Wall clock time and date at job start Mon Mar 30 2020 02:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46974 * 2 1 4 4 H 1.08995 * 109.47360 * 304.99793 * 3 2 1 5 5 C 1.50699 * 109.46750 * 185.00050 * 3 2 1 6 6 H 1.08003 * 119.99797 * 240.00650 * 5 3 2 7 7 C 1.37875 * 120.00057 * 60.00279 * 5 3 2 8 8 N 1.31509 * 120.00172 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99746 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47162 * 90.00081 * 9 7 5 11 11 H 1.48504 * 109.46944 * 210.00090 * 9 7 5 12 12 H 1.48499 * 109.47076 * 330.00211 * 9 7 5 13 13 N 1.46904 * 109.46607 * 65.00319 * 3 2 1 14 14 C 1.46829 * 110.99340 * 179.97438 * 13 3 2 15 15 C 1.54225 * 108.90094 * 178.75955 * 14 13 3 16 16 H 1.09002 * 113.08841 * 191.22639 * 15 14 13 17 17 C 1.55966 * 105.53845 * 65.91526 * 15 14 13 18 18 C 1.55961 * 98.97165 * 286.75352 * 17 15 14 19 19 H 1.08999 * 114.03193 * 197.96562 * 18 17 15 20 20 C 1.46824 * 110.99918 * 53.97724 * 13 3 2 21 21 C 1.50995 * 102.74194 * 320.86323 * 18 17 15 22 22 C 1.38287 * 129.65456 * 205.68412 * 21 18 17 23 23 C 1.38950 * 116.92324 * 180.02562 * 22 21 18 24 24 C 1.37970 * 121.62443 * 359.97438 * 23 22 21 25 25 C 1.38962 * 121.61872 * 0.28274 * 24 23 22 26 26 C 1.38273 * 116.92315 * 359.46947 * 25 24 23 27 27 H 1.08993 * 109.47136 * 299.99771 * 1 2 3 28 28 H 1.09010 * 109.46926 * 59.99769 * 1 2 3 29 29 H 1.08993 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46951 * 240.00250 * 2 1 3 31 31 H 1.08992 * 109.47038 * 120.00292 * 2 1 3 32 32 H 0.97004 * 120.00171 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.56606 * 58.93121 * 14 13 3 34 34 H 1.09000 * 109.65794 * 298.63751 * 14 13 3 35 35 H 1.09003 * 111.49258 * 44.19180 * 17 15 14 36 36 H 1.09004 * 111.49742 * 169.30897 * 17 15 14 37 37 H 1.09003 * 109.56536 * 301.05949 * 20 13 3 38 38 H 1.08989 * 109.57189 * 61.29673 * 20 13 3 39 39 H 1.08002 * 121.53811 * 0.02562 * 22 21 18 40 40 H 1.08001 * 119.18796 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.18651 * 179.97438 * 24 23 22 42 42 H 1.08001 * 121.53197 * 179.71378 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3376 -2.1734 9 14 6.0050 0.8813 -1.3818 10 1 6.5549 -0.3502 -0.7602 11 1 6.3830 0.9225 -2.8173 12 1 6.5569 2.0738 -0.6901 13 7 1.6513 2.0992 1.2553 14 6 2.1255 3.4884 1.2911 15 6 1.6657 4.1394 2.6114 16 1 1.8094 5.2197 2.6280 17 6 2.4289 3.3797 3.7397 18 6 1.6397 2.0350 3.7043 19 1 1.7625 1.4246 4.5990 20 6 2.0991 1.3207 2.4169 21 6 0.2166 2.4896 3.4850 22 6 -0.9709 1.8665 3.8225 23 6 -2.1459 2.5300 3.4912 24 6 -2.1307 3.7543 2.8553 25 6 -0.9396 4.3812 2.5099 26 6 0.2319 3.7265 2.8429 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8292 -0.0602 -2.9504 33 1 1.7077 4.0384 0.4479 34 1 3.2139 3.5059 1.2351 35 1 3.4783 3.2338 3.4837 36 1 2.3214 3.8807 4.7018 37 1 1.6624 0.3228 2.3778 38 1 3.1863 1.2440 2.4079 39 1 -0.9843 0.9083 4.3207 40 1 -3.0945 2.0761 3.7375 41 1 -3.0678 4.2350 2.6158 42 1 -0.9294 5.3374 2.0080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:31 Heat of formation + Delta-G solvation = 21.638028 kcal Electronic energy + Delta-G solvation = -21981.095175 eV Core-core repulsion = 19118.015754 eV Total energy + Delta-G solvation = -2863.079422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97423 -38.68304 -36.58569 -34.02970 -33.08009 -32.38189 -30.25736 -29.57428 -28.43483 -25.50100 -24.73827 -23.71756 -23.40393 -21.43268 -20.90901 -20.22172 -18.35250 -17.46441 -16.53129 -16.38603 -16.19732 -15.62710 -15.40016 -15.06706 -14.68326 -14.58399 -14.23583 -13.85626 -13.53252 -13.33290 -13.21381 -13.13409 -13.05838 -12.98822 -12.71982 -12.49823 -12.27363 -12.07341 -11.72203 -11.63587 -11.52172 -11.48688 -11.20928 -10.96392 -10.91213 -10.41982 -9.47119 -9.09815 -8.81078 -8.00232 -6.25632 0.70519 0.72991 1.35737 1.37783 1.46087 2.39244 3.04283 3.15673 3.36039 3.67047 3.84233 4.04239 4.11527 4.31023 4.34307 4.41815 4.47802 4.54846 4.65576 4.71824 4.74804 4.79593 4.86396 4.89006 4.94011 5.02884 5.06775 5.10170 5.17785 5.23118 5.28707 5.31427 5.39887 5.49984 5.51972 5.62340 5.73785 5.79898 5.82243 6.03082 6.06709 6.23175 6.35405 6.42319 6.76870 6.97216 7.45516 8.92077 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.006508 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.272975 B = 4301.593007 C = 4761.538817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 C 0.225 3.775 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.526 5.526 14 C 0.077 3.923 15 C -0.056 4.056 16 H 0.106 0.894 17 C -0.111 4.111 18 C -0.058 4.058 19 H 0.108 0.892 20 C 0.075 3.925 21 C -0.073 4.073 22 C -0.117 4.117 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.120 4.120 26 C -0.077 4.077 27 H 0.053 0.947 28 H 0.027 0.973 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.261 0.739 33 H 0.047 0.953 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 5.285 12.625 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C 0.118 3.882 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.068 0.932 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.250 5.250 14 C -0.052 4.052 15 C -0.075 4.075 16 H 0.124 0.876 17 C -0.148 4.148 18 C -0.076 4.076 19 H 0.126 0.874 20 C -0.053 4.053 21 C -0.073 4.073 22 C -0.135 4.135 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.137 4.137 26 C -0.077 4.077 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.782 5.207 12.445 15.574 hybrid contribution 2.053 -0.266 -0.991 2.295 sum -5.730 4.942 11.454 13.727 Atomic orbital electron populations 1.21532 0.96538 0.99539 1.00356 1.21480 0.94218 0.98336 1.00415 1.18946 0.91617 0.91177 0.86469 0.98596 1.21966 0.94082 1.37498 1.05188 0.93217 1.25610 1.01700 0.94980 0.95568 1.70007 1.36242 1.39062 1.09816 0.85756 0.81568 0.78381 0.77113 1.20251 1.21026 1.19736 1.61924 1.59259 1.01281 1.02499 1.22003 0.96749 0.90117 0.96330 1.21482 0.91738 0.99696 0.94580 0.87599 1.23149 0.98234 0.94839 0.98595 1.21506 0.91646 0.97104 0.97357 0.87391 1.22086 0.96631 0.96747 0.89852 1.20532 0.94464 0.94588 0.97760 1.21079 0.91424 0.99809 1.01155 1.21255 0.98370 0.95601 0.99882 1.21252 0.98080 0.96091 0.99837 1.21078 0.91647 1.00424 1.00596 1.20551 0.94421 0.95573 0.97185 0.92784 0.95338 0.93628 0.92073 0.94645 0.92999 0.93463 0.95786 0.91454 0.89284 0.91902 0.96200 0.84680 0.84840 0.84937 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.80 71.98 0.71 -4.40 16 2 C -0.11 -5.13 4.86 30.60 0.15 -4.98 16 3 C 0.23 11.35 1.82 44.17 0.08 11.44 16 4 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 5 C -0.55 -29.62 7.09 25.60 0.18 -29.44 16 6 H 0.05 2.69 5.96 -2.91 -0.02 2.67 16 7 C 0.02 1.16 5.29 84.66 0.45 1.61 16 8 N -0.91 -52.48 11.29 21.45 0.24 -52.24 16 9 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.53 -22.06 3.04 -870.74 -2.64 -24.70 16 14 C 0.08 3.00 4.76 86.73 0.41 3.41 16 15 C -0.06 -1.71 4.29 -10.00 -0.04 -1.76 16 16 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 17 C -0.11 -3.07 6.25 32.65 0.20 -2.87 16 18 C -0.06 -1.72 4.29 -10.00 -0.04 -1.76 16 19 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 20 C 0.08 2.85 4.33 86.74 0.38 3.22 16 21 C -0.07 -2.22 4.87 -19.49 -0.09 -2.31 16 22 C -0.12 -3.17 10.27 22.45 0.23 -2.94 16 23 C -0.13 -3.32 9.96 22.38 0.22 -3.10 16 24 C -0.13 -3.40 9.96 22.38 0.22 -3.18 16 25 C -0.12 -3.34 10.27 22.45 0.23 -3.11 16 26 C -0.08 -2.37 4.87 -19.49 -0.09 -2.46 16 27 H 0.05 2.19 7.75 -2.39 -0.02 2.17 16 28 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 3.35 5.95 -2.39 -0.01 3.33 16 31 H 0.03 1.66 6.01 -2.39 -0.01 1.65 16 32 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.02 1.03 6.33 -2.39 -0.02 1.01 16 35 H 0.07 1.97 7.67 -2.39 -0.02 1.95 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.46 6.04 -2.39 -0.01 2.45 16 38 H 0.02 0.83 6.71 -2.39 -0.02 0.82 16 39 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 40 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -60.30 318.14 3.80 -56.50 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.99 Total: 17.41 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 3.19 Total: -42.62 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -2.40 Total: -76.94 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -60.30 3.80 -56.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.138 kcal (2) G-P(sol) polarization free energy of solvation -60.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds