Wall clock time and date at job start Mon Mar 30 2020 01:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38946 * 119.23150 * 2 1 4 4 C 1.36842 * 119.84059 * 179.97438 * 3 2 1 5 5 C 1.41137 * 118.41652 * 359.72339 * 4 3 2 6 6 C 1.40757 * 120.73772 * 180.28946 * 5 4 3 7 7 H 1.08004 * 120.00591 * 207.39744 * 6 5 4 8 8 C 1.40104 * 119.99742 * 27.39582 * 6 5 4 9 9 N 1.30758 * 119.99905 * 13.19752 * 8 6 5 10 10 Si 1.86798 * 119.99983 * 193.20017 * 8 6 5 11 11 H 1.48495 * 109.47403 * 60.00078 * 10 8 6 12 12 H 1.48504 * 109.47055 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47359 * 299.99569 * 10 8 6 14 14 C 1.42087 * 118.53720 * 0.53581 * 5 4 3 15 15 C 1.47072 * 120.01624 * 179.73180 * 14 5 4 16 16 C 1.31758 * 118.11683 * 63.31740 * 15 14 5 17 17 C 1.50106 * 123.75914 * 180.39314 * 16 15 14 18 18 C 1.53001 * 110.13273 * 342.82632 * 17 16 15 19 19 C 1.52999 * 109.63086 * 290.07257 * 18 17 16 20 20 C 1.53004 * 109.79102 * 169.58320 * 18 17 16 21 21 C 1.53359 * 108.51761 * 49.78260 * 18 17 16 22 22 C 1.50095 * 118.11501 * 243.29464 * 15 14 5 23 23 N 1.31667 * 119.22878 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46865 * 270.02253 * 1 2 3 25 25 H 1.08998 * 109.47122 * 30.01665 * 1 2 3 26 26 H 1.08998 * 109.47377 * 150.02010 * 1 2 3 27 27 H 1.07996 * 120.07318 * 359.95677 * 3 2 1 28 28 H 1.08005 * 120.78859 * 180.02562 * 4 3 2 29 29 H 0.97003 * 119.99991 * 179.97438 * 9 8 6 30 30 H 1.07995 * 118.12569 * 0.37216 * 16 15 14 31 31 H 1.09001 * 109.36064 * 222.62267 * 17 16 15 32 32 H 1.08995 * 109.35981 * 103.03120 * 17 16 15 33 33 H 1.09002 * 109.47284 * 179.02285 * 19 18 17 34 34 H 1.09002 * 109.47116 * 59.02611 * 19 18 17 35 35 H 1.08998 * 109.46858 * 299.02217 * 19 18 17 36 36 H 1.09002 * 109.46945 * 180.49156 * 20 18 17 37 37 H 1.09002 * 109.47046 * 300.48992 * 20 18 17 38 38 H 1.09002 * 109.47029 * 60.49102 * 20 18 17 39 39 H 1.08994 * 109.63081 * 51.60742 * 21 18 17 40 40 H 1.09003 * 109.63371 * 172.00293 * 21 18 17 41 41 H 1.08999 * 109.36378 * 42.64714 * 22 15 14 42 42 H 1.09000 * 109.25461 * 282.98477 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2125 0.0000 4 6 3.5539 1.2271 0.0005 5 6 4.2387 -0.0070 0.0071 6 6 5.6456 -0.0491 0.0140 7 1 6.1628 -0.8963 -0.4117 8 6 6.3752 1.0083 0.5731 9 7 5.7700 1.9017 1.3116 10 14 8.2125 1.1417 0.2636 11 1 8.4610 1.2663 -1.1951 12 1 8.7464 2.3391 0.9612 13 1 8.8910 -0.0744 0.7793 14 6 3.4766 -1.2062 0.0011 15 6 4.1568 -2.5102 0.0017 16 6 4.9018 -2.8215 1.0429 17 6 5.6576 -4.1120 1.1718 18 6 5.1150 -5.1416 0.1787 19 6 3.7153 -5.5839 0.6101 20 6 6.0455 -6.3552 0.1305 21 6 5.0450 -4.4907 -1.2082 22 6 3.9620 -3.4101 -1.1837 23 7 2.1499 -1.1490 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6342 2.1412 -0.0007 28 1 4.0968 2.1607 0.0010 29 1 6.2752 2.6335 1.6990 30 1 4.9731 -2.1071 1.8497 31 1 5.5475 -4.4954 2.1862 32 1 6.7134 -3.9343 0.9675 33 1 3.3243 -6.3042 -0.1085 34 1 3.0564 -4.7165 0.6502 35 1 3.7681 -6.0461 1.5958 36 1 5.6588 -7.0813 -0.5848 37 1 7.0417 -6.0373 -0.1771 38 1 6.0987 -6.8117 1.1188 39 1 6.0072 -4.0392 -1.4497 40 1 4.7968 -5.2452 -1.9547 41 1 4.0192 -2.8203 -2.0985 42 1 2.9818 -3.8824 -1.1191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242327588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:10 Heat of formation + Delta-G solvation = -7.136984 kcal Electronic energy + Delta-G solvation = -21160.417825 eV Core-core repulsion = 18296.090625 eV Total energy + Delta-G solvation = -2864.327200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82048 -39.69633 -36.13152 -34.93468 -32.73176 -31.93593 -31.59933 -29.53994 -28.09594 -27.65870 -25.66382 -23.99090 -23.20068 -22.43845 -20.61008 -19.21948 -17.92715 -17.37318 -16.97623 -16.21396 -15.75857 -15.58438 -15.24843 -14.92772 -14.69962 -14.49914 -14.15222 -13.96643 -13.47019 -13.33228 -13.19088 -13.08763 -13.00952 -12.79637 -12.72145 -12.62371 -12.56574 -12.43450 -12.21500 -12.13393 -11.68502 -11.31189 -11.19869 -11.03828 -10.90534 -10.24818 -9.88985 -9.48565 -9.12370 -8.65539 -6.36185 0.68494 1.01874 1.35079 1.46088 1.50502 1.63323 2.16052 2.71913 3.62458 3.78662 3.85267 3.99022 4.12969 4.38811 4.41514 4.50044 4.57564 4.61715 4.64628 4.72604 4.83208 4.89499 4.94747 4.97874 4.98928 5.01084 5.03620 5.09387 5.15383 5.17384 5.18193 5.22437 5.32943 5.35656 5.40551 5.48010 5.53093 5.67275 5.81018 5.86848 6.04229 6.10359 6.40030 6.56110 6.77502 6.85728 7.76785 8.25512 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.008424 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.569031 B = 3322.967988 C = 5159.438316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.026 4.026 3 C -0.154 4.154 4 C -0.156 4.156 5 C 0.047 3.953 6 C -0.456 4.456 7 H 0.080 0.920 8 C 0.034 3.966 9 N -0.824 5.824 10 Si 0.978 3.022 11 H -0.259 1.259 12 H -0.268 1.268 13 H -0.256 1.256 14 C 0.007 3.993 15 C -0.037 4.037 16 C -0.150 4.150 17 C -0.066 4.066 18 C -0.061 4.061 19 C -0.139 4.139 20 C -0.132 4.132 21 C -0.100 4.100 22 C -0.065 4.065 23 N -0.470 5.470 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.290 0.710 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.333 -9.847 -2.055 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.166 4.166 3 C -0.174 4.174 4 C -0.182 4.182 5 C 0.043 3.957 6 C -0.486 4.486 7 H 0.098 0.902 8 C -0.181 4.181 9 N -0.450 5.450 10 Si 0.799 3.201 11 H -0.183 1.183 12 H -0.192 1.192 13 H -0.180 1.180 14 C -0.132 4.132 15 C -0.038 4.038 16 C -0.169 4.169 17 C -0.103 4.103 18 C -0.061 4.061 19 C -0.196 4.196 20 C -0.190 4.190 21 C -0.138 4.138 22 C -0.102 4.102 23 N -0.179 5.179 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.131 0.869 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.870 -10.378 -1.902 10.586 hybrid contribution 1.020 1.883 0.233 2.154 sum 1.890 -8.494 -1.669 8.861 Atomic orbital electron populations 1.20318 0.88217 1.02292 1.01616 1.21082 0.97236 0.88265 1.10001 1.21526 0.94938 0.98496 1.02406 1.21443 0.93695 0.98486 1.04565 1.18784 0.95068 0.91608 0.90254 1.19538 0.91049 1.04505 1.33471 0.90156 1.26814 1.05859 0.93507 0.91924 1.69802 1.40667 1.11633 1.22903 0.85289 0.75898 0.79126 0.79801 1.18319 1.19196 1.18033 1.20432 0.88653 0.93527 1.10587 1.19131 0.97097 0.91492 0.96082 1.22275 0.99506 0.97996 0.97155 1.20473 0.98505 0.91476 0.99855 1.20575 0.96235 0.94992 0.94345 1.21873 0.95805 1.00633 1.01265 1.21792 0.98586 0.96153 1.02424 1.21650 0.97966 0.96911 0.97245 1.20265 0.99862 0.95501 0.94594 1.67120 1.09833 1.29752 1.11176 0.92090 0.90485 0.92061 0.86000 0.86922 0.89931 0.91553 0.90704 0.90900 0.91608 0.94292 0.92327 0.91445 0.92420 0.91924 0.92369 0.89826 0.93507 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.39 10.15 71.24 0.72 -1.67 16 2 C -0.03 -1.20 6.79 42.75 0.29 -0.91 16 3 C -0.15 -7.40 9.64 22.11 0.21 -7.19 16 4 C -0.16 -8.40 8.72 22.65 0.20 -8.20 16 5 C 0.05 2.59 5.56 -21.00 -0.12 2.48 16 6 C -0.46 -24.17 7.77 23.34 0.18 -23.99 16 7 H 0.08 4.16 7.10 -2.91 -0.02 4.14 16 8 C 0.03 1.70 5.24 85.31 0.45 2.15 16 9 N -0.82 -42.65 10.92 21.85 0.24 -42.41 16 10 Si 0.98 37.65 29.58 68.60 2.03 39.68 16 11 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 12 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 13 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 14 C 0.01 0.39 6.03 42.27 0.25 0.64 16 15 C -0.04 -1.64 3.97 -18.47 -0.07 -1.71 16 16 C -0.15 -6.23 7.89 24.77 0.20 -6.04 16 17 C -0.07 -2.06 4.87 29.66 0.14 -1.92 16 18 C -0.06 -1.61 0.79 -52.06 -0.04 -1.65 16 19 C -0.14 -3.63 7.79 71.98 0.56 -3.07 16 20 C -0.13 -2.59 8.49 71.98 0.61 -1.98 16 21 C -0.10 -2.86 4.94 30.72 0.15 -2.70 16 22 C -0.06 -2.39 5.17 29.66 0.15 -2.23 16 23 N -0.47 -23.86 10.20 -171.50 -1.75 -25.61 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.12 5.05 8.06 -2.91 -0.02 5.02 16 28 H 0.11 6.20 6.31 -2.91 -0.02 6.18 16 29 H 0.29 13.60 8.29 -92.71 -0.77 12.83 16 30 H 0.07 3.21 7.88 -2.91 -0.02 3.19 16 31 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 32 H 0.07 2.18 8.11 -2.39 -0.02 2.16 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 1.26 5.67 -2.39 -0.01 1.25 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.71 8.12 -2.39 -0.02 1.69 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 2.58 6.91 -2.39 -0.02 2.56 16 Total: -1.00 -61.28 331.72 5.39 -55.89 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.98 Total: 30.44 kcal Atomic # 6 Polarization: -61.88 SS G_CDS: 3.89 Total: -57.99 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -1.51 Total: -68.02 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -61.28 5.39 -55.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242327588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.751 kcal (2) G-P(sol) polarization free energy of solvation -61.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds