Wall clock time and date at job start Mon Mar 30 2020 01:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31199 * 119.78945 * 2 1 4 4 C 1.33206 * 121.70485 * 180.26692 * 3 2 1 5 5 C 1.47252 * 119.47479 * 179.75226 * 4 3 2 6 6 C 1.30691 * 112.49964 * 354.08461 * 5 4 3 7 7 C 1.51139 * 122.96696 * 174.63457 * 6 5 4 8 8 C 1.53031 * 109.45810 * 80.72673 * 7 6 5 9 9 C 1.52193 * 111.35510 * 323.65047 * 8 7 6 10 10 C 1.51706 * 106.99053 * 281.76746 * 9 8 7 11 11 C 1.53009 * 111.44636 * 67.10592 * 10 9 8 12 12 C 1.48622 * 112.50763 * 174.10665 * 5 4 3 13 13 C 1.40150 * 121.05712 * 359.47775 * 4 3 2 14 14 C 1.36505 * 119.44954 * 0.25292 * 13 4 3 15 15 C 1.41014 * 119.78977 * 179.74897 * 2 1 3 16 16 C 1.40964 * 120.53148 * 0.02562 * 15 2 1 17 17 H 1.07997 * 120.00425 * 329.26477 * 16 15 2 18 18 C 1.40044 * 119.99427 * 149.26471 * 16 15 2 19 19 N 1.30772 * 120.00393 * 348.26222 * 18 16 15 20 20 Si 1.86810 * 119.99785 * 168.26169 * 18 16 15 21 21 H 1.48502 * 109.46651 * 60.00076 * 20 18 16 22 22 H 1.48495 * 109.47055 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46880 * 300.00336 * 20 18 16 24 24 H 1.08999 * 109.47233 * 270.25174 * 1 2 3 25 25 H 1.08994 * 109.47235 * 30.25288 * 1 2 3 26 26 H 1.09002 * 109.47034 * 150.25334 * 1 2 3 27 27 H 1.07995 * 118.51831 * 354.61957 * 6 5 4 28 28 H 1.08998 * 109.47231 * 320.73080 * 7 6 5 29 29 H 1.08997 * 109.47748 * 200.71844 * 7 6 5 30 30 H 1.08997 * 109.10465 * 203.16920 * 8 7 6 31 31 H 1.08993 * 109.05612 * 84.09816 * 8 7 6 32 32 H 1.09001 * 109.94820 * 162.40314 * 9 8 7 33 33 H 1.08999 * 109.94975 * 41.13527 * 9 8 7 34 34 H 1.09006 * 109.08567 * 187.61053 * 10 9 8 35 35 H 1.08994 * 109.08470 * 306.59914 * 10 9 8 36 36 H 1.08997 * 109.69882 * 177.18260 * 11 10 9 37 37 H 1.08998 * 109.70491 * 297.79155 * 11 10 9 38 38 H 1.09011 * 108.98763 * 300.42045 * 12 5 4 39 39 H 1.08997 * 108.99338 * 59.15650 * 12 5 4 40 40 H 1.07999 * 120.27274 * 180.23235 * 13 4 3 41 41 H 1.08006 * 120.78446 * 179.97438 * 14 13 4 42 42 H 0.97003 * 120.00221 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1386 0.0000 4 6 3.4901 1.1831 -0.0053 5 6 4.1714 2.4886 -0.0106 6 6 3.3376 3.4874 -0.1337 7 6 3.7683 4.9336 -0.0489 8 6 4.3593 5.3691 -1.3916 9 6 5.1464 4.2409 -2.0428 10 6 6.4904 4.1761 -1.3421 11 6 6.3417 3.7268 0.1129 12 6 5.6459 2.3614 0.1249 13 6 4.2529 0.0074 -0.0001 14 6 3.6210 -1.2025 0.0052 15 6 2.2076 -1.2238 0.0054 16 6 1.5096 -2.4485 0.0102 17 1 0.5436 -2.5177 0.4881 18 6 2.0690 -3.5755 -0.6048 19 7 3.1175 -3.4471 -1.3757 20 14 1.3173 -5.2625 -0.3239 21 1 -0.0920 -5.2605 -0.7921 22 1 2.0886 -6.2805 -1.0814 23 1 1.3572 -5.5871 1.1247 24 1 -0.3634 0.0045 1.0276 25 1 -0.3633 0.8876 -0.5177 26 1 -0.3633 -0.8923 -0.5099 27 1 2.2936 3.2695 -0.3041 28 1 4.5207 5.0434 0.7320 29 1 2.9057 5.5565 0.1874 30 1 5.0218 6.2195 -1.2308 31 1 3.5493 5.6688 -2.0565 32 1 5.2894 4.4507 -3.1028 33 1 4.6159 3.2969 -1.9177 34 1 7.1333 3.4709 -1.8689 35 1 6.9521 5.1631 -1.3649 36 1 7.3258 3.6420 0.5737 37 1 5.7396 4.4511 0.6615 38 1 5.8736 1.8556 1.0634 39 1 6.0276 1.7614 -0.7011 40 1 5.3317 0.0583 -0.0007 41 1 4.1875 -2.1221 0.0088 42 1 3.5051 -4.2278 -1.8013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242503220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:16 Heat of formation + Delta-G solvation = 15.308826 kcal Electronic energy + Delta-G solvation = -20874.068543 eV Core-core repulsion = 18010.714667 eV Total energy + Delta-G solvation = -2863.353876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96016 -39.51059 -36.17734 -34.70776 -33.73081 -32.87569 -31.92529 -28.89904 -28.61371 -27.07504 -25.93054 -23.44878 -22.71086 -21.22819 -20.86920 -19.44793 -18.91560 -17.46301 -16.87625 -16.63589 -16.38989 -15.68833 -15.16678 -14.94898 -14.63803 -14.43167 -14.25918 -13.78268 -13.66876 -13.43257 -13.34498 -13.13832 -12.94409 -12.83580 -12.67166 -12.46819 -12.42279 -12.29130 -12.09136 -11.78107 -11.57050 -11.40029 -11.21151 -10.96966 -10.51813 -10.22253 -9.88716 -9.84646 -8.86730 -8.63477 -6.38454 0.48357 1.04501 1.36870 1.40491 1.49533 1.88151 2.17241 2.80951 3.69737 3.75322 3.97942 4.06519 4.14569 4.28498 4.32637 4.35207 4.47348 4.55282 4.58705 4.69108 4.81391 4.86536 4.93303 4.94654 4.97773 4.99588 5.08232 5.16611 5.19157 5.21562 5.24336 5.28361 5.31309 5.40088 5.41849 5.52112 5.63780 5.71371 5.82131 5.91281 6.02406 6.04538 6.46287 6.51287 6.75561 6.82047 7.74718 8.25890 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031204 B = 0.004606 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.116252 B = 6077.667403 C = 6600.421322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.014 4.014 3 N -0.470 5.470 4 C -0.009 4.009 5 C -0.057 4.057 6 C -0.144 4.144 7 C -0.090 4.090 8 C -0.106 4.106 9 C -0.139 4.139 10 C -0.111 4.111 11 C -0.129 4.129 12 C -0.064 4.064 13 C -0.149 4.149 14 C -0.153 4.153 15 C 0.039 3.961 16 C -0.473 4.473 17 H 0.089 0.911 18 C 0.033 3.967 19 N -0.827 5.827 20 Si 0.987 3.013 21 H -0.256 1.256 22 H -0.269 1.269 23 H -0.259 1.259 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 10.089 0.917 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.157 4.157 3 N -0.179 5.179 4 C -0.145 4.145 5 C -0.058 4.058 6 C -0.164 4.164 7 C -0.127 4.127 8 C -0.143 4.143 9 C -0.177 4.177 10 C -0.149 4.149 11 C -0.165 4.165 12 C -0.101 4.101 13 C -0.169 4.169 14 C -0.178 4.178 15 C 0.035 3.965 16 C -0.502 4.502 17 H 0.107 0.893 18 C -0.182 4.182 19 N -0.452 5.452 20 Si 0.807 3.193 21 H -0.180 1.180 22 H -0.194 1.194 23 H -0.183 1.183 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.485 10.699 0.751 11.626 hybrid contribution 0.107 -2.164 -0.168 2.173 sum 4.593 8.535 0.584 9.710 Atomic orbital electron populations 1.20222 0.89039 1.01560 1.01242 1.21645 0.96915 0.88168 1.08965 1.66970 1.09593 1.29843 1.11469 1.20464 0.89126 0.94499 1.10393 1.19164 0.94701 0.90118 1.01778 1.22512 0.98723 0.94330 1.00804 1.21029 1.00878 0.92201 0.98591 1.21336 0.99367 0.97992 0.95639 1.21521 0.97264 0.99900 0.98990 1.21356 0.96550 1.01650 0.95312 1.22024 1.00841 0.95996 0.97659 1.20030 0.89745 0.98988 1.01314 1.21750 0.99965 0.93276 1.01898 1.21324 0.95048 0.96898 1.04556 1.18742 0.92972 0.94257 0.90511 1.19747 1.05078 0.93721 1.31647 0.89296 1.26877 0.94467 1.04986 0.91917 1.69813 1.19956 1.34008 1.21441 0.85164 0.79326 0.75106 0.79664 1.17982 1.19373 1.18290 0.92053 0.92270 0.91545 0.88354 0.89449 0.91170 0.90000 0.92920 0.92059 0.92648 0.93018 0.90590 0.90345 0.89438 0.91703 0.91809 0.85850 0.87424 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.72 9.59 71.24 0.68 -2.04 16 2 C -0.01 -0.72 6.86 43.33 0.30 -0.43 16 3 N -0.47 -23.71 8.40 -171.30 -1.44 -25.15 16 4 C -0.01 -0.42 6.60 41.77 0.28 -0.15 16 5 C -0.06 -2.14 4.24 -17.85 -0.08 -2.21 16 6 C -0.14 -5.07 7.75 26.10 0.20 -4.87 16 7 C -0.09 -2.30 5.55 30.00 0.17 -2.13 16 8 C -0.11 -2.38 5.57 30.34 0.17 -2.21 16 9 C -0.14 -3.57 5.65 29.90 0.17 -3.40 16 10 C -0.11 -2.41 5.18 30.17 0.16 -2.26 16 11 C -0.13 -2.93 5.68 30.68 0.17 -2.76 16 12 C -0.06 -1.96 3.57 29.29 0.10 -1.85 16 13 C -0.15 -7.21 9.02 22.33 0.20 -7.01 16 14 C -0.15 -8.20 8.68 22.63 0.20 -8.00 16 15 C 0.04 2.15 5.53 -21.16 -0.12 2.04 16 16 C -0.47 -24.70 7.99 23.38 0.19 -24.52 16 17 H 0.09 4.38 7.08 -2.91 -0.02 4.36 16 18 C 0.03 1.61 5.24 85.29 0.45 2.06 16 19 N -0.83 -42.68 11.06 21.84 0.24 -42.44 16 20 Si 0.99 36.95 29.58 68.60 2.03 38.98 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 22 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 24 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.07 2.82 6.86 -2.39 -0.02 2.81 16 27 H 0.10 4.06 6.52 -2.91 -0.02 4.04 16 28 H 0.09 1.99 5.12 -2.39 -0.01 1.98 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.44 7.70 -2.39 -0.02 1.42 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.83 4.67 -2.39 -0.01 1.82 16 34 H 0.05 1.14 8.12 -2.38 -0.02 1.12 16 35 H 0.08 1.32 7.82 -2.39 -0.02 1.30 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.92 4.20 -2.39 -0.01 1.91 16 38 H 0.06 2.01 7.82 -2.38 -0.02 1.99 16 39 H 0.06 2.05 7.03 -2.39 -0.02 2.04 16 40 H 0.12 5.21 6.12 -2.91 -0.02 5.19 16 41 H 0.11 5.92 6.50 -2.91 -0.02 5.90 16 42 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 Total: -1.00 -60.45 315.75 5.09 -55.36 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 1.02 Total: 32.96 kcal Atomic # 6 Polarization: -62.96 SS G_CDS: 3.24 Total: -59.72 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -1.20 Total: -67.58 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -60.45 5.09 -55.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242503220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.670 kcal (2) G-P(sol) polarization free energy of solvation -60.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds