Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47230 * 2 1 4 4 H 1.09001 * 109.47551 * 303.39429 * 3 2 1 5 5 C 1.50697 * 109.47152 * 183.38758 * 3 2 1 6 6 H 1.08004 * 120.00428 * 239.99731 * 5 3 2 7 7 C 1.37881 * 119.99714 * 60.00211 * 5 3 2 8 8 N 1.31513 * 120.00055 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00020 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46997 * 269.99793 * 9 7 5 11 11 H 1.48498 * 109.47143 * 29.99853 * 9 7 5 12 12 H 1.48507 * 109.47112 * 149.99972 * 9 7 5 13 13 N 1.46905 * 109.47060 * 63.39176 * 3 2 1 14 14 C 1.46850 * 110.99940 * 191.20200 * 13 3 2 15 15 C 1.53095 * 109.48734 * 173.83829 * 14 13 3 16 16 C 1.52845 * 109.27345 * 58.65966 * 15 14 13 17 17 C 1.53854 * 109.73130 * 182.30541 * 16 15 14 18 18 C 1.54872 * 104.07834 * 242.39949 * 17 16 15 19 19 H 1.08997 * 110.90842 * 262.65295 * 18 17 16 20 20 F 1.39903 * 110.90297 * 139.05625 * 18 17 16 21 21 C 1.55011 * 102.10395 * 20.85701 * 18 17 16 22 22 O 1.43472 * 109.89521 * 64.19339 * 16 15 14 23 23 C 1.52843 * 109.93161 * 303.09916 * 16 15 14 24 24 C 1.46846 * 111.00055 * 66.88729 * 13 3 2 25 25 H 1.08997 * 109.47319 * 184.77855 * 1 2 3 26 26 H 1.09007 * 109.46997 * 304.78481 * 1 2 3 27 27 H 1.09000 * 109.47353 * 64.77997 * 1 2 3 28 28 H 1.08996 * 109.47033 * 240.00068 * 2 1 3 29 29 H 1.09002 * 109.47179 * 119.99874 * 2 1 3 30 30 H 0.97002 * 120.00483 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.46442 * 293.84400 * 14 13 3 32 32 H 1.08998 * 109.46672 * 53.83038 * 14 13 3 33 33 H 1.09002 * 109.50201 * 298.72038 * 15 14 13 34 34 H 1.08995 * 109.53643 * 178.61624 * 15 14 13 35 35 H 1.08998 * 110.50778 * 1.05122 * 17 16 15 36 36 H 1.09002 * 110.50652 * 123.61548 * 17 16 15 37 37 H 1.09004 * 110.61278 * 81.64327 * 21 18 17 38 38 H 1.09000 * 110.61145 * 204.46406 * 21 18 17 39 39 H 1.09003 * 109.50416 * 296.95553 * 23 16 15 40 40 H 1.09003 * 109.53824 * 176.85778 * 23 16 15 41 41 H 1.08999 * 109.46608 * 306.16624 * 24 13 3 42 42 H 1.08997 * 109.46497 * 66.15876 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6279 1.9736 -0.8580 5 6 3.5446 1.4433 -0.0840 6 1 4.1293 1.8952 0.7037 7 6 4.1750 0.8671 -1.1665 8 7 5.4880 0.8682 -1.2401 9 14 3.1639 0.0849 -2.5285 10 1 2.9349 -1.3483 -2.2144 11 1 1.8575 0.7825 -2.6383 12 1 3.8955 0.1987 -3.8159 13 7 1.6184 2.1109 1.2384 14 6 1.8548 3.5582 1.1619 15 6 1.2654 4.2381 2.4005 16 6 1.9134 3.6515 3.6544 17 6 1.2873 4.2865 4.9081 18 6 2.4702 5.0159 5.5917 19 1 2.8976 4.4042 6.3861 20 9 2.0701 6.2627 6.0846 21 6 3.4717 5.1798 4.4201 22 8 3.3152 3.9567 3.6679 23 6 1.7100 2.1370 3.6861 24 6 2.2853 1.5230 2.4071 25 1 -0.3634 -1.0240 0.0856 26 1 -0.3633 0.5863 0.8441 27 1 -0.3634 0.4379 -0.9297 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9315 0.4632 -2.0018 31 1 2.9271 3.7493 1.1181 32 1 1.3779 3.9574 0.2667 33 1 0.1895 4.0665 2.4325 34 1 1.4620 5.3093 2.3565 35 1 0.5102 4.9979 4.6284 36 1 0.8806 3.5164 5.5637 37 1 3.2087 6.0428 3.8082 38 1 4.4904 5.2740 4.7963 39 1 0.6449 1.9141 3.7496 40 1 2.2217 1.7186 4.5528 41 1 2.1207 0.4455 2.4154 42 1 3.3548 1.7268 2.3556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = -112.129566 kcal Electronic energy + Delta-G solvation = -22666.773236 eV Core-core repulsion = 19367.123992 eV Total energy + Delta-G solvation = -3299.649245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.69450 -41.30842 -39.01741 -35.68952 -34.04328 -32.98068 -31.88687 -31.44397 -29.08085 -27.19788 -24.69405 -24.17338 -23.50806 -22.30135 -21.30647 -20.47847 -18.71267 -17.84602 -17.56692 -16.98647 -16.27807 -16.17489 -16.01748 -15.79958 -15.46128 -15.20769 -14.82869 -14.58035 -14.31007 -14.05147 -13.75921 -13.60596 -13.40273 -13.10251 -13.00982 -12.72773 -12.58913 -12.40499 -12.22190 -12.05827 -11.94958 -11.81081 -11.53660 -11.39183 -11.34904 -11.10908 -10.96335 -10.64982 -10.49916 -8.87622 -8.30464 -6.34351 1.28696 1.33924 1.44634 2.30466 2.75862 3.04523 3.26867 3.34745 3.46176 3.61312 3.73152 3.92849 4.03201 4.26482 4.32555 4.40762 4.46868 4.52060 4.61140 4.64652 4.66620 4.69002 4.73989 4.85049 4.92458 4.94650 5.01866 5.06668 5.07801 5.19572 5.25023 5.28467 5.32731 5.41400 5.50123 5.59441 5.65844 6.01406 6.19453 6.41796 6.55656 6.75853 7.33485 8.86376 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.005471 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.169218 B = 5116.725892 C = 5619.331396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.183 3.817 4 H 0.027 0.973 5 C -0.535 4.535 6 H 0.032 0.968 7 C 0.012 3.988 8 N -0.951 5.951 9 Si 0.950 3.050 10 H -0.266 1.266 11 H -0.245 1.245 12 H -0.302 1.302 13 N -0.510 5.510 14 C 0.065 3.935 15 C -0.116 4.116 16 C 0.101 3.899 17 C -0.161 4.161 18 C 0.062 3.938 19 H 0.121 0.879 20 F -0.211 7.211 21 C 0.016 3.984 22 O -0.381 6.381 23 C -0.099 4.099 24 C 0.066 3.934 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.055 0.945 30 H 0.263 0.737 31 H 0.002 0.998 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.301 5.560 12.835 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.074 3.926 4 H 0.045 0.955 5 C -0.574 4.574 6 H 0.050 0.950 7 C -0.185 4.185 8 N -0.591 5.591 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.169 1.169 12 H -0.231 1.231 13 N -0.233 5.233 14 C -0.063 4.063 15 C -0.154 4.154 16 C 0.062 3.938 17 C -0.198 4.198 18 C 0.026 3.974 19 H 0.139 0.861 20 F -0.192 7.192 21 C -0.061 4.061 22 O -0.300 6.300 23 C -0.136 4.136 24 C -0.063 4.063 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -12.529 5.352 12.709 18.631 hybrid contribution 1.552 -0.020 -1.141 1.926 sum -10.977 5.331 11.568 16.815 Atomic orbital electron populations 1.21647 0.93985 1.01367 1.02117 1.21819 0.96986 0.97226 0.99715 1.19587 0.91148 0.92251 0.89575 0.95478 1.21925 0.92935 1.36496 1.06020 0.94968 1.25867 0.95619 0.96400 1.00598 1.70086 1.10089 1.47083 1.31867 0.85833 0.79394 0.79620 0.77438 1.19206 1.16908 1.23065 1.62380 1.55758 1.02511 1.02637 1.21811 0.97311 0.89064 0.98153 1.22006 1.01306 0.98970 0.93081 1.22049 0.80906 0.96106 0.94707 1.23547 0.98129 1.01860 0.96305 1.23239 0.95747 0.81137 0.97314 0.86128 1.92799 1.92072 1.44937 1.89405 1.24213 1.01425 0.88623 0.91837 1.89077 1.25060 1.41237 1.74648 1.21768 1.02835 0.92258 0.96753 1.21840 0.95364 0.98548 0.90508 0.92386 0.90763 0.93812 0.95023 0.92651 0.92791 0.97968 0.92028 0.88445 0.91158 0.88181 0.86839 0.91407 0.87192 0.87984 0.90291 0.91651 0.97746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.85 71.98 0.71 -3.64 16 2 C -0.12 -4.98 4.82 30.59 0.15 -4.83 16 3 C 0.18 8.52 1.31 44.17 0.06 8.58 16 4 H 0.03 1.32 7.02 -2.39 -0.02 1.30 16 5 C -0.53 -30.79 7.84 25.60 0.20 -30.59 16 6 H 0.03 2.12 6.10 -2.91 -0.02 2.10 16 7 C 0.01 0.74 5.45 84.66 0.46 1.20 16 8 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 9 Si 0.95 45.88 24.40 68.60 1.67 47.56 16 10 H -0.27 -12.22 6.84 99.48 0.68 -11.54 16 11 H -0.25 -10.96 6.53 99.48 0.65 -10.31 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 13 N -0.51 -20.17 3.89 -875.27 -3.40 -23.58 16 14 C 0.07 2.50 5.09 86.34 0.44 2.94 16 15 C -0.12 -3.23 4.82 30.57 0.15 -3.08 16 16 C 0.10 2.68 0.71 -10.61 -0.01 2.67 16 17 C -0.16 -2.95 6.09 31.52 0.19 -2.76 16 18 C 0.06 1.18 4.94 31.92 0.16 1.34 16 19 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 20 F -0.21 -4.51 17.22 44.97 0.77 -3.73 16 21 C 0.02 0.39 7.46 72.67 0.54 0.93 16 22 O -0.38 -12.37 9.92 -148.98 -1.48 -13.84 16 23 C -0.10 -2.70 4.88 30.57 0.15 -2.55 16 24 C 0.07 2.53 4.66 86.35 0.40 2.93 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 2.27 7.57 -2.38 -0.02 2.25 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.03 1.40 3.22 -2.39 -0.01 1.39 16 29 H 0.05 2.31 6.32 -2.39 -0.02 2.29 16 30 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 31 H 0.00 0.09 7.09 -2.38 -0.02 0.07 16 32 H 0.06 2.31 8.00 -2.39 -0.02 2.29 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 1.82 8.07 -2.39 -0.02 1.80 16 35 H 0.10 1.67 7.66 -2.39 -0.02 1.65 16 36 H 0.11 1.59 7.69 -2.39 -0.02 1.57 16 37 H 0.07 1.62 8.09 -2.38 -0.02 1.60 16 38 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 2.51 6.19 -2.39 -0.01 2.49 16 42 H 0.00 0.20 6.04 -2.39 -0.01 0.19 16 Total: -1.00 -69.60 312.13 2.38 -67.22 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.91 Total: 13.88 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.60 Total: -26.87 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -3.10 Total: -84.21 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.48 Total: -13.84 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.77 Total: -3.73 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.67 Total: 47.56 kcal Total: -69.60 2.38 -67.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.911 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds