Wall clock time and date at job start Mon Mar 30 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47179 * 49.21822 * 3 2 1 5 5 C 1.36935 * 120.00017 * 263.91409 * 4 3 2 6 6 H 1.08004 * 120.00256 * 199.39842 * 5 4 3 7 7 C 1.38811 * 120.00206 * 19.39288 * 5 4 3 8 8 N 1.31621 * 119.99588 * 22.29000 * 7 5 4 9 9 Si 1.86804 * 120.00383 * 202.28621 * 7 5 4 10 10 H 1.48494 * 109.46893 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47179 * 120.00324 * 9 7 5 12 12 H 1.48500 * 109.47086 * 240.00434 * 9 7 5 13 13 C 1.46495 * 119.99927 * 83.91332 * 4 3 2 14 14 C 1.52999 * 109.47085 * 90.00092 * 13 4 3 15 15 C 1.50706 * 109.47153 * 179.97438 * 14 13 4 16 16 C 1.38234 * 120.00216 * 269.72407 * 15 14 13 17 17 C 1.38233 * 120.00182 * 180.32255 * 16 15 14 18 18 C 1.38235 * 119.99952 * 359.94987 * 17 16 15 19 19 C 1.50694 * 119.99916 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.47473 * 300.02565 * 19 18 17 21 21 C 1.53008 * 109.46927 * 60.02844 * 19 18 17 22 22 C 1.38237 * 119.99717 * 0.02583 * 18 17 16 23 23 C 1.38228 * 120.00287 * 359.97438 * 22 18 17 24 24 H 4.40636 * 5.51505 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47266 * 289.21956 * 3 2 1 26 26 H 1.09000 * 109.47313 * 169.21565 * 3 2 1 27 27 H 0.97005 * 119.99914 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47139 * 329.99979 * 13 4 3 29 29 H 1.09002 * 109.47031 * 210.00107 * 13 4 3 30 30 H 1.08996 * 109.47225 * 59.99940 * 14 13 4 31 31 H 1.09002 * 109.47198 * 299.99912 * 14 13 4 32 32 H 1.07999 * 119.99776 * 0.28207 * 16 15 14 33 33 H 1.07999 * 119.99785 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47287 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47142 * 60.00274 * 20 19 18 36 36 H 1.09001 * 109.47376 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.47146 * 299.99753 * 20 19 18 38 38 H 1.08996 * 109.46522 * 299.99511 * 21 19 18 39 39 H 1.08993 * 109.47031 * 59.99657 * 21 19 18 40 40 H 1.09001 * 109.47056 * 179.97438 * 21 19 18 41 41 H 1.08006 * 119.99435 * 179.97438 * 22 18 17 42 42 H 1.08001 * 119.99948 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.9013 -1.0459 5 6 3.4820 -2.1883 -0.7327 6 1 4.1208 -2.7521 -1.3965 7 6 3.0132 -2.7685 0.4379 8 7 1.9283 -2.2988 1.0165 9 14 3.9218 -4.2160 1.1921 10 1 5.1022 -4.5498 0.3553 11 1 4.3715 -3.8589 2.5616 12 1 3.0143 -5.3895 1.2593 13 6 3.2518 -0.4264 -2.4268 14 6 4.6447 0.1677 -2.6454 15 6 4.7654 0.6557 -4.0661 16 6 5.2322 -0.1940 -5.0515 17 6 5.3492 0.2557 -6.3534 18 6 4.9985 1.5547 -6.6701 19 6 5.1266 2.0451 -8.0893 20 6 6.5856 1.9361 -8.5368 21 6 4.2470 1.1915 -9.0051 22 6 4.5312 2.4042 -5.6847 23 6 4.4142 1.9546 -4.3829 24 1 -1.0499 -0.0001 -0.0004 25 1 3.0094 -0.3375 0.9704 26 1 3.0088 1.0103 -0.1923 27 1 1.6004 -2.7044 1.8344 28 1 2.4974 0.3379 -2.6133 29 1 3.1009 -1.2606 -3.1119 30 1 5.3990 -0.5967 -2.4588 31 1 4.7955 1.0019 -1.9602 32 1 5.5061 -1.2090 -4.8041 33 1 5.7143 -0.4081 -7.1231 34 1 4.8064 3.0856 -8.1445 35 1 6.9058 0.8957 -8.4817 36 1 6.6782 2.2904 -9.5635 37 1 7.2121 2.5442 -7.8844 38 1 4.5673 0.1511 -8.9499 39 1 3.2077 1.2692 -8.6863 40 1 4.3393 1.5465 -10.0316 41 1 4.2576 3.4193 -5.9322 42 1 4.0495 2.6185 -3.6130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308963303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:07 Heat of formation + Delta-G solvation = 81.950752 kcal Electronic energy + Delta-G solvation = -19872.580047 eV Core-core repulsion = 17012.115981 eV Total energy + Delta-G solvation = -2860.464066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.52150 -36.55121 -35.43981 -32.45887 -31.52402 -30.73497 -30.32214 -27.49512 -27.28524 -25.96511 -24.12393 -22.67855 -21.82060 -20.52231 -19.72373 -17.43865 -16.28214 -16.24410 -15.46474 -15.11799 -14.71651 -14.07368 -13.80302 -13.68749 -13.63606 -13.46378 -13.15398 -13.04303 -12.52992 -12.26821 -12.18596 -11.82458 -11.49629 -11.40597 -11.17784 -11.09452 -11.06074 -10.80240 -10.62507 -10.48541 -10.29058 -10.03021 -9.93591 -8.90027 -8.76124 -8.69588 -8.45579 -8.22346 -6.92546 -5.76673 -3.19064 1.57440 1.62725 3.37383 3.46115 3.47960 3.95907 4.20735 4.41510 4.55704 4.62542 4.72763 5.07641 5.14555 5.19759 5.25096 5.34956 5.37347 5.46071 5.57712 5.66138 5.67450 5.77737 5.81887 5.85721 5.87172 5.90641 6.08684 6.11141 6.24428 6.25064 6.28052 6.46574 6.63756 6.66222 6.73324 6.78190 6.97826 7.06757 7.22314 7.26841 7.44883 7.78275 8.31840 9.12685 9.22869 9.80038 10.27343 11.26582 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.003764 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.678154 B = 7437.264249 C = 8098.149882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.096 4.096 3 C 0.268 3.732 4 N -0.587 5.587 5 C -0.265 4.265 6 H 0.074 0.926 7 C 0.004 3.996 8 N -0.886 5.886 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.292 1.292 13 C 0.157 3.843 14 C -0.103 4.103 15 C -0.065 4.065 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.095 4.095 19 C -0.054 4.054 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.118 4.118 23 C -0.118 4.118 24 H 0.190 0.810 25 H 0.091 0.909 26 H 0.036 0.964 27 H 0.253 0.747 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.115 0.885 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 9.285 -15.100 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.099 4.099 3 C 0.143 3.857 4 N -0.306 5.306 5 C -0.394 4.394 6 H 0.092 0.908 7 C -0.196 4.196 8 N -0.529 5.529 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.219 1.219 13 C 0.030 3.970 14 C -0.143 4.143 15 C -0.066 4.066 16 C -0.135 4.135 17 C -0.132 4.132 18 C -0.095 4.095 19 C -0.073 4.073 20 C -0.200 4.200 21 C -0.201 4.201 22 C -0.136 4.136 23 C -0.137 4.137 24 H 0.207 0.793 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.133 0.867 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.445 9.190 -14.941 18.688 hybrid contribution -0.021 -0.975 0.548 1.119 sum 6.423 8.215 -14.393 17.774 Atomic orbital electron populations 1.24169 0.95337 1.07380 1.05163 1.24311 0.95347 0.94175 0.96061 1.17723 0.82860 0.90757 0.94386 1.44074 1.74683 1.09967 1.01895 1.19214 1.24373 0.89926 1.05924 0.90795 1.24936 0.96128 0.98256 1.00234 1.70152 1.19410 1.42981 1.20368 0.86308 0.79541 0.82166 0.79282 1.20281 1.21546 1.21911 1.20707 0.92306 0.96960 0.86988 1.21339 1.01796 1.00844 0.90324 1.20143 0.96445 0.93431 0.96589 1.21089 1.00083 0.99667 0.92648 1.20882 1.00736 0.95290 0.96256 1.19723 1.00659 0.94313 0.94798 1.20074 0.95990 0.99633 0.91557 1.21852 0.95457 1.02124 1.00610 1.21857 0.99785 0.99956 0.98518 1.20968 1.00566 0.99099 0.92942 1.21052 1.00541 0.95814 0.96255 0.79308 0.89072 0.94563 0.93628 0.94459 0.93350 0.90985 0.91725 0.86153 0.86712 0.90844 0.92484 0.92715 0.92619 0.92454 0.92508 0.92717 0.86728 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.05 19.25 29.55 0.57 -6.48 16 2 C -0.10 -2.39 11.50 -37.13 -0.43 -2.81 16 3 C 0.27 6.40 5.41 -6.83 -0.04 6.36 16 4 N -0.59 -14.36 2.49 -176.58 -0.44 -14.80 16 5 C -0.27 -7.11 9.63 -15.06 -0.15 -7.26 16 6 H 0.07 1.95 7.92 -52.48 -0.42 1.53 16 7 C 0.00 0.10 4.82 -17.43 -0.08 0.02 16 8 N -0.89 -25.37 9.61 55.49 0.53 -24.84 16 9 Si 0.90 21.46 29.61 -169.99 -5.03 16.43 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C 0.16 3.25 5.66 -4.04 -0.02 3.22 16 14 C -0.10 -1.78 5.67 -27.88 -0.16 -1.94 16 15 C -0.07 -1.00 5.13 -104.62 -0.54 -1.54 16 16 C -0.12 -1.68 9.70 -39.58 -0.38 -2.06 16 17 C -0.11 -1.44 8.71 -39.58 -0.34 -1.78 16 18 C -0.09 -1.14 4.78 -104.63 -0.50 -1.64 16 19 C -0.05 -0.51 3.09 -91.77 -0.28 -0.79 16 20 C -0.14 -1.20 9.01 37.15 0.33 -0.87 16 21 C -0.14 -1.26 9.01 37.16 0.33 -0.93 16 22 C -0.12 -1.47 9.67 -39.59 -0.38 -1.86 16 23 C -0.12 -1.66 9.70 -39.59 -0.38 -2.05 16 24 H 0.19 3.72 7.80 -54.10 -0.42 3.29 16 25 H 0.09 2.36 6.59 -51.93 -0.34 2.01 16 26 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 30 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 31 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 32 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.11 1.24 7.10 -52.49 -0.37 0.87 16 34 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 35 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.11 1.20 7.95 -52.48 -0.42 0.78 16 42 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -29.60 351.18 -9.02 -38.62 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.92 Total: 1.70 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -2.45 Total: -22.39 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.09 Total: -39.64 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.60 -9.02 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308963303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.568 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds