Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 H 1.08999 * 109.47616 * 178.57080 * 3 2 1 5 5 C 1.50703 * 109.47393 * 298.57809 * 3 2 1 6 6 H 1.07992 * 120.00270 * 119.99933 * 5 3 2 7 7 C 1.37881 * 119.99532 * 299.99486 * 5 3 2 8 8 N 1.31514 * 119.99874 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47209 * 60.00440 * 9 7 5 11 11 H 1.48504 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47477 * 300.00239 * 9 7 5 13 13 N 1.46909 * 109.46949 * 58.57238 * 3 2 1 14 14 C 1.46833 * 110.99649 * 56.45228 * 13 3 2 15 15 C 1.50175 * 110.24818 * 174.60605 * 14 13 3 16 16 C 1.31474 * 123.05793 * 342.89776 * 15 14 13 17 17 C 1.47810 * 118.65729 * 180.36062 * 16 15 14 18 18 C 1.39530 * 120.14181 * 244.72749 * 17 16 15 19 19 C 1.37976 * 119.85840 * 179.76885 * 18 17 16 20 20 C 1.38346 * 120.13990 * 0.48818 * 19 18 17 21 21 C 1.38347 * 120.28561 * 359.76235 * 20 19 18 22 22 C 1.37977 * 120.14072 * 0.02562 * 21 20 19 23 23 C 1.50333 * 122.67934 * 0.34452 * 16 15 14 24 24 C 1.47215 * 110.99707 * 179.45533 * 13 3 2 25 25 H 1.09001 * 109.47063 * 55.51084 * 1 2 3 26 26 H 1.09005 * 109.46924 * 295.51175 * 1 2 3 27 27 H 1.08998 * 109.46924 * 175.51316 * 1 2 3 28 28 H 1.08997 * 109.47281 * 119.99975 * 2 1 3 29 29 H 1.09002 * 109.46908 * 240.00432 * 2 1 3 30 30 H 0.97008 * 119.99358 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.34517 * 294.84561 * 14 13 3 32 32 H 1.09001 * 109.33992 * 54.52482 * 14 13 3 33 33 H 1.08000 * 118.46657 * 162.92605 * 15 14 13 34 34 H 1.08000 * 120.07260 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.93205 * 180.23136 * 19 18 17 36 36 H 1.08000 * 119.85971 * 179.74678 * 20 19 18 37 37 H 1.07997 * 119.92900 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.06934 * 179.97438 * 22 21 20 39 39 H 1.08994 * 109.43615 * 103.56394 * 23 16 15 40 40 H 1.09008 * 109.42939 * 223.46519 * 23 16 15 41 41 H 1.08999 * 109.63073 * 286.99202 * 24 13 3 42 42 H 1.08999 * 109.63283 * 47.57340 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4427 0.0256 5 6 1.5667 2.1427 -1.2477 6 1 0.9438 3.0215 -1.1705 7 6 1.9291 1.6614 -2.4879 8 7 2.6873 0.5909 -2.5819 9 14 1.3419 2.5288 -4.0345 10 1 1.8363 3.9291 -4.0347 11 1 1.8658 1.8193 -5.2292 12 1 -0.1426 2.5281 -4.0692 13 7 1.5223 2.1449 1.1819 14 6 1.8938 1.4419 2.4163 15 6 1.4713 2.2401 3.6162 16 6 1.1627 3.5167 3.5559 17 6 0.7669 4.2098 4.8000 18 6 -0.5261 4.7153 4.9394 19 6 -0.8908 5.3571 6.1052 20 6 0.0255 5.5087 7.1306 21 6 1.3106 5.0143 6.9966 22 6 1.6865 4.3667 5.8376 23 6 1.1963 4.3002 2.2734 24 6 2.0041 3.5354 1.2222 25 1 -0.3633 0.5819 -0.8470 26 1 -0.3633 0.4426 0.9275 27 1 -0.3633 -1.0245 -0.0804 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.9420 0.2521 -3.4545 31 1 1.4035 0.4688 2.4392 32 1 2.9746 1.3022 2.4409 33 1 1.4191 1.7423 4.5732 34 1 -1.2410 4.6016 4.1379 35 1 -1.8924 5.7455 6.2158 36 1 -0.2636 6.0153 8.0395 37 1 2.0214 5.1362 7.8005 38 1 2.6902 3.9816 5.7341 39 1 0.1787 4.4478 1.9118 40 1 1.6615 5.2696 2.4528 41 1 3.0602 3.5494 1.4914 42 1 1.8661 3.9992 0.2455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = 37.537588 kcal Electronic energy + Delta-G solvation = -20637.735560 eV Core-core repulsion = 17775.345595 eV Total energy + Delta-G solvation = -2862.389965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.44837 -38.09926 -35.03008 -32.53041 -31.21166 -30.92723 -30.11310 -29.21559 -26.45373 -24.12320 -23.40126 -22.59209 -22.05946 -21.18413 -19.20137 -17.54208 -16.64233 -16.15107 -15.73451 -14.94111 -14.80985 -14.25398 -14.10221 -13.79035 -13.43455 -13.36775 -13.18858 -12.77516 -12.42795 -12.25657 -11.88203 -11.81439 -11.50282 -11.26433 -11.06118 -10.91478 -10.81150 -10.61576 -10.46488 -10.05194 -9.88153 -9.62960 -9.33437 -8.95924 -8.93472 -8.76855 -8.39723 -8.20017 -7.14033 -5.99409 -4.02887 1.26821 1.40260 2.50962 3.32609 3.37386 3.40118 3.79585 4.41496 4.79773 4.93231 4.94655 5.01443 5.11479 5.32612 5.34043 5.47378 5.56179 5.72186 5.81614 5.94561 6.01843 6.04614 6.12410 6.20366 6.30569 6.41317 6.48118 6.51159 6.59263 6.61676 6.66597 6.72392 6.80396 6.88044 7.01863 7.14239 7.24164 7.33472 7.44517 7.67698 7.77784 7.84812 8.19907 8.36423 8.61628 9.02180 9.60903 11.06997 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031134 B = 0.004171 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.123904 B = 6711.206797 C = 7042.900702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.215 3.785 4 H -0.003 1.003 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.522 5.522 14 C 0.079 3.921 15 C -0.131 4.131 16 C -0.093 4.093 17 C -0.036 4.036 18 C -0.109 4.109 19 C -0.121 4.121 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.069 4.069 24 C 0.059 3.941 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.015 0.985 28 H 0.013 0.987 29 H 0.092 0.908 30 H 0.260 0.740 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.020 0.980 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 6.515 15.353 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.109 3.891 4 H 0.015 0.985 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.247 5.247 14 C -0.049 4.049 15 C -0.149 4.149 16 C -0.094 4.094 17 C -0.036 4.036 18 C -0.127 4.127 19 C -0.139 4.139 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.107 4.107 24 C -0.069 4.069 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.120 0.880 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.680 6.392 15.163 16.862 hybrid contribution 0.594 0.335 -0.679 0.962 sum -3.086 6.727 14.484 16.265 Atomic orbital electron populations 1.21474 0.97259 0.97588 1.01521 1.21575 0.95192 0.98168 1.00125 1.19300 0.92547 0.90878 0.86326 0.98531 1.21007 1.30979 1.11898 0.89589 0.92000 1.24895 0.95206 0.95087 0.98896 1.69871 1.36540 1.22635 1.24161 0.86637 0.79139 0.79587 0.82508 1.20398 1.21443 1.20237 1.62528 1.59230 1.01221 1.01702 1.20971 0.97465 0.97514 0.88923 1.22642 0.99282 0.94455 0.98562 1.19777 1.02111 0.94544 0.92940 1.19189 0.93481 0.97108 0.93797 1.21314 0.95811 0.97807 0.97753 1.21081 0.99441 0.99536 0.93828 1.21133 0.93916 1.00875 0.98955 1.21055 0.96411 0.98870 0.97629 1.21319 0.99273 0.99436 0.93154 1.20462 1.01416 0.97023 0.91783 1.22049 0.94853 0.90859 0.99136 0.92174 0.94112 0.96602 0.96852 0.88964 0.92974 0.89882 0.94782 0.88048 0.85832 0.86239 0.86490 0.86315 0.86129 0.90601 0.91934 0.96195 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.47 37.16 0.35 -2.31 16 2 C -0.11 -2.65 4.98 -26.73 -0.13 -2.79 16 3 C 0.22 5.27 1.73 -68.86 -0.12 5.15 16 4 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 5 C -0.50 -13.07 6.49 -34.44 -0.22 -13.29 16 6 H 0.06 1.64 6.82 -52.49 -0.36 1.28 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -24.96 11.31 55.43 0.63 -24.34 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.52 -10.96 3.83 -229.54 -0.88 -11.84 16 14 C 0.08 1.46 4.92 -5.27 -0.03 1.43 16 15 C -0.13 -2.10 9.50 -36.40 -0.35 -2.45 16 16 C -0.09 -1.45 5.31 -102.72 -0.54 -2.00 16 17 C -0.04 -0.49 5.17 -105.02 -0.54 -1.04 16 18 C -0.11 -1.39 9.75 -39.20 -0.38 -1.77 16 19 C -0.12 -1.32 10.03 -39.64 -0.40 -1.72 16 20 C -0.13 -1.35 10.04 -39.50 -0.40 -1.74 16 21 C -0.12 -1.31 10.03 -39.64 -0.40 -1.71 16 22 C -0.11 -1.41 9.68 -39.19 -0.38 -1.79 16 23 C -0.07 -1.13 6.00 -28.03 -0.17 -1.30 16 24 C 0.06 1.16 5.40 -3.63 -0.02 1.14 16 25 H 0.06 1.44 7.11 -51.93 -0.37 1.07 16 26 H 0.04 0.85 7.37 -51.93 -0.38 0.47 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.01 0.28 6.55 -51.93 -0.34 -0.06 16 29 H 0.09 2.44 6.03 -51.93 -0.31 2.12 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.08 1.53 6.26 -51.93 -0.33 1.21 16 32 H 0.03 0.65 8.12 -51.93 -0.42 0.22 16 33 H 0.10 1.46 7.98 -52.49 -0.42 1.04 16 34 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 41 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 42 H 0.09 1.91 6.23 -51.93 -0.32 1.58 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -27.64 331.52 -10.71 -38.35 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.61 Total: 1.50 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -3.82 Total: -24.65 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.25 Total: -36.18 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.64 -10.71 -38.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.888 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds