Wall clock time and date at job start Mon Mar 30 2020 01:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36176 * 119.94793 * 2 1 4 4 C 1.40962 * 119.89970 * 180.02562 * 3 2 1 5 5 C 1.40938 * 120.09186 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00301 * 330.09212 * 5 4 3 7 7 C 1.40031 * 119.99764 * 150.09069 * 5 4 3 8 8 N 1.30794 * 119.99784 * 161.74851 * 7 5 4 9 9 Si 1.86795 * 119.99871 * 341.74092 * 7 5 4 10 10 H 1.48504 * 109.47100 * 95.42363 * 9 7 5 11 11 H 1.48507 * 109.47011 * 215.41794 * 9 7 5 12 12 H 1.48493 * 109.47692 * 335.41857 * 9 7 5 13 13 C 1.40999 * 119.81269 * 0.02562 * 4 3 2 14 14 C 1.36136 * 119.90061 * 359.97438 * 13 4 3 15 15 C 1.40166 * 119.95352 * 179.73282 * 2 1 3 16 16 C 1.47276 * 119.90149 * 359.97438 * 15 2 1 17 17 C 1.33084 * 119.99854 * 180.02562 * 16 15 2 18 18 C 1.50697 * 120.00259 * 180.02562 * 17 16 15 19 19 C 1.53123 * 109.52652 * 239.87563 * 18 17 16 20 20 C 1.53049 * 109.27465 * 182.50463 * 19 18 17 21 21 N 1.46850 * 109.57529 * 59.08418 * 20 19 18 22 22 C 1.46840 * 111.19591 * 298.28688 * 21 20 19 23 23 C 1.53037 * 109.52488 * 61.74663 * 22 21 20 24 24 H 1.08997 * 109.47609 * 89.99937 * 1 2 3 25 25 H 1.08997 * 109.47341 * 329.99397 * 1 2 3 26 26 H 1.09009 * 109.46757 * 209.99839 * 1 2 3 27 27 H 1.08005 * 120.04844 * 359.97438 * 3 2 1 28 28 H 0.96996 * 119.99775 * 180.02562 * 8 7 5 29 29 H 1.08008 * 120.05219 * 180.02562 * 13 4 3 30 30 H 1.08003 * 119.95236 * 180.02562 * 14 13 4 31 31 H 1.07999 * 120.00479 * 0.02562 * 16 15 2 32 32 H 1.08002 * 120.00169 * 0.02562 * 17 16 15 33 33 H 1.09005 * 109.52301 * 0.02562 * 18 17 16 34 34 H 1.08996 * 109.49754 * 302.37985 * 19 18 17 35 35 H 1.08996 * 109.49895 * 62.49984 * 19 18 17 36 36 H 1.09001 * 109.40733 * 299.06591 * 20 19 18 37 37 H 1.09002 * 109.45760 * 179.13241 * 20 19 18 38 38 H 1.00898 * 110.99950 * 62.38140 * 21 20 19 39 39 H 1.09001 * 109.46755 * 301.72928 * 22 21 20 40 40 H 1.09003 * 109.45973 * 181.75906 * 22 21 20 41 41 H 1.09003 * 109.50720 * 180.87975 * 23 22 21 42 42 H 1.08999 * 109.53929 * 60.77978 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1799 0.0000 4 6 3.5965 1.1787 -0.0005 5 6 4.3041 2.3976 -0.0011 6 1 3.8740 3.2716 -0.4675 7 6 5.5650 2.4753 0.6031 8 7 6.3712 3.4625 0.3093 9 14 6.0954 1.1694 1.8288 10 1 6.8960 0.1315 1.1309 11 1 6.9185 1.7958 2.8945 12 1 4.8937 0.5427 2.4356 13 6 4.2964 -0.0452 -0.0016 14 6 3.6089 -1.2202 -0.0016 15 6 2.2069 -1.2144 0.0057 16 6 1.4673 -2.4880 0.0122 17 6 2.1298 -3.6422 0.0181 18 6 1.3731 -4.9454 0.0241 19 6 1.7420 -5.7456 1.2765 20 6 1.0187 -7.0940 1.2457 21 7 1.4066 -7.8329 0.0374 22 6 1.0186 -7.1051 -1.1775 23 6 1.7431 -5.7578 -1.2200 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 0.8899 0.5139 26 1 -0.3633 -0.8901 0.5139 27 1 1.6468 2.1153 -0.0004 28 1 7.2447 3.5161 0.7275 29 1 5.3765 -0.0507 -0.0016 30 1 4.1442 -2.1582 -0.0020 31 1 0.3873 -2.4853 0.0122 32 1 3.2098 -3.6449 0.0185 33 1 0.3017 -4.7445 0.0223 34 1 2.8190 -5.9117 1.2978 35 1 1.4411 -5.1903 2.1648 36 1 -0.0585 -6.9271 1.2393 37 1 1.2912 -7.6725 2.1284 38 1 2.3954 -8.0338 0.0382 39 1 -0.0586 -6.9382 -1.1726 40 1 1.2910 -7.6918 -2.0549 41 1 1.4429 -5.2111 -2.1140 42 1 2.8202 -5.9235 -1.2393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243897764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:16 Heat of formation + Delta-G solvation = -8.096728 kcal Electronic energy + Delta-G solvation = -20003.499350 eV Core-core repulsion = 17139.130533 eV Total energy + Delta-G solvation = -2864.368817 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22389 -39.66371 -36.31837 -35.11789 -33.62873 -32.62713 -31.71656 -30.27670 -27.92747 -26.77978 -24.31757 -23.72457 -23.07368 -22.16425 -21.10271 -20.09086 -18.97929 -17.79464 -16.98241 -16.29900 -16.11893 -15.55409 -15.44661 -15.22982 -15.06814 -14.59842 -14.44924 -14.25592 -14.07117 -14.04748 -13.47135 -13.27405 -13.14723 -12.79587 -12.75103 -12.61738 -12.44116 -12.13943 -12.12042 -11.94976 -11.59815 -11.57599 -11.44938 -11.33194 -11.00672 -10.50670 -9.47175 -9.27884 -8.99486 -8.79893 -6.49617 0.32364 0.87741 1.18572 1.30196 1.42183 1.77273 2.06912 2.66280 3.43116 3.49896 3.73503 4.00530 4.07530 4.08814 4.21787 4.25996 4.34940 4.42960 4.49509 4.52532 4.62116 4.68130 4.76449 4.82700 4.89356 4.91570 5.01401 5.02880 5.04890 5.09064 5.09223 5.14767 5.26633 5.33473 5.39740 5.60039 5.63284 5.79372 5.91829 5.98895 6.11620 6.16974 6.27029 6.37251 6.50434 6.68198 6.79446 8.08471 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.003995 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.079251 B = 7007.591168 C = 7638.880947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.041 4.041 3 C -0.227 4.227 4 C 0.078 3.922 5 C -0.479 4.479 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.841 5.841 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.258 1.258 13 C -0.258 4.258 14 C -0.068 4.068 15 C -0.190 4.190 16 C -0.085 4.085 17 C -0.186 4.186 18 C -0.044 4.044 19 C -0.145 4.145 20 C 0.060 3.940 21 N -0.692 5.692 22 C 0.060 3.940 23 C -0.145 4.145 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.296 0.704 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.344 0.656 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 -19.020 1.328 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.041 4.041 3 C -0.247 4.247 4 C 0.076 3.924 5 C -0.508 4.508 6 H 0.077 0.923 7 C -0.166 4.166 8 N -0.466 5.466 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.182 1.182 13 C -0.277 4.277 14 C -0.086 4.086 15 C -0.191 4.191 16 C -0.103 4.103 17 C -0.204 4.204 18 C -0.062 4.062 19 C -0.184 4.184 20 C -0.069 4.069 21 N -0.320 5.320 22 C -0.069 4.069 23 C -0.184 4.184 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.162 0.838 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.404 -19.224 1.329 21.442 hybrid contribution 1.584 1.427 0.218 2.143 sum -7.820 -17.796 1.547 19.500 Atomic orbital electron populations 1.20816 0.89845 1.02987 1.02644 1.19828 0.96652 0.92044 0.95590 1.20796 0.93356 0.97209 1.13308 1.17934 0.93057 0.92484 0.88936 1.19498 1.00958 0.96924 1.33378 0.92263 1.26844 0.94619 0.97820 0.97297 1.69698 1.08481 1.31683 1.36784 0.85470 0.79181 0.78166 0.78190 1.18487 1.19942 1.18151 1.20782 0.98174 0.93411 1.15337 1.20809 0.94238 0.96627 0.96965 1.18691 0.92259 0.93185 1.14917 1.21617 0.98793 0.90579 0.99267 1.23253 0.98989 0.93830 1.04321 1.20140 0.98889 0.91921 0.95260 1.22244 1.00759 0.97742 0.97667 1.22024 1.00049 0.91642 0.93206 1.60716 1.23157 1.46038 1.02136 1.22023 1.00045 0.91768 0.93088 1.22240 1.00747 0.97678 0.97717 0.90541 0.91539 0.90261 0.88029 0.89323 0.88769 0.86459 0.85799 0.88685 0.90900 0.92396 0.91713 0.90898 0.89830 0.83803 0.90888 0.89819 0.91707 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.17 9.51 71.24 0.68 -2.49 16 2 C -0.04 -1.66 5.88 -19.88 -0.12 -1.77 16 3 C -0.23 -10.74 9.36 22.46 0.21 -10.53 16 4 C 0.08 4.12 5.10 -21.27 -0.11 4.01 16 5 C -0.48 -27.32 9.54 23.37 0.22 -27.09 16 6 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 7 C 0.05 2.71 5.40 85.28 0.46 3.17 16 8 N -0.84 -46.27 13.93 21.84 0.30 -45.96 16 9 Si 0.97 43.73 24.51 68.60 1.68 45.41 16 10 H -0.26 -11.16 6.70 99.48 0.67 -10.49 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.26 -12.09 6.87 99.48 0.68 -11.41 16 13 C -0.26 -12.64 7.10 22.46 0.16 -12.48 16 14 C -0.07 -2.94 9.33 22.26 0.21 -2.74 16 15 C -0.19 -7.52 5.89 -19.96 -0.12 -7.64 16 16 C -0.08 -2.64 8.94 23.49 0.21 -2.43 16 17 C -0.19 -5.13 8.21 24.53 0.20 -4.92 16 18 C -0.04 -0.91 2.55 -11.46 -0.03 -0.94 16 19 C -0.14 -2.70 5.35 30.65 0.16 -2.53 16 20 C 0.06 0.94 6.55 86.33 0.57 1.51 16 21 N -0.69 -10.91 6.87 -513.98 -3.53 -14.44 16 22 C 0.06 0.94 6.55 86.33 0.57 1.50 16 23 C -0.14 -2.68 5.35 30.65 0.16 -2.52 16 24 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 26 H 0.08 2.02 6.28 -2.38 -0.01 2.00 16 27 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 28 H 0.30 14.55 8.30 -92.71 -0.77 13.78 16 29 H 0.09 4.62 4.73 -2.91 -0.01 4.60 16 30 H 0.12 4.42 6.13 -2.91 -0.02 4.41 16 31 H 0.12 3.30 6.13 -2.91 -0.02 3.28 16 32 H 0.10 2.83 6.01 -2.91 -0.02 2.81 16 33 H 0.07 1.49 7.81 -2.38 -0.02 1.47 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.34 4.90 8.86 -89.70 -0.79 4.11 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -59.88 328.32 2.04 -57.84 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.15 Total: 25.06 kcal Atomic # 6 Polarization: -71.33 SS G_CDS: 3.44 Total: -67.90 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -3.23 Total: -60.40 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.68 Total: 45.41 kcal Total: -59.88 2.04 -57.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243897764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.738 kcal (2) G-P(sol) polarization free energy of solvation -59.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds