C -0.133 4.133 12 C -0.264 4.264 13 C -0.109 4.109 14 C -0.197 4.197 15 C 0.005 3.995 16 N -0.257 5.257 17 C -0.078 4.078 18 C -0.156 4.156 19 C -0.093 4.093 20 C -0.154 4.154 21 C -0.171 4.171 22 C -0.163 4.163 23 C -0.061 4.061 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.309 -5.922 -1.320 14.627 hybrid contribution -0.456 0.343 -0.355 0.672 sum 12.853 -5.580 -1.675 14.112 Atomic orbital electron populations 1.69910 1.08909 1.29985 1.36965 1.26726 0.95339 1.04322 0.91714 0.85319 0.79699 0.77048 0.78640 1.18259 1.19258 1.19383 1.19849 0.98064 0.91525 1.40530 0.89836 1.17729 0.90984 0.92877 0.88695 1.21314 1.00675 0.96738 1.02741 1.20925 0.99005 0.93356 1.00046 1.20664 1.01596 0.96607 1.07535 1.20684 0.95887 0.96379 0.97975 1.19847 1.00747 0.93203 1.05922 1.20594 0.87794 0.98102 0.92981 1.63527 1.01680 1.36837 1.23638 1.22726 0.96894 0.90319 0.97832 1.22558 0.94610 0.97037 1.01369 1.21951 0.93861 0.95672 0.97772 1.22679 0.94703 0.98725 0.99263 1.22877 0.99275 0.97924 0.97073 1.22707 0.96931 0.99677 0.97001 1.22615 0.88996 0.99803 0.94710 0.90599 0.88680 0.87866 0.86921 0.87268 0.95264 0.92627 0.92995 0.93460 0.89681 0.90695 0.88436 0.91164 0.90761 0.90053 0.93094 0.89108 0.93468 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.86 10.98 21.83 0.24 -44.62 16 2 C 0.03 1.70 5.15 85.26 0.44 2.13 16 3 Si 0.97 39.96 29.59 68.60 2.03 41.99 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.47 -25.60 8.19 23.46 0.19 -25.41 16 8 H 0.08 4.50 6.84 -2.91 -0.02 4.48 16 9 C 0.10 5.46 5.56 -21.29 -0.12 5.34 16 10 C -0.20 -10.69 8.69 22.73 0.20 -10.49 16 11 C -0.11 -5.58 10.02 22.22 0.22 -5.36 16 12 C -0.24 -10.94 10.05 22.46 0.23 -10.71 16 13 C -0.09 -4.02 8.81 22.22 0.20 -3.82 16 14 C -0.20 -9.42 5.00 -19.41 -0.10 -9.52 16 15 C 0.13 5.52 3.89 85.56 0.33 5.85 16 16 N -0.53 -20.14 4.89 -891.41 -4.36 -24.49 16 17 C 0.05 1.66 6.42 86.72 0.56 2.22 16 18 C -0.12 -2.88 6.34 31.38 0.20 -2.68 16 19 C -0.09 -2.24 0.93 -52.24 -0.05 -2.29 16 20 C -0.12 -2.15 7.45 30.73 0.23 -1.92 16 21 C -0.13 -2.53 7.99 31.28 0.25 -2.28 16 22 C -0.13 -2.92 7.38 30.73 0.23 -2.69 16 23 C 0.07 2.05 5.96 86.24 0.51 2.56 16 24 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 25 H 0.10 5.48 6.21 -2.91 -0.02 5.47 16 26 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 27 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 28 H 0.11 4.17 7.64 -2.91 -0.02 4.15 16 29 H 0.03 1.11 7.82 -2.39 -0.02 1.09 16 30 H 0.06 2.49 7.27 -2.38 -0.02 2.47 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.60 6.20 -2.39 -0.01 1.59 16 33 H 0.08 1.81 7.99 -2.39 -0.02 1.79 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.42 8.12 -2.38 -0.02 1.40 16 40 H 0.09 1.85 8.05 -2.39 -0.02 1.83 16 41 H 0.05 1.39 7.80 -2.39 -0.02 1.37 16 42 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 Total: -1.00 -59.72 329.88 2.41 -57.30 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.98 Total: 28.88 kcal Atomic # 6 Polarization: -62.58 SS G_CDS: 3.52 Total: -59.06 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -4.12 Total: -69.11 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -59.72 2.41 -57.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.196 kcal (2) G-P(sol) polarization free energy of solvation -59.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds