Wall clock time and date at job start Mon Mar 30 2020 00:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47308 * 270.00074 * 3 2 1 5 5 H 1.48501 * 109.47431 * 30.00556 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00245 * 3 2 1 7 7 C 1.37878 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99698 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.52304 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27846 * 177.56039 * 10 9 7 12 12 N 1.46853 * 109.52380 * 300.81986 * 11 10 9 13 13 C 1.46898 * 110.99899 * 185.84187 * 12 11 10 14 14 C 1.54341 * 110.81985 * 175.00043 * 13 12 11 15 15 C 1.51377 * 105.17072 * 91.87737 * 14 13 12 16 16 C 1.38500 * 130.38733 * 197.19314 * 15 14 13 17 17 C 1.38106 * 120.21131 * 179.97438 * 16 15 14 18 18 C 1.38255 * 119.93333 * 0.02562 * 17 16 15 19 19 C 1.38097 * 119.93883 * 359.97438 * 18 17 16 20 20 C 1.38215 * 109.75705 * 17.18954 * 15 14 13 21 21 C 1.51365 * 109.75875 * 0.02562 * 20 15 14 22 22 C 1.46845 * 111.19761 * 61.74430 * 12 11 10 23 23 C 1.53040 * 109.52231 * 298.26116 * 22 12 11 24 24 H 0.96998 * 120.00285 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.57843 * 59.83969 * 9 7 2 26 26 H 1.09004 * 109.50247 * 57.61877 * 10 9 7 27 27 H 1.08996 * 109.50073 * 297.50166 * 10 9 7 28 28 H 1.09003 * 109.45887 * 180.80749 * 11 10 9 29 29 H 1.08999 * 109.46572 * 60.83471 * 11 10 9 30 30 H 1.08995 * 110.88480 * 51.48380 * 13 12 11 31 31 H 1.08997 * 110.30661 * 332.95159 * 14 13 12 32 32 H 1.08999 * 110.38520 * 210.84147 * 14 13 12 33 33 H 1.07993 * 119.89327 * 0.02562 * 16 15 14 34 34 H 1.07998 * 120.02914 * 180.27900 * 17 16 15 35 35 H 1.08005 * 120.02893 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.89696 * 179.97438 * 19 18 17 37 37 H 1.08998 * 110.30362 * 101.73847 * 21 20 15 38 38 H 1.09001 * 110.30014 * 223.89088 * 21 20 15 39 39 H 1.09006 * 109.46332 * 58.27302 * 22 12 11 40 40 H 1.08999 * 109.46187 * 178.24310 * 22 12 11 41 41 H 1.09007 * 109.50201 * 299.23219 * 23 22 12 42 42 H 1.09005 * 109.50280 * 179.12383 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2450 -3.6639 -0.0018 11 6 1.4752 -4.9851 0.0597 12 7 0.6554 -5.0192 1.2775 13 6 0.0093 -6.3283 1.4407 14 6 -0.7496 -6.4021 2.7826 15 6 -2.1602 -5.9538 2.4652 16 6 -3.1753 -5.5237 3.3036 17 6 -4.4004 -5.1586 2.7810 18 6 -4.6153 -5.2228 1.4167 19 6 -3.6044 -5.6513 0.5792 20 6 -2.3750 -6.0178 1.1013 21 6 -1.1238 -6.5142 0.4090 22 6 -0.3384 -3.9381 1.2790 23 6 0.3773 -2.5855 1.2538 24 1 -0.4850 0.8400 0.0004 25 1 0.6212 -2.5572 -0.8883 26 1 2.9005 -3.5839 0.8654 27 1 2.8414 -3.6323 -0.9136 28 1 2.1806 -5.8160 0.0734 29 1 0.8303 -5.0707 -0.8148 30 1 0.7392 -7.1341 1.3636 31 1 -0.2948 -5.7317 3.5118 32 1 -0.7538 -7.4244 3.1608 33 1 -3.0080 -5.4730 4.3692 34 1 -5.1884 -4.8195 3.4370 35 1 -5.5727 -4.9373 1.0063 36 1 -3.7731 -5.7016 -0.4864 37 1 -1.2288 -7.5670 0.1471 38 1 -0.9239 -5.9199 -0.4826 39 1 -0.9749 -4.0286 0.3987 40 1 -0.9503 -4.0085 2.1783 41 1 1.0033 -2.4885 2.1409 42 1 -0.3608 -1.7835 1.2392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255028618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:08 Heat of formation + Delta-G solvation = 20.517608 kcal Electronic energy + Delta-G solvation = -21359.920056 eV Core-core repulsion = 18496.792050 eV Total energy + Delta-G solvation = -2863.128007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53346 -37.89009 -35.32910 -32.88529 -31.29728 -30.72472 -29.72965 -27.98451 -27.14993 -25.27222 -22.64100 -22.01978 -21.48800 -20.74066 -19.85056 -18.34355 -16.42976 -16.24158 -15.77184 -15.09378 -14.87058 -14.51016 -13.94016 -13.88471 -13.43521 -13.14011 -12.97196 -12.76141 -12.35028 -12.23824 -11.99284 -11.54231 -11.39665 -11.17931 -11.07908 -11.02501 -10.88185 -10.67608 -10.59466 -10.37054 -10.13685 -9.89061 -9.37527 -8.90173 -8.71878 -8.62759 -8.31560 -8.19196 -7.65401 -5.92062 -3.97474 1.51794 1.54682 3.33976 3.40681 3.44288 3.90197 4.37569 4.49047 4.63096 4.70847 5.11434 5.15476 5.24600 5.33807 5.37849 5.43097 5.64297 5.72874 5.75899 5.82084 5.86439 5.98152 5.99621 6.02946 6.21094 6.27176 6.31372 6.37783 6.44960 6.59130 6.64535 6.69705 6.73464 6.82297 6.92417 7.13608 7.15925 7.22959 7.52356 7.68278 7.77670 7.89486 8.10922 8.23083 8.53916 9.06252 9.66573 11.13902 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021925 B = 0.005436 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.788128 B = 5149.633126 C = 5878.155295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.522 5.522 13 C 0.084 3.916 14 C -0.076 4.076 15 C -0.089 4.089 16 C -0.110 4.110 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.086 4.086 21 C -0.118 4.118 22 C 0.058 3.942 23 C -0.104 4.104 24 H 0.258 0.742 25 H 0.019 0.981 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.025 0.975 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 -13.972 3.872 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.246 5.246 13 C -0.026 4.026 14 C -0.114 4.114 15 C -0.089 4.089 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.141 4.141 19 C -0.126 4.126 20 C -0.086 4.086 21 C -0.156 4.156 22 C -0.069 4.069 23 C -0.142 4.142 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.993 -13.755 4.275 15.601 hybrid contribution -0.275 0.907 -0.765 1.218 sum -6.268 -12.848 3.510 14.720 Atomic orbital electron populations 1.69889 1.05842 1.26203 1.51096 1.24970 0.94819 0.98955 0.95285 0.86651 0.79937 0.83769 0.77967 1.20843 1.21332 1.19966 1.21210 0.92835 0.90715 1.50041 0.92813 1.18673 0.92665 0.91702 0.93965 1.21677 0.98706 0.93803 1.00217 1.22113 0.95588 0.99239 0.89902 1.62208 1.23178 1.01416 1.37788 1.22412 0.93690 0.93286 0.93216 1.21137 0.90612 1.01225 0.98403 1.20606 0.95710 0.98611 0.94009 1.20582 0.92759 1.00129 0.99315 1.20968 0.97016 1.00783 0.95329 1.20964 0.98869 1.00564 0.93663 1.20600 0.92502 0.99929 0.99579 1.20519 0.94636 0.98716 0.94775 1.21792 0.92960 1.00927 0.99962 1.22360 0.93084 0.92388 0.99100 1.21667 1.00066 0.93343 0.99162 0.93172 0.96330 0.92506 0.93275 0.92467 0.95718 0.89144 0.89549 0.90256 0.86499 0.86238 0.86246 0.86663 0.90434 0.90442 0.95657 0.92249 0.94083 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 11.38 55.43 0.63 -25.25 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 10 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 11 C 0.06 1.06 5.22 -3.83 -0.02 1.04 16 12 N -0.52 -9.27 4.65 -224.99 -1.05 -10.32 16 13 C 0.08 1.19 3.30 -66.30 -0.22 0.97 16 14 C -0.08 -1.01 5.84 -26.85 -0.16 -1.17 16 15 C -0.09 -1.28 4.32 -104.20 -0.45 -1.73 16 16 C -0.11 -1.47 10.04 -39.53 -0.40 -1.87 16 17 C -0.12 -1.56 10.05 -39.62 -0.40 -1.96 16 18 C -0.12 -1.60 10.05 -39.63 -0.40 -1.99 16 19 C -0.11 -1.53 10.04 -39.54 -0.40 -1.92 16 20 C -0.09 -1.27 4.62 -104.21 -0.48 -1.75 16 21 C -0.12 -1.63 5.67 -26.84 -0.15 -1.79 16 22 C 0.06 1.17 4.01 -3.83 -0.02 1.16 16 23 C -0.10 -2.54 5.12 -26.65 -0.14 -2.67 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.02 0.45 6.82 -51.93 -0.35 0.09 16 30 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.09 1.22 7.98 -51.93 -0.41 0.81 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.20 5.95 -51.93 -0.31 0.89 16 39 H 0.03 0.54 6.31 -51.93 -0.33 0.22 16 40 H 0.06 1.19 5.65 -51.93 -0.29 0.89 16 41 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 2.47 6.18 -51.93 -0.32 2.15 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -29.31 318.68 -11.21 -40.52 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.63 Total: 1.62 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -3.95 Total: -27.98 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.41 Total: -35.57 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.31 -11.21 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255028618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.040 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds