Wall clock time and date at job start Mon Mar 30 2020 02:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47103 * 2 1 4 4 H 1.08995 * 109.47006 * 304.60276 * 3 2 1 5 5 C 1.50695 * 109.46879 * 184.60127 * 3 2 1 6 6 H 1.08009 * 120.00014 * 240.00290 * 5 3 2 7 7 C 1.37877 * 120.00351 * 60.27702 * 5 3 2 8 8 N 1.31511 * 119.99663 * 359.72533 * 7 5 3 9 9 Si 1.86794 * 120.00161 * 179.72254 * 7 5 3 10 10 H 1.48499 * 109.47074 * 60.00414 * 9 7 5 11 11 H 1.48506 * 109.46969 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47378 * 299.99972 * 9 7 5 13 13 N 1.46902 * 109.46946 * 64.60118 * 3 2 1 14 14 C 1.46844 * 110.99840 * 65.67399 * 13 3 2 15 15 C 1.53091 * 109.49515 * 186.12131 * 14 13 3 16 16 C 1.52884 * 109.26649 * 301.29138 * 15 14 13 17 17 C 1.54158 * 109.50473 * 177.28256 * 16 15 14 18 18 C 1.55356 * 102.19165 * 98.54903 * 17 16 15 19 19 H 1.09000 * 111.15631 * 151.89321 * 18 17 16 20 20 F 1.39901 * 111.12328 * 276.02733 * 18 17 16 21 21 C 1.54966 * 100.96472 * 33.95515 * 18 17 16 22 22 O 1.43021 * 110.06986 * 295.66088 * 16 15 14 23 23 C 1.52888 * 109.84316 * 57.00127 * 16 15 14 24 24 C 1.46842 * 111.00020 * 189.99291 * 13 3 2 25 25 H 1.09005 * 109.46833 * 59.99612 * 1 2 3 26 26 H 1.08994 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46914 * 299.99908 * 1 2 3 28 28 H 1.09000 * 109.47261 * 240.00160 * 2 1 3 29 29 H 1.08996 * 109.46921 * 120.00093 * 2 1 3 30 30 H 0.96998 * 120.00312 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47076 * 306.13390 * 14 13 3 32 32 H 1.09005 * 109.46698 * 66.12217 * 14 13 3 33 33 H 1.09002 * 109.50741 * 181.34904 * 15 14 13 34 34 H 1.09007 * 109.50317 * 61.22780 * 15 14 13 35 35 H 1.08994 * 110.86628 * 216.72426 * 17 16 15 36 36 H 1.09001 * 110.86000 * 340.38408 * 17 16 15 37 37 H 1.09003 * 110.30956 * 204.75219 * 21 18 17 38 38 H 1.09001 * 110.39200 * 82.62668 * 21 18 17 39 39 H 1.09002 * 109.50814 * 183.06277 * 23 16 15 40 40 H 1.08995 * 109.50821 * 62.92871 * 23 16 15 41 41 H 1.09003 * 109.46639 * 293.87971 * 24 13 3 42 42 H 1.08998 * 109.46263 * 53.86241 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6110 1.9796 -0.8458 5 6 3.5427 1.4440 -0.1140 6 1 4.1430 1.8903 0.6652 7 6 4.1511 0.8806 -1.2155 8 7 3.4203 0.3371 -2.1642 9 14 6.0134 0.8894 -1.3604 10 1 6.6028 0.1565 -0.2112 11 1 6.4144 0.2278 -2.6281 12 1 6.5036 2.2910 -1.3577 13 7 1.6432 2.1022 1.2512 14 6 2.3114 1.4872 2.4051 15 6 1.7610 2.0952 3.6979 16 6 1.9934 3.6062 3.6836 17 6 1.3806 4.2333 4.9516 18 6 2.6195 4.3776 5.8778 19 1 2.4955 5.2068 6.5743 20 9 2.8804 3.1847 6.5604 21 6 3.7296 4.6815 4.8400 22 8 3.3958 3.8872 3.6899 23 6 1.3411 4.2199 2.4445 24 6 1.9047 3.5459 1.1908 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8483 -0.0596 -2.9390 31 1 2.1271 0.4130 2.4017 32 1 3.3840 1.6720 2.3448 33 1 2.2738 1.6562 4.5537 34 1 0.6925 1.8920 3.7696 35 1 0.9452 5.2078 4.7312 36 1 0.6403 3.5674 5.3949 37 1 4.7039 4.3893 5.2317 38 1 3.7284 5.7404 4.5817 39 1 1.5561 5.2880 2.4112 40 1 0.2629 4.0662 2.4869 41 1 2.9797 3.7184 1.1376 42 1 1.4254 3.9651 0.3062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:24 Heat of formation + Delta-G solvation = -117.064111 kcal Electronic energy + Delta-G solvation = -22784.861922 eV Core-core repulsion = 19484.998700 eV Total energy + Delta-G solvation = -3299.863223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.63598 -41.10562 -38.83150 -35.66591 -33.74600 -32.86328 -31.79969 -31.51130 -28.71165 -27.00145 -24.86479 -24.17400 -23.32931 -22.33896 -21.05852 -20.35816 -18.40464 -17.95880 -17.20512 -16.95660 -16.17976 -16.13111 -15.91397 -15.56759 -15.45398 -15.15655 -14.69926 -14.65721 -14.04966 -14.00086 -13.50911 -13.22443 -13.19154 -13.05841 -12.85480 -12.81177 -12.48811 -12.38900 -12.19567 -12.06466 -11.90018 -11.83587 -11.61369 -11.52355 -11.34171 -11.04883 -10.77220 -10.45103 -10.29164 -8.88377 -8.02975 -6.25058 1.34002 1.34418 1.42603 2.38590 2.76462 3.13841 3.25993 3.48024 3.60399 3.71051 3.77913 4.01179 4.04553 4.25525 4.44231 4.52411 4.62461 4.67610 4.70712 4.72817 4.76502 4.77274 4.87568 4.91869 4.97607 5.02065 5.07939 5.16520 5.21872 5.29283 5.35092 5.41345 5.45829 5.54057 5.66162 5.80963 6.08672 6.20768 6.24168 6.42070 6.73005 6.96993 7.45005 8.91072 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.006233 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.945824 B = 4491.430094 C = 5192.123974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.549 4.549 6 H 0.042 0.958 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.278 1.278 12 H -0.278 1.278 13 N -0.523 5.523 14 C 0.073 3.927 15 C -0.109 4.109 16 C 0.104 3.896 17 C -0.160 4.160 18 C 0.053 3.947 19 H 0.145 0.855 20 F -0.220 7.220 21 C 0.017 3.983 22 O -0.395 6.395 23 C -0.105 4.105 24 C 0.066 3.934 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.054 0.946 32 H 0.006 0.994 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.006 0.994 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 9.874 15.589 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.589 4.589 6 H 0.060 0.940 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.768 3.232 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.203 1.203 13 N -0.247 5.247 14 C -0.055 4.055 15 C -0.147 4.147 16 C 0.065 3.935 17 C -0.197 4.197 18 C 0.017 3.983 19 H 0.162 0.838 20 F -0.201 7.201 21 C -0.060 4.060 22 O -0.315 6.315 23 C -0.142 4.142 24 C -0.063 4.063 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.024 0.976 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.868 9.616 15.322 19.018 hybrid contribution 2.287 -0.293 -0.672 2.401 sum -3.581 9.323 14.650 17.730 Atomic orbital electron populations 1.21553 0.95945 0.99821 1.00811 1.21434 0.94788 0.98101 1.00069 1.19035 0.91453 0.91656 0.86646 0.97822 1.21954 0.94409 1.37470 1.05019 0.94020 1.25559 1.01565 0.95048 0.95548 1.69979 1.36162 1.39017 1.09730 0.85876 0.81892 0.78090 0.77355 1.20327 1.20316 1.20323 1.62382 1.56470 1.02464 1.03406 1.21722 0.95269 0.97883 0.90653 1.21883 1.01923 0.94632 0.96263 1.22054 0.80784 0.94756 0.95909 1.23822 0.97866 1.04755 0.93284 1.23468 0.95562 0.84787 0.94447 0.83774 1.92803 1.95092 1.50671 1.81547 1.24247 0.98980 0.97525 0.85236 1.88563 1.24851 1.72452 1.45645 1.21876 1.00743 0.99283 0.92339 1.21791 0.97343 0.89220 0.97898 0.94755 0.93585 0.92195 0.92081 0.95360 0.92900 0.92738 0.97527 0.91929 0.89302 0.85749 0.87872 0.89442 0.88182 0.89947 0.88944 0.97552 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.80 71.98 0.71 -4.33 16 2 C -0.11 -5.21 5.15 30.60 0.16 -5.05 16 3 C 0.22 11.40 1.71 44.17 0.08 11.48 16 4 H 0.00 0.22 7.98 -2.39 -0.02 0.20 16 5 C -0.55 -31.46 7.23 25.60 0.19 -31.28 16 6 H 0.04 2.48 5.85 -2.91 -0.02 2.47 16 7 C 0.02 1.29 5.30 84.66 0.45 1.74 16 8 N -0.91 -53.44 11.30 21.45 0.24 -53.20 16 9 Si 0.94 45.82 29.54 68.60 2.03 47.85 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 N -0.52 -22.77 4.03 -875.32 -3.53 -26.29 16 14 C 0.07 3.08 4.67 86.34 0.40 3.48 16 15 C -0.11 -3.49 4.94 30.59 0.15 -3.34 16 16 C 0.10 2.88 0.79 -10.48 -0.01 2.87 16 17 C -0.16 -2.81 5.89 31.80 0.19 -2.62 16 18 C 0.05 0.93 4.92 32.08 0.16 1.08 16 19 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 20 F -0.22 -5.39 16.94 44.97 0.76 -4.63 16 21 C 0.02 0.36 7.60 72.65 0.55 0.91 16 22 O -0.39 -12.85 9.79 -148.98 -1.46 -14.31 16 23 C -0.10 -2.97 4.95 30.59 0.15 -2.82 16 24 C 0.07 2.65 5.07 86.34 0.44 3.09 16 25 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 2.28 7.74 -2.39 -0.02 2.26 16 28 H 0.06 3.39 5.97 -2.39 -0.01 3.38 16 29 H 0.03 1.38 6.23 -2.39 -0.01 1.37 16 30 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.05 2.38 6.11 -2.39 -0.01 2.36 16 32 H 0.01 0.32 6.10 -2.38 -0.01 0.30 16 33 H 0.06 2.00 7.83 -2.39 -0.02 1.99 16 34 H 0.09 2.53 8.12 -2.38 -0.02 2.51 16 35 H 0.12 1.46 7.83 -2.39 -0.02 1.44 16 36 H 0.10 1.68 7.79 -2.39 -0.02 1.66 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.01 0.29 7.01 -2.39 -0.02 0.27 16 42 H 0.05 2.17 8.01 -2.39 -0.02 2.15 16 Total: -1.00 -67.40 318.82 2.64 -64.76 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.99 Total: 10.61 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 3.60 Total: -24.79 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -3.29 Total: -79.49 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -1.46 Total: -14.31 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.76 Total: -4.63 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -67.40 2.64 -64.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.305 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds