Wall clock time and date at job start Mon Mar 30 2020 01:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38946 * 119.23150 * 2 1 4 4 C 1.36842 * 119.84059 * 179.97438 * 3 2 1 5 5 C 1.41137 * 118.41652 * 359.72339 * 4 3 2 6 6 C 1.40757 * 120.73772 * 180.28946 * 5 4 3 7 7 H 1.08004 * 120.00591 * 207.39744 * 6 5 4 8 8 C 1.40104 * 119.99742 * 27.39582 * 6 5 4 9 9 N 1.30758 * 119.99905 * 13.19752 * 8 6 5 10 10 Si 1.86798 * 119.99983 * 193.20017 * 8 6 5 11 11 H 1.48495 * 109.47403 * 60.00078 * 10 8 6 12 12 H 1.48504 * 109.47055 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47359 * 299.99569 * 10 8 6 14 14 C 1.42087 * 118.53720 * 0.53581 * 5 4 3 15 15 C 1.47072 * 120.01624 * 179.73180 * 14 5 4 16 16 C 1.31758 * 118.11683 * 63.31740 * 15 14 5 17 17 C 1.50106 * 123.75914 * 180.39314 * 16 15 14 18 18 C 1.53001 * 110.13273 * 342.82632 * 17 16 15 19 19 C 1.52999 * 109.63086 * 290.07257 * 18 17 16 20 20 C 1.53004 * 109.79102 * 169.58320 * 18 17 16 21 21 C 1.53359 * 108.51761 * 49.78260 * 18 17 16 22 22 C 1.50095 * 118.11501 * 243.29464 * 15 14 5 23 23 N 1.31667 * 119.22878 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46865 * 270.02253 * 1 2 3 25 25 H 1.08998 * 109.47122 * 30.01665 * 1 2 3 26 26 H 1.08998 * 109.47377 * 150.02010 * 1 2 3 27 27 H 1.07996 * 120.07318 * 359.95677 * 3 2 1 28 28 H 1.08005 * 120.78859 * 180.02562 * 4 3 2 29 29 H 0.97003 * 119.99991 * 179.97438 * 9 8 6 30 30 H 1.07995 * 118.12569 * 0.37216 * 16 15 14 31 31 H 1.09001 * 109.36064 * 222.62267 * 17 16 15 32 32 H 1.08995 * 109.35981 * 103.03120 * 17 16 15 33 33 H 1.09002 * 109.47284 * 179.02285 * 19 18 17 34 34 H 1.09002 * 109.47116 * 59.02611 * 19 18 17 35 35 H 1.08998 * 109.46858 * 299.02217 * 19 18 17 36 36 H 1.09002 * 109.46945 * 180.49156 * 20 18 17 37 37 H 1.09002 * 109.47046 * 300.48992 * 20 18 17 38 38 H 1.09002 * 109.47029 * 60.49102 * 20 18 17 39 39 H 1.08994 * 109.63081 * 51.60742 * 21 18 17 40 40 H 1.09003 * 109.63371 * 172.00293 * 21 18 17 41 41 H 1.08999 * 109.36378 * 42.64714 * 22 15 14 42 42 H 1.09000 * 109.25461 * 282.98477 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2125 0.0000 4 6 3.5539 1.2271 0.0005 5 6 4.2387 -0.0070 0.0071 6 6 5.6456 -0.0491 0.0140 7 1 6.1628 -0.8963 -0.4117 8 6 6.3752 1.0083 0.5731 9 7 5.7700 1.9017 1.3116 10 14 8.2125 1.1417 0.2636 11 1 8.4610 1.2663 -1.1951 12 1 8.7464 2.3391 0.9612 13 1 8.8910 -0.0744 0.7793 14 6 3.4766 -1.2062 0.0011 15 6 4.1568 -2.5102 0.0017 16 6 4.9018 -2.8215 1.0429 17 6 5.6576 -4.1120 1.1718 18 6 5.1150 -5.1416 0.1787 19 6 3.7153 -5.5839 0.6101 20 6 6.0455 -6.3552 0.1305 21 6 5.0450 -4.4907 -1.2082 22 6 3.9620 -3.4101 -1.1837 23 7 2.1499 -1.1490 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6342 2.1412 -0.0007 28 1 4.0968 2.1607 0.0010 29 1 6.2752 2.6335 1.6990 30 1 4.9731 -2.1071 1.8497 31 1 5.5475 -4.4954 2.1862 32 1 6.7134 -3.9343 0.9675 33 1 3.3243 -6.3042 -0.1085 34 1 3.0564 -4.7165 0.6502 35 1 3.7681 -6.0461 1.5958 36 1 5.6588 -7.0813 -0.5848 37 1 7.0417 -6.0373 -0.1771 38 1 6.0987 -6.8117 1.1188 39 1 6.0072 -4.0392 -1.4497 40 1 4.7968 -5.2452 -1.9547 41 1 4.0192 -2.8203 -2.0985 42 1 2.9818 -3.8824 -1.1191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242327588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:11 Heat of formation + Delta-G solvation = 4.936920 kcal Electronic energy + Delta-G solvation = -21159.894261 eV Core-core repulsion = 18296.090625 eV Total energy + Delta-G solvation = -2863.803636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.25962 -38.08850 -34.29072 -33.39746 -30.92188 -30.26522 -30.16832 -27.79733 -27.01014 -26.27473 -23.92389 -22.59412 -21.43752 -20.60438 -19.23509 -17.31605 -16.47062 -15.54226 -15.42811 -14.52061 -14.31035 -14.01066 -13.82095 -13.59879 -13.18664 -12.95122 -12.62415 -12.37123 -11.95119 -11.78115 -11.74156 -11.60148 -11.52821 -11.41882 -11.40176 -11.21369 -11.06662 -10.91671 -10.78377 -10.54704 -10.13602 -10.02900 -9.68102 -9.50438 -9.34147 -8.37961 -7.99376 -7.73004 -7.30246 -6.81893 -4.42919 2.53445 2.85715 3.00481 3.03513 3.17656 3.34322 3.84911 4.57903 5.01199 5.12018 5.13999 5.50190 5.61590 5.72901 5.77840 5.79950 5.93130 5.98157 6.06921 6.10164 6.11518 6.13762 6.18275 6.29506 6.37315 6.41598 6.45251 6.46945 6.50370 6.54368 6.57014 6.66626 6.78849 6.86470 6.90896 7.05178 7.14378 7.30439 7.52980 7.74708 7.86145 7.99541 8.06522 8.46577 8.68346 8.76743 9.67338 10.06865 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.008424 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.569031 B = 3322.967988 C = 5159.438316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.015 4.015 3 C -0.146 4.146 4 C -0.132 4.132 5 C 0.080 3.920 6 C -0.435 4.435 7 H 0.084 0.916 8 C 0.073 3.927 9 N -0.793 5.793 10 Si 0.909 3.091 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.263 1.263 14 C 0.021 3.979 15 C -0.018 4.018 16 C -0.157 4.157 17 C -0.068 4.068 18 C -0.066 4.066 19 C -0.141 4.141 20 C -0.138 4.138 21 C -0.106 4.106 22 C -0.073 4.073 23 N -0.453 5.453 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.283 0.717 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 -8.038 -1.679 8.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.156 4.156 3 C -0.167 4.167 4 C -0.158 4.158 5 C 0.076 3.924 6 C -0.465 4.465 7 H 0.102 0.898 8 C -0.145 4.145 9 N -0.418 5.418 10 Si 0.734 3.266 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.187 1.187 14 C -0.119 4.119 15 C -0.019 4.019 16 C -0.177 4.177 17 C -0.105 4.105 18 C -0.066 4.066 19 C -0.199 4.199 20 C -0.196 4.196 21 C -0.143 4.143 22 C -0.110 4.110 23 N -0.161 5.161 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.261 -8.564 -1.528 8.704 hybrid contribution 1.351 1.268 0.062 1.854 sum 1.612 -7.296 -1.466 7.615 Atomic orbital electron populations 1.20264 0.91797 1.00635 1.00307 1.20237 0.94724 0.88735 1.11877 1.21217 0.95469 0.96978 1.03017 1.21390 0.92554 0.98909 1.02927 1.18395 0.94086 0.90803 0.89142 1.19443 0.91011 1.03669 1.32345 0.89763 1.25990 1.01349 0.94351 0.92801 1.69747 1.38742 1.11018 1.22302 0.86328 0.81747 0.78727 0.79840 1.18729 1.20292 1.18704 1.19825 0.88252 0.92163 1.11650 1.18936 0.96621 0.92021 0.94351 1.22212 0.99755 0.96877 0.98808 1.20407 0.98837 0.93079 0.98197 1.20583 0.95529 0.94568 0.95894 1.21912 0.96495 1.01478 0.99978 1.21854 0.99174 0.97384 1.01169 1.21654 0.99545 0.97430 0.95696 1.20328 0.98455 0.95304 0.96913 1.66975 1.09773 1.29012 1.10356 0.93371 0.93096 0.92741 0.88679 0.85710 0.90604 0.87813 0.92031 0.91649 0.93437 0.91186 0.93421 0.93057 0.92893 0.93011 0.91980 0.92501 0.91927 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.15 36.01 0.37 -0.98 16 2 C -0.02 -0.36 6.79 -82.40 -0.56 -0.92 16 3 C -0.15 -3.47 9.64 -39.83 -0.38 -3.86 16 4 C -0.13 -3.41 8.72 -38.99 -0.34 -3.75 16 5 C 0.08 2.10 5.56 -106.37 -0.59 1.51 16 6 C -0.44 -11.05 7.77 -37.93 -0.29 -11.35 16 7 H 0.08 2.09 7.10 -52.48 -0.37 1.72 16 8 C 0.07 1.78 5.24 -17.31 -0.09 1.69 16 9 N -0.79 -19.86 10.92 55.56 0.61 -19.26 16 10 Si 0.91 18.23 29.58 -169.99 -5.03 13.20 16 11 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 14 C 0.02 0.52 6.03 -82.40 -0.50 0.02 16 15 C -0.02 -0.39 3.97 -103.22 -0.41 -0.80 16 16 C -0.16 -3.18 7.89 -36.48 -0.29 -3.47 16 17 C -0.07 -1.10 4.87 -28.17 -0.14 -1.24 16 18 C -0.07 -0.94 0.79 -154.32 -0.12 -1.06 16 19 C -0.14 -2.00 7.79 37.16 0.29 -1.71 16 20 C -0.14 -1.63 8.49 37.16 0.32 -1.31 16 21 C -0.11 -1.60 4.94 -26.54 -0.13 -1.73 16 22 C -0.07 -1.33 5.17 -28.17 -0.15 -1.48 16 23 N -0.45 -11.22 10.20 -5.56 -0.06 -11.27 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 28 H 0.13 3.26 6.31 -52.48 -0.33 2.93 16 29 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 30 H 0.10 2.37 7.88 -52.49 -0.41 1.95 16 31 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.16 5.67 -51.93 -0.29 0.87 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.28 6.91 -51.93 -0.36 0.92 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -27.07 331.72 -9.31 -36.39 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.82 Total: 6.38 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: -3.02 Total: -30.44 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.55 Total: -30.53 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.07 -9.31 -36.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242327588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.325 kcal (2) G-P(sol) polarization free energy of solvation -27.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds