Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46548 * 2 1 4 4 H 1.08995 * 109.47624 * 55.00430 * 3 2 1 5 5 C 1.50706 * 109.46980 * 175.00318 * 3 2 1 6 6 H 1.07996 * 120.00097 * 120.00200 * 5 3 2 7 7 C 1.37881 * 119.99598 * 299.99932 * 5 3 2 8 8 N 1.31517 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99846 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47004 * 119.99935 * 9 7 5 12 12 H 1.48504 * 109.47083 * 239.99752 * 9 7 5 13 13 N 1.46904 * 109.47352 * 294.99915 * 3 2 1 14 14 C 1.47628 * 111.77167 * 307.33593 * 13 3 2 15 15 C 1.54222 * 109.53713 * 179.60100 * 14 13 3 16 16 H 1.08995 * 113.78705 * 189.35430 * 15 14 13 17 17 C 1.55967 * 105.53809 * 64.53399 * 15 14 13 18 18 C 1.55970 * 98.97188 * 286.76322 * 17 15 14 19 19 H 1.08994 * 113.28939 * 198.38147 * 18 17 15 20 20 C 1.46834 * 110.99942 * 180.02562 * 13 3 2 21 21 C 1.50998 * 102.74289 * 320.87216 * 18 17 15 22 22 C 1.38272 * 129.64892 * 205.67532 * 21 18 17 23 23 C 1.38964 * 116.92226 * 179.76993 * 22 21 18 24 24 C 1.37960 * 121.62305 * 0.46915 * 23 22 21 25 25 C 1.38959 * 121.62226 * 359.48328 * 24 23 22 26 26 C 1.38277 * 116.92152 * 0.27002 * 25 24 23 27 27 H 1.08992 * 109.47056 * 299.99852 * 1 2 3 28 28 H 1.09003 * 109.47291 * 60.00531 * 1 2 3 29 29 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46972 * 240.00617 * 2 1 3 31 31 H 1.08991 * 109.47036 * 119.99753 * 2 1 3 32 32 H 0.97003 * 119.99954 * 180.02562 * 8 7 5 33 33 H 1.08994 * 110.36113 * 58.88716 * 14 13 3 34 34 H 1.08999 * 108.13625 * 298.94351 * 14 13 3 35 35 H 1.09006 * 111.49276 * 44.20344 * 17 15 14 36 36 H 1.09001 * 111.49845 * 169.26411 * 17 15 14 37 37 H 1.08994 * 109.56697 * 61.41240 * 20 13 3 38 38 H 1.08999 * 109.65846 * 301.11986 * 20 13 3 39 39 H 1.08006 * 121.54132 * 359.95577 * 22 21 18 40 40 H 1.08003 * 119.18785 * 180.22275 * 23 22 21 41 41 H 1.08002 * 119.19271 * 179.76710 * 24 23 22 42 42 H 1.07993 * 121.54434 * 180.24562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8802 1.3811 10 1 6.5987 1.5455 0.1936 11 1 6.3999 1.6159 2.6091 12 1 6.4962 -0.5188 1.4626 13 7 1.6512 2.0993 -1.2552 14 6 2.0662 1.3148 -2.4350 15 6 1.6251 2.0440 -3.7204 16 1 1.7515 1.4523 -4.6269 17 6 2.4288 3.3805 -3.7393 18 6 1.6650 4.1397 -2.6110 19 1 1.8231 5.2178 -2.6338 20 6 2.1253 3.4885 -1.2909 21 6 0.2287 3.7436 -2.8565 22 6 -0.9382 4.4110 -2.5327 23 6 -2.1332 3.7993 -2.8917 24 6 -2.1566 2.5779 -3.5328 25 6 -0.9861 1.9044 -3.8603 26 6 0.2052 2.5122 -3.5089 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0612 2.9498 33 1 1.6181 0.3216 -2.4067 34 1 3.1525 1.2276 -2.4195 35 1 3.4746 3.2214 -3.4763 36 1 2.3350 3.8895 -4.6986 37 1 3.2138 3.5043 -1.2358 38 1 1.7091 4.0398 -0.4478 39 1 -0.9217 5.3651 -2.0268 40 1 -3.0668 4.2903 -2.6597 41 1 -3.1080 2.1364 -3.7905 42 1 -1.0058 0.9502 -4.3656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = 33.291441 kcal Electronic energy + Delta-G solvation = -21951.058877 eV Core-core repulsion = 19088.484786 eV Total energy + Delta-G solvation = -2862.574092 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62695 -37.21538 -35.02542 -32.06677 -31.78659 -30.72486 -28.97894 -28.37723 -26.52708 -23.70401 -23.36241 -22.30445 -22.02678 -20.09365 -19.43179 -18.62252 -16.47121 -15.86312 -15.29799 -14.94584 -14.68370 -14.21732 -13.74247 -13.62156 -13.16093 -12.86611 -12.83839 -12.61453 -12.03607 -11.90417 -11.83225 -11.63901 -11.36162 -11.18270 -11.11864 -10.85767 -10.66491 -10.45259 -10.33138 -10.21803 -9.99760 -9.71681 -9.60923 -9.30335 -9.05286 -8.35526 -8.35184 -7.93046 -6.97154 -5.96669 -4.11711 1.82173 1.85682 3.24654 3.33627 3.36077 4.18328 4.39040 4.80658 4.85040 5.18637 5.25594 5.31768 5.32795 5.34018 5.37397 5.69007 5.77706 5.85762 5.89566 6.02202 6.15339 6.18749 6.28449 6.32948 6.37170 6.49242 6.52181 6.58200 6.67992 6.68931 6.74059 6.76535 6.88279 6.90822 7.12479 7.18572 7.24225 7.36161 7.44676 7.65669 7.78330 8.01343 8.19654 8.38981 8.50811 8.99652 9.55938 11.00685 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.006455 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.538952 B = 4336.354600 C = 4791.431954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.221 3.779 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.540 5.540 14 C 0.076 3.924 15 C -0.064 4.064 16 H 0.085 0.915 17 C -0.119 4.119 18 C -0.064 4.064 19 H 0.084 0.916 20 C 0.080 3.920 21 C -0.057 4.057 22 C -0.108 4.108 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.109 4.109 26 C -0.057 4.057 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.023 0.977 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 4.949 -10.823 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C 0.115 3.885 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.264 5.264 14 C -0.052 4.052 15 C -0.083 4.083 16 H 0.104 0.896 17 C -0.157 4.157 18 C -0.083 4.083 19 H 0.102 0.898 20 C -0.048 4.048 21 C -0.057 4.057 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.127 4.127 26 C -0.057 4.057 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.020 4.863 -10.630 13.635 hybrid contribution 1.869 -0.164 0.389 1.916 sum -5.151 4.699 -10.240 12.389 Atomic orbital electron populations 1.21705 0.98784 0.98261 1.00733 1.21647 0.92294 0.99297 1.01930 1.19189 0.92771 0.90903 0.85636 0.94423 1.21787 0.93006 1.37881 1.05373 0.92655 1.24911 0.97694 0.95081 0.95746 1.69889 1.34636 1.38380 1.09431 0.86650 0.86372 0.77687 0.77936 1.20002 1.21054 1.21047 1.61663 1.60843 1.00774 1.03162 1.22151 0.98174 0.96471 0.88421 1.21510 0.91366 0.96858 0.98547 0.89630 1.23213 0.99048 0.95517 0.97875 1.21498 0.91286 0.98773 0.96710 0.89759 1.21972 0.98076 0.90494 0.94300 1.20409 0.94234 0.94896 0.96129 1.20777 0.91549 0.99682 1.00630 1.20906 0.97362 0.96054 1.00521 1.20903 0.97553 0.95665 1.00658 1.20769 0.91512 0.99161 1.01236 1.20429 0.94170 0.94311 0.96790 0.94290 0.93267 0.95770 0.94877 0.89034 0.92983 0.90989 0.94256 0.90679 0.91910 0.93765 0.91844 0.86267 0.87295 0.87298 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.80 37.16 0.36 -2.52 16 2 C -0.11 -2.68 4.85 -26.73 -0.13 -2.81 16 3 C 0.22 5.38 1.83 -68.86 -0.13 5.26 16 4 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 5 C -0.54 -14.20 7.13 -34.44 -0.25 -14.45 16 6 H 0.06 1.46 6.04 -52.49 -0.32 1.14 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.14 16 9 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.54 -11.14 3.06 -225.89 -0.69 -11.84 16 14 C 0.08 1.44 4.38 -2.78 -0.01 1.43 16 15 C -0.06 -1.01 4.29 -89.40 -0.38 -1.39 16 16 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.12 -1.76 6.25 -23.56 -0.15 -1.91 16 18 C -0.06 -1.01 4.23 -89.40 -0.38 -1.39 16 19 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 20 C 0.08 1.54 4.81 -3.22 -0.02 1.52 16 21 C -0.06 -0.91 4.92 -104.04 -0.51 -1.42 16 22 C -0.11 -1.62 10.27 -39.30 -0.40 -2.02 16 23 C -0.13 -1.82 9.96 -39.41 -0.39 -2.21 16 24 C -0.13 -1.81 9.96 -39.42 -0.39 -2.20 16 25 C -0.11 -1.62 10.27 -39.30 -0.40 -2.02 16 26 C -0.06 -0.91 4.91 -104.04 -0.51 -1.43 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 1.02 7.75 -51.93 -0.40 0.61 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.76 6.06 -51.93 -0.31 0.45 16 31 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 33 H 0.07 1.41 6.18 -51.93 -0.32 1.09 16 34 H 0.04 0.81 6.76 -51.93 -0.35 0.46 16 35 H 0.07 1.14 7.65 -51.93 -0.40 0.75 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.91 6.31 -51.93 -0.33 0.59 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 318.59 15.07 4.80 4.80 Total: -1.00 -27.64 318.59 -10.59 -38.24 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.53 Total: 2.84 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.78 Total: -25.83 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.06 Total: -35.97 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.64 -10.59 -38.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.528 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds