Wall clock time and date at job start Mon Mar 30 2020 01:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36176 * 119.94793 * 2 1 4 4 C 1.40962 * 119.89970 * 180.02562 * 3 2 1 5 5 C 1.40938 * 120.09186 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00301 * 330.09212 * 5 4 3 7 7 C 1.40031 * 119.99764 * 150.09069 * 5 4 3 8 8 N 1.30794 * 119.99784 * 161.74851 * 7 5 4 9 9 Si 1.86795 * 119.99871 * 341.74092 * 7 5 4 10 10 H 1.48504 * 109.47100 * 95.42363 * 9 7 5 11 11 H 1.48507 * 109.47011 * 215.41794 * 9 7 5 12 12 H 1.48493 * 109.47692 * 335.41857 * 9 7 5 13 13 C 1.40999 * 119.81269 * 0.02562 * 4 3 2 14 14 C 1.36136 * 119.90061 * 359.97438 * 13 4 3 15 15 C 1.40166 * 119.95352 * 179.73282 * 2 1 3 16 16 C 1.47276 * 119.90149 * 359.97438 * 15 2 1 17 17 C 1.33084 * 119.99854 * 180.02562 * 16 15 2 18 18 C 1.50697 * 120.00259 * 180.02562 * 17 16 15 19 19 C 1.53123 * 109.52652 * 239.87563 * 18 17 16 20 20 C 1.53049 * 109.27465 * 182.50463 * 19 18 17 21 21 N 1.46850 * 109.57529 * 59.08418 * 20 19 18 22 22 C 1.46840 * 111.19591 * 298.28688 * 21 20 19 23 23 C 1.53037 * 109.52488 * 61.74663 * 22 21 20 24 24 H 1.08997 * 109.47609 * 89.99937 * 1 2 3 25 25 H 1.08997 * 109.47341 * 329.99397 * 1 2 3 26 26 H 1.09009 * 109.46757 * 209.99839 * 1 2 3 27 27 H 1.08005 * 120.04844 * 359.97438 * 3 2 1 28 28 H 0.96996 * 119.99775 * 180.02562 * 8 7 5 29 29 H 1.08008 * 120.05219 * 180.02562 * 13 4 3 30 30 H 1.08003 * 119.95236 * 180.02562 * 14 13 4 31 31 H 1.07999 * 120.00479 * 0.02562 * 16 15 2 32 32 H 1.08002 * 120.00169 * 0.02562 * 17 16 15 33 33 H 1.09005 * 109.52301 * 0.02562 * 18 17 16 34 34 H 1.08996 * 109.49754 * 302.37985 * 19 18 17 35 35 H 1.08996 * 109.49895 * 62.49984 * 19 18 17 36 36 H 1.09001 * 109.40733 * 299.06591 * 20 19 18 37 37 H 1.09002 * 109.45760 * 179.13241 * 20 19 18 38 38 H 1.00898 * 110.99950 * 62.38140 * 21 20 19 39 39 H 1.09001 * 109.46755 * 301.72928 * 22 21 20 40 40 H 1.09003 * 109.45973 * 181.75906 * 22 21 20 41 41 H 1.09003 * 109.50720 * 180.87975 * 23 22 21 42 42 H 1.08999 * 109.53929 * 60.77978 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1799 0.0000 4 6 3.5965 1.1787 -0.0005 5 6 4.3041 2.3976 -0.0011 6 1 3.8740 3.2716 -0.4675 7 6 5.5650 2.4753 0.6031 8 7 6.3712 3.4625 0.3093 9 14 6.0954 1.1694 1.8288 10 1 6.8960 0.1315 1.1309 11 1 6.9185 1.7958 2.8945 12 1 4.8937 0.5427 2.4356 13 6 4.2964 -0.0452 -0.0016 14 6 3.6089 -1.2202 -0.0016 15 6 2.2069 -1.2144 0.0057 16 6 1.4673 -2.4880 0.0122 17 6 2.1298 -3.6422 0.0181 18 6 1.3731 -4.9454 0.0241 19 6 1.7420 -5.7456 1.2765 20 6 1.0187 -7.0940 1.2457 21 7 1.4066 -7.8329 0.0374 22 6 1.0186 -7.1051 -1.1775 23 6 1.7431 -5.7578 -1.2200 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 0.8899 0.5139 26 1 -0.3633 -0.8901 0.5139 27 1 1.6468 2.1153 -0.0004 28 1 7.2447 3.5161 0.7275 29 1 5.3765 -0.0507 -0.0016 30 1 4.1442 -2.1582 -0.0020 31 1 0.3873 -2.4853 0.0122 32 1 3.2098 -3.6449 0.0185 33 1 0.3017 -4.7445 0.0223 34 1 2.8190 -5.9117 1.2978 35 1 1.4411 -5.1903 2.1648 36 1 -0.0585 -6.9271 1.2393 37 1 1.2912 -7.6725 2.1284 38 1 2.3954 -8.0338 0.0382 39 1 -0.0586 -6.9382 -1.1726 40 1 1.2910 -7.6918 -2.0549 41 1 1.4429 -5.2111 -2.1140 42 1 2.8202 -5.9235 -1.2393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243897764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:16 Heat of formation + Delta-G solvation = 6.243373 kcal Electronic energy + Delta-G solvation = -20002.877517 eV Core-core repulsion = 17139.130533 eV Total energy + Delta-G solvation = -2863.746984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.04633 -38.22018 -34.74442 -33.62539 -31.96179 -31.20903 -30.90456 -28.77548 -26.32112 -25.27097 -23.10789 -22.90651 -21.47203 -20.65797 -19.97507 -18.65181 -17.11568 -16.39565 -15.65462 -14.85670 -14.77242 -14.60521 -14.27933 -13.82846 -13.58792 -13.43225 -13.08435 -12.78963 -12.56197 -12.38667 -12.35234 -11.87951 -11.82997 -11.59775 -11.46760 -11.30811 -10.88957 -10.85554 -10.63924 -10.57480 -10.52058 -10.27081 -9.84807 -9.62487 -9.29334 -8.91743 -8.48934 -7.71699 -7.12845 -7.10113 -4.54480 1.93747 2.68277 2.98061 3.11588 3.22223 3.41568 3.89399 4.17702 4.48267 4.66633 4.94706 5.01177 5.08284 5.29407 5.31105 5.34198 5.42274 5.59780 5.72685 5.76334 5.78228 5.80260 5.91291 5.91724 5.97266 6.12203 6.15502 6.16604 6.18583 6.34680 6.43460 6.52624 6.70062 6.82028 6.86689 7.07947 7.13903 7.20310 7.24768 7.45205 7.66012 7.79434 7.89134 8.03938 8.22941 8.57038 8.67678 9.90912 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.003995 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.079251 B = 7007.591168 C = 7638.880947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.032 4.032 3 C -0.213 4.213 4 C 0.100 3.900 5 C -0.435 4.435 6 H 0.093 0.907 7 C 0.083 3.917 8 N -0.798 5.798 9 Si 0.915 3.085 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.243 1.243 13 C -0.246 4.246 14 C -0.052 4.052 15 C -0.208 4.208 16 C -0.056 4.056 17 C -0.224 4.224 18 C -0.042 4.042 19 C -0.149 4.149 20 C 0.056 3.944 21 N -0.689 5.689 22 C 0.056 3.944 23 C -0.148 4.148 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.288 0.712 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.339 0.661 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.237 -15.017 0.819 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.033 4.033 3 C -0.232 4.232 4 C 0.097 3.903 5 C -0.462 4.462 6 H 0.111 0.889 7 C -0.138 4.138 8 N -0.421 5.421 9 Si 0.741 3.259 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.166 1.166 13 C -0.265 4.265 14 C -0.070 4.070 15 C -0.209 4.209 16 C -0.074 4.074 17 C -0.242 4.242 18 C -0.060 4.060 19 C -0.188 4.188 20 C -0.074 4.074 21 N -0.317 5.317 22 C -0.074 4.074 23 C -0.188 4.188 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.582 -15.213 0.826 17.018 hybrid contribution 1.252 0.527 0.444 1.429 sum -6.331 -14.686 1.270 16.043 Atomic orbital electron populations 1.20772 0.93475 1.01396 1.01084 1.19324 0.93879 0.93018 0.97032 1.20576 0.93803 0.95857 1.12967 1.17777 0.91973 0.92574 0.87988 1.19571 0.99346 0.97080 1.30203 0.88932 1.26270 0.94914 0.96175 0.96412 1.69680 1.07616 1.29890 1.34907 0.86247 0.79987 0.79980 0.79687 1.19527 1.21691 1.16590 1.20702 0.98141 0.92967 1.14695 1.20497 0.93280 0.96481 0.96724 1.18142 0.92362 0.91367 1.19032 1.21594 0.97671 0.91994 0.96094 1.22891 0.99061 0.92637 1.09622 1.20059 0.98927 0.93307 0.93737 1.22282 1.00699 0.97055 0.98736 1.22043 1.00159 0.92510 0.92702 1.60708 1.22621 1.46210 1.02130 1.22042 1.00154 0.92625 0.92593 1.22280 1.00690 0.97010 0.98777 0.92254 0.92476 0.92435 0.88135 0.90154 0.88294 0.88652 0.88219 0.87858 0.91660 0.92121 0.91398 0.91120 0.90997 0.84413 0.91110 0.90989 0.91395 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.51 36.01 0.34 -1.48 16 2 C -0.03 -0.68 5.88 -104.64 -0.61 -1.29 16 3 C -0.21 -4.94 9.36 -39.29 -0.37 -5.30 16 4 C 0.10 2.53 5.10 -106.80 -0.54 1.98 16 5 C -0.43 -11.58 9.54 -37.89 -0.36 -11.95 16 6 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 7 C 0.08 2.13 5.40 -17.32 -0.09 2.04 16 8 N -0.80 -20.81 13.93 55.55 0.77 -20.03 16 9 Si 0.91 20.67 24.51 -169.99 -4.17 16.50 16 10 H -0.27 -5.92 6.70 56.52 0.38 -5.54 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.24 -5.69 6.87 56.52 0.39 -5.30 16 13 C -0.25 -5.96 7.10 -39.29 -0.28 -6.23 16 14 C -0.05 -1.14 9.33 -39.60 -0.37 -1.51 16 15 C -0.21 -4.35 5.89 -104.76 -0.62 -4.97 16 16 C -0.06 -0.97 8.94 -37.70 -0.34 -1.31 16 17 C -0.22 -3.51 8.21 -36.10 -0.30 -3.81 16 18 C -0.04 -0.52 2.55 -91.65 -0.23 -0.76 16 19 C -0.15 -1.66 5.35 -26.64 -0.14 -1.81 16 20 C 0.06 0.54 6.55 -3.83 -0.03 0.51 16 21 N -0.69 -6.72 6.87 -113.81 -0.78 -7.50 16 22 C 0.06 0.54 6.55 -3.84 -0.03 0.51 16 23 C -0.15 -1.65 5.35 -26.65 -0.14 -1.80 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.87 8.08 -51.93 -0.42 0.46 16 26 H 0.06 0.86 6.28 -51.92 -0.33 0.53 16 27 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 28 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 29 H 0.10 2.38 4.73 -52.48 -0.25 2.14 16 30 H 0.10 1.90 6.13 -52.48 -0.32 1.58 16 31 H 0.10 1.57 6.13 -52.49 -0.32 1.25 16 32 H 0.10 1.72 6.01 -52.49 -0.32 1.40 16 33 H 0.06 0.82 7.81 -51.93 -0.41 0.41 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.34 3.02 8.86 -39.29 -0.35 2.67 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -26.60 328.32 -9.86 -36.46 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.53 Total: 6.78 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: -4.11 Total: -37.16 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: -0.01 Total: -27.54 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.17 Total: 16.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.60 -9.86 -36.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243897764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.705 kcal (2) G-P(sol) polarization free energy of solvation -26.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds