Wall clock time and date at job start Mon Mar 30 2020 01:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99588 * 2 1 4 4 H 1.48494 * 109.46824 * 239.99327 * 3 2 1 5 5 H 1.48491 * 109.47350 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46912 * 119.99802 * 3 2 1 7 7 C 1.37876 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00401 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99403 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46753 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47351 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47252 * 179.97438 * 11 10 9 13 13 C 1.29820 * 118.55085 * 95.00663 * 12 11 10 14 14 C 1.50150 * 123.28044 * 180.39579 * 13 12 11 15 15 N 1.46835 * 110.27526 * 342.91894 * 14 13 12 16 16 C 1.39675 * 110.99916 * 174.31383 * 15 14 13 17 17 C 1.38909 * 120.07682 * 235.77109 * 16 15 14 18 18 C 1.38104 * 119.92467 * 179.74611 * 17 16 15 19 19 C 1.38288 * 120.07232 * 0.55363 * 18 17 16 20 20 C 1.38283 * 120.15369 * 359.70146 * 19 18 17 21 21 C 1.38110 * 120.07007 * 0.02562 * 20 19 18 22 22 C 1.47238 * 110.20422 * 50.93197 * 15 14 13 23 23 C 1.50309 * 118.55571 * 275.01990 * 12 11 10 24 24 H 0.96993 * 120.00305 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47452 * 60.00230 * 9 7 2 26 26 H 1.08997 * 109.47253 * 299.99076 * 9 7 2 27 27 H 1.09001 * 109.47285 * 59.99996 * 10 9 7 28 28 H 1.09000 * 109.47129 * 299.99687 * 10 9 7 29 29 H 1.09001 * 109.46721 * 59.99906 * 11 10 9 30 30 H 1.09000 * 109.46957 * 300.00048 * 11 10 9 31 31 H 1.07996 * 118.36095 * 0.36452 * 13 12 11 32 32 H 1.08998 * 109.33108 * 222.67191 * 14 13 12 33 33 H 1.08999 * 109.33620 * 103.16956 * 14 13 12 34 34 H 1.08001 * 120.04020 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.96736 * 180.27476 * 18 17 16 36 36 H 1.08001 * 119.92689 * 179.71709 * 19 18 17 37 37 H 1.08003 * 119.96620 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.03112 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.63952 * 50.88586 * 22 15 14 40 40 H 1.08998 * 109.63943 * 171.49922 * 22 15 14 41 41 H 1.08997 * 109.42934 * 283.58269 * 23 12 11 42 42 H 1.09004 * 109.42478 * 43.42791 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4599 -6.1324 0.0005 13 6 2.7883 -6.6686 1.1363 14 6 3.7592 -7.8073 1.2598 15 7 3.9440 -8.4618 -0.0416 16 6 4.9387 -9.4399 0.0269 17 6 6.0248 -9.3900 -0.8378 18 6 7.0092 -10.3558 -0.7639 19 6 6.9088 -11.3782 0.1619 20 6 5.8263 -11.4339 1.0206 21 6 4.8412 -10.4681 0.9558 22 6 4.2588 -7.4606 -1.0742 23 6 3.0137 -6.6035 -1.3150 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6243 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6042 -0.8895 29 1 0.8536 -5.0450 -0.8886 30 1 0.8542 -5.0446 0.8914 31 1 2.3412 -6.2757 2.0375 32 1 3.3754 -8.5325 1.9773 33 1 4.7182 -7.4274 1.6121 34 1 6.1016 -8.5943 -1.5640 35 1 7.8561 -10.3152 -1.4328 36 1 7.6777 -12.1348 0.2146 37 1 5.7512 -12.2335 1.7427 38 1 3.9962 -10.5120 1.6271 39 1 5.0780 -6.8277 -0.7332 40 1 4.5413 -7.9642 -1.9987 41 1 2.2605 -7.1963 -1.8340 42 1 3.2797 -5.7410 -1.9261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:38 Heat of formation + Delta-G solvation = 29.934695 kcal Electronic energy + Delta-G solvation = -19661.206321 eV Core-core repulsion = 16798.486670 eV Total energy + Delta-G solvation = -2862.719651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50888 -38.20523 -35.54689 -33.41757 -31.72860 -31.58982 -30.47709 -29.37719 -27.05186 -24.63935 -24.25989 -22.53025 -21.91598 -21.14742 -20.05977 -17.97629 -17.47720 -16.25500 -15.92512 -15.77728 -14.95077 -14.59981 -14.47085 -14.32266 -13.94528 -13.72948 -13.52565 -13.32981 -12.92522 -12.51403 -12.31215 -12.20891 -11.77141 -11.59814 -11.47865 -11.19335 -10.94398 -10.80486 -10.69492 -10.56189 -10.35443 -9.87730 -9.63600 -9.31612 -9.13753 -9.11824 -8.47291 -8.33011 -7.96737 -5.98285 -4.00688 1.19146 1.21319 2.42041 3.33682 3.37992 3.40549 3.44448 3.75613 4.46903 4.58525 4.69509 4.77223 4.91034 4.94269 5.13926 5.20528 5.24671 5.27973 5.36027 5.37155 5.40168 5.51746 5.56146 5.76106 5.80039 5.89127 5.97138 6.01389 6.15990 6.19451 6.20435 6.35643 6.36138 6.54000 6.67599 6.78555 6.86123 6.92731 7.14867 7.20322 7.24924 7.69703 7.85316 8.02317 8.45123 9.06479 9.63158 11.12983 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.039577 B = 0.002830 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.316480 B = 9892.332525 C =10157.759631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.102 4.102 11 C -0.090 4.090 12 C -0.089 4.089 13 C -0.189 4.189 14 C 0.097 3.903 15 N -0.485 5.485 16 C 0.116 3.884 17 C -0.174 4.174 18 C -0.094 4.094 19 C -0.153 4.153 20 C -0.096 4.096 21 C -0.143 4.143 22 C 0.048 3.952 23 C -0.083 4.083 24 H 0.261 0.739 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.316 -22.269 0.017 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.139 4.139 11 C -0.127 4.127 12 C -0.089 4.089 13 C -0.207 4.207 14 C -0.028 4.028 15 N -0.200 5.200 16 C 0.018 3.982 17 C -0.195 4.195 18 C -0.113 4.113 19 C -0.172 4.172 20 C -0.115 4.115 21 C -0.163 4.163 22 C -0.079 4.079 23 C -0.120 4.120 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.638 -22.297 -0.097 24.705 hybrid contribution 1.017 1.295 0.185 1.657 sum 11.656 -21.002 0.088 24.019 Atomic orbital electron populations 1.69954 1.06039 1.26663 1.50915 1.25031 0.94847 0.99216 0.95398 0.86671 0.79597 0.83212 0.78601 1.20263 1.21282 1.20267 1.21235 0.92966 0.91179 1.50495 0.92840 1.19114 0.94031 0.91358 0.97150 1.21589 0.98932 0.93157 1.00235 1.20882 0.96438 0.93230 1.02183 1.21156 0.97595 0.95922 0.94260 1.21893 1.01861 0.98531 0.98395 1.20972 0.98080 0.94914 0.88817 1.59452 1.40123 1.12976 1.07434 1.19075 0.89294 0.94076 0.95754 1.21387 0.94062 1.01401 1.02637 1.21008 0.98136 0.94191 0.97947 1.21050 0.99096 0.99536 0.97533 1.21010 0.93897 0.98052 0.98515 1.20820 1.00157 0.94965 1.00368 1.22422 0.97750 0.92738 0.95001 1.20551 0.96481 0.98923 0.96044 0.92971 0.96652 0.96683 0.93511 0.93493 0.91702 0.91777 0.86673 0.89628 0.93185 0.85441 0.86177 0.86379 0.86042 0.85795 0.93136 0.89711 0.90078 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.10 5.13 -26.73 -0.14 -2.24 16 11 C -0.09 -1.54 5.27 -27.88 -0.15 -1.69 16 12 C -0.09 -1.31 5.15 -100.92 -0.52 -1.83 16 13 C -0.19 -2.59 9.50 -35.96 -0.34 -2.93 16 14 C 0.10 1.16 5.27 -5.28 -0.03 1.13 16 15 N -0.49 -5.87 4.77 -172.54 -0.82 -6.69 16 16 C 0.12 1.32 5.61 -83.79 -0.47 0.85 16 17 C -0.17 -1.80 8.87 -39.38 -0.35 -2.15 16 18 C -0.09 -0.86 10.04 -39.61 -0.40 -1.25 16 19 C -0.15 -1.32 10.04 -39.55 -0.40 -1.72 16 20 C -0.10 -0.86 10.04 -39.61 -0.40 -1.25 16 21 C -0.14 -1.47 9.26 -39.38 -0.36 -1.83 16 22 C 0.05 0.55 4.29 -3.61 -0.02 0.53 16 23 C -0.08 -1.06 6.04 -28.04 -0.17 -1.23 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 30 H 0.06 1.10 7.85 -51.93 -0.41 0.69 16 31 H 0.12 1.55 7.81 -52.49 -0.41 1.15 16 32 H 0.09 0.91 7.13 -51.93 -0.37 0.54 16 33 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.13 1.19 5.78 -52.49 -0.30 0.89 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 38 H 0.12 1.16 7.25 -52.49 -0.38 0.78 16 39 H 0.05 0.59 8.05 -51.93 -0.42 0.18 16 40 H 0.08 0.85 6.49 -51.93 -0.34 0.52 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -30.92 338.61 -11.10 -42.02 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.81 Total: -1.82 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -4.28 Total: -28.94 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: -0.09 Total: -33.19 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.92 -11.10 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.956 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds