Wall clock time and date at job start Mon Mar 30 2020 00:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99839 * 2 1 4 4 H 1.48496 * 109.47275 * 270.00138 * 3 2 1 5 5 H 1.48502 * 109.46803 * 30.00136 * 3 2 1 6 6 H 1.48502 * 109.46798 * 149.99615 * 3 2 1 7 7 C 1.37875 * 120.00149 * 180.02562 * 2 1 3 8 8 C 1.51272 * 120.85168 * 180.02562 * 7 2 1 9 9 C 1.53227 * 108.53628 * 128.62769 * 8 7 2 10 10 C 1.52959 * 109.40488 * 54.62748 * 9 8 7 11 11 H 1.08998 * 109.35203 * 56.47254 * 10 9 8 12 12 N 1.46906 * 109.41164 * 176.29346 * 10 9 8 13 13 C 1.46902 * 110.99927 * 275.35134 * 12 10 9 14 14 C 1.54341 * 110.82517 * 270.89604 * 13 12 10 15 15 C 1.51677 * 105.02162 * 215.56964 * 14 13 12 16 16 C 1.38494 * 130.31134 * 197.09786 * 15 14 13 17 17 C 1.38101 * 120.21488 * 179.80214 * 16 15 14 18 18 C 1.38259 * 119.93316 * 0.02562 * 17 16 15 19 19 C 1.38102 * 119.93732 * 0.02562 * 18 17 16 20 20 C 1.38221 * 109.83529 * 16.91853 * 15 14 13 21 21 C 1.51366 * 109.76137 * 0.15916 * 20 15 14 22 22 C 1.52956 * 109.81702 * 296.40014 * 10 9 8 23 23 C 1.51270 * 120.84840 * 359.97438 * 7 2 1 24 24 H 0.97002 * 120.00414 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.62212 * 248.34598 * 8 7 2 26 26 H 1.09003 * 109.62377 * 8.71858 * 8 7 2 27 27 H 1.09002 * 109.48549 * 294.64456 * 9 8 7 28 28 H 1.08999 * 109.48095 * 174.60775 * 9 8 7 29 29 H 1.00895 * 110.99792 * 39.30803 * 12 10 9 30 30 H 1.09000 * 110.72682 * 34.30650 * 13 12 10 31 31 H 1.08999 * 110.30001 * 334.34822 * 14 13 12 32 32 H 1.08997 * 110.30345 * 96.50521 * 14 13 12 33 33 H 1.07996 * 119.89292 * 359.80556 * 16 15 14 34 34 H 1.08002 * 120.03238 * 179.97438 * 17 16 15 35 35 H 1.08003 * 120.03034 * 180.02562 * 18 17 16 36 36 H 1.07999 * 119.88964 * 179.97438 * 19 18 17 37 37 H 1.08997 * 110.30245 * 223.88980 * 21 20 15 38 38 H 1.08999 * 110.38635 * 101.78269 * 21 20 15 39 39 H 1.09000 * 109.47881 * 183.57776 * 22 10 9 40 40 H 1.08995 * 109.48116 * 303.60510 * 22 10 9 41 41 H 1.08998 * 109.62388 * 111.66026 * 23 7 2 42 42 H 1.08993 * 109.78794 * 351.17702 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9903 -2.1313 1.1345 10 6 3.3396 -3.5072 0.9828 11 1 3.5740 -3.9110 -0.0021 12 7 3.8606 -4.4105 2.0176 13 6 5.1266 -5.0228 1.5930 14 6 4.8702 -6.3365 0.8246 15 6 6.0140 -7.2517 1.2179 16 6 6.4793 -8.4116 0.6211 17 6 7.5554 -9.0878 1.1615 18 6 8.1705 -8.6062 2.3023 19 6 7.7073 -7.4504 2.8994 20 6 6.6292 -6.7700 2.3581 21 6 5.9413 -5.5010 2.8136 22 6 1.8225 -3.3828 1.1335 23 6 1.2677 -2.5151 -0.0005 24 1 -0.4851 0.8400 -0.0004 25 1 3.8778 -1.6000 -0.9543 26 1 3.8981 -0.2072 0.1565 27 1 3.7056 -1.6982 2.0935 28 1 5.0744 -2.2349 1.0898 29 1 3.9692 -3.9282 2.8972 30 1 5.7078 -4.3270 0.9879 31 1 3.9177 -6.7717 1.1269 32 1 4.8796 -6.1542 -0.2500 33 1 5.9991 -8.7885 -0.2697 34 1 7.9156 -9.9923 0.6939 35 1 9.0125 -9.1336 2.7260 36 1 8.1881 -7.0751 3.7907 37 1 6.6799 -4.7498 3.0933 38 1 5.2779 -5.7091 3.6531 39 1 1.3703 -4.3735 1.0879 40 1 1.5891 -2.9204 2.0925 41 1 1.4200 -3.0192 -0.9549 42 1 0.2030 -2.3438 0.1572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255014161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:45 Heat of formation + Delta-G solvation = 5.082537 kcal Electronic energy + Delta-G solvation = -20413.158094 eV Core-core repulsion = 17549.360772 eV Total energy + Delta-G solvation = -2863.797322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.16123 -37.76915 -35.71930 -33.12837 -31.46902 -31.13687 -29.61862 -28.10333 -27.30790 -25.89197 -22.35771 -21.67194 -21.26520 -20.97352 -20.21808 -19.24802 -16.42179 -16.24131 -15.82514 -15.24079 -15.08972 -14.46665 -14.25407 -13.37555 -13.30690 -13.13295 -12.94261 -12.79988 -12.74764 -12.37686 -12.23211 -12.12525 -11.51671 -11.22660 -11.16702 -10.97233 -10.83995 -10.83093 -10.73323 -10.38102 -10.14156 -9.80268 -9.51385 -8.87970 -8.85308 -8.73931 -8.53003 -8.46065 -7.84104 -6.07415 -3.98029 1.29800 1.32253 3.27056 3.35369 3.35642 3.69510 4.37354 4.38142 4.39491 4.74115 4.92851 4.94900 5.07693 5.19008 5.24969 5.43239 5.46304 5.59005 5.73406 5.79102 5.81519 5.86839 5.94261 6.04383 6.14490 6.21637 6.27140 6.35577 6.41876 6.52189 6.64024 6.74094 6.82972 6.89593 6.93878 6.96224 7.07718 7.22588 7.40897 7.59569 7.67857 7.73873 7.89476 7.92897 8.43428 9.00521 9.57014 11.02147 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.041291 B = 0.003633 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.956122 B = 7705.939315 C = 7967.433624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.485 4.485 8 C -0.018 4.018 9 C -0.133 4.133 10 C 0.099 3.901 11 H 0.065 0.935 12 N -0.681 5.681 13 C 0.087 3.913 14 C -0.074 4.074 15 C -0.087 4.087 16 C -0.111 4.111 17 C -0.123 4.123 18 C -0.127 4.127 19 C -0.109 4.109 20 C -0.093 4.093 21 C -0.085 4.085 22 C -0.093 4.093 23 C 0.009 3.991 24 H 0.263 0.737 25 H 0.014 0.986 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.026 0.974 29 H 0.338 0.662 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.036 0.964 40 H 0.047 0.953 41 H 0.001 0.999 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.616 -13.836 4.606 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.504 4.504 8 C -0.056 4.056 9 C -0.172 4.172 10 C -0.009 4.009 11 H 0.083 0.917 12 N -0.311 5.311 13 C -0.023 4.023 14 C -0.112 4.112 15 C -0.087 4.087 16 C -0.129 4.129 17 C -0.141 4.141 18 C -0.145 4.145 19 C -0.128 4.128 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.029 4.029 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.156 0.844 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.050 -14.248 4.410 19.818 hybrid contribution 1.153 1.656 0.115 2.021 sum 14.203 -12.591 4.525 19.513 Atomic orbital electron populations 1.69840 1.06101 1.26795 1.50140 1.24849 0.94707 0.98472 0.94744 0.86707 0.79942 0.83514 0.78437 1.20483 1.21674 1.19110 1.20059 0.89261 0.91624 1.49463 1.19760 0.96876 0.95380 0.93549 1.22212 0.96329 0.97444 1.01255 1.21535 0.96426 0.89726 0.93237 0.91698 1.60847 1.25921 1.37804 1.06500 1.22114 0.90261 0.95039 0.94914 1.21198 0.96484 0.93320 1.00175 1.20793 0.96927 0.95322 0.95679 1.20659 0.97078 0.94946 1.00184 1.21007 0.96531 0.99943 0.96656 1.20984 1.00334 0.96591 0.96562 1.20614 0.96442 0.95604 1.00097 1.20551 0.95617 0.97054 0.96088 1.21241 0.98158 0.93902 0.98882 1.21561 0.92469 0.98082 1.00989 1.19378 0.98575 0.92845 0.92087 0.92663 0.96728 0.94974 0.92937 0.95490 0.84400 0.92595 0.88885 0.91063 0.86300 0.86143 0.86179 0.86467 0.91010 0.89301 0.94552 0.93448 0.98013 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 12.73 55.43 0.71 -25.08 16 2 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 21.12 27.53 -169.99 -4.68 16.44 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.12 6.11 56.52 0.35 -5.78 16 7 C -0.48 -12.78 5.52 -98.92 -0.55 -13.32 16 8 C -0.02 -0.41 5.59 -27.49 -0.15 -0.56 16 9 C -0.13 -2.65 5.18 -26.63 -0.14 -2.78 16 10 C 0.10 1.87 2.24 -67.75 -0.15 1.72 16 11 H 0.06 1.27 7.83 -51.93 -0.41 0.86 16 12 N -0.68 -10.60 6.04 -98.31 -0.59 -11.19 16 13 C 0.09 1.20 3.11 -66.30 -0.21 1.00 16 14 C -0.07 -0.99 6.48 -26.70 -0.17 -1.17 16 15 C -0.09 -1.10 6.15 -104.05 -0.64 -1.74 16 16 C -0.11 -1.25 10.04 -39.54 -0.40 -1.65 16 17 C -0.12 -1.24 10.05 -39.62 -0.40 -1.64 16 18 C -0.13 -1.25 10.05 -39.62 -0.40 -1.65 16 19 C -0.11 -1.19 10.04 -39.54 -0.40 -1.58 16 20 C -0.09 -1.14 6.14 -104.21 -0.64 -1.78 16 21 C -0.08 -1.01 6.23 -26.85 -0.17 -1.17 16 22 C -0.09 -1.97 5.54 -26.66 -0.15 -2.12 16 23 C 0.01 0.23 5.96 -27.51 -0.16 0.06 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.75 4.59 -51.93 -0.24 0.51 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.48 7.41 -51.93 -0.38 0.10 16 29 H 0.34 4.98 8.20 -39.29 -0.32 4.66 16 30 H 0.06 0.83 7.19 -51.93 -0.37 0.46 16 31 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 42 H 0.06 1.56 7.08 -51.93 -0.37 1.20 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -28.16 326.37 -11.24 -39.40 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.77 Total: 1.97 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -4.81 Total: -26.45 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.11 Total: -36.28 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.68 Total: 16.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.16 -11.24 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255014161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.483 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds