Wall clock time and date at job start Mon Mar 30 2020 01:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47017 * 55.00082 * 11 10 9 13 13 N 1.46904 * 109.47449 * 295.00426 * 11 10 9 14 14 C 1.50698 * 109.47721 * 175.00208 * 11 10 9 15 15 O 1.21279 * 120.00178 * 99.99093 * 14 11 10 16 16 N 1.34776 * 119.99790 * 280.00489 * 14 11 10 17 17 C 1.47147 * 120.98521 * 359.71267 * 16 14 11 18 18 C 1.52879 * 108.60905 * 230.50132 * 17 16 14 19 19 O 1.42957 * 109.30000 * 307.93727 * 18 17 16 20 20 C 1.42960 * 114.16905 * 62.44490 * 19 18 17 21 21 H 1.08995 * 109.55607 * 57.37173 * 20 19 18 22 22 C 1.52999 * 109.51186 * 177.50106 * 20 19 18 23 23 N 1.46903 * 109.47020 * 299.74512 * 22 20 19 24 24 C 1.47154 * 120.98020 * 179.97438 * 16 14 11 25 25 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 1.00898 * 110.99372 * 300.00401 * 13 11 10 31 31 H 1.00904 * 110.99944 * 63.94834 * 13 11 10 32 32 H 1.09004 * 109.68095 * 350.28270 * 17 16 14 33 33 H 1.09003 * 109.68600 * 110.83376 * 17 16 14 34 34 H 1.08999 * 109.58634 * 187.91440 * 18 17 16 35 35 H 1.09002 * 109.40712 * 67.84098 * 18 17 16 36 36 H 1.08998 * 109.47367 * 59.74396 * 22 20 19 37 37 H 1.09004 * 109.47056 * 179.74825 * 22 20 19 38 38 H 1.00903 * 110.99797 * 56.04641 * 23 22 20 39 39 H 1.00897 * 111.00024 * 180.02562 * 23 22 20 40 40 H 1.08998 * 109.68517 * 249.16093 * 24 16 14 41 41 H 1.08998 * 109.68075 * 9.68458 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 1 5.9155 -2.0469 0.8391 13 7 6.0402 -2.0517 -1.2580 14 6 6.0539 -4.0520 0.1217 15 8 6.4271 -4.6515 -0.8643 16 7 6.0884 -4.6516 1.3282 17 6 5.6465 -3.9425 2.5394 18 6 6.7339 -4.0743 3.6060 19 8 7.0743 -5.4536 3.7657 20 6 7.6220 -6.0609 2.5932 21 1 8.5078 -5.5101 2.2769 22 6 8.0039 -7.5105 2.8994 23 7 9.0074 -7.5364 3.9719 24 6 6.5744 -6.0329 1.4740 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.6584 -3.1503 0.8892 29 1 3.6578 -3.1506 -0.8907 30 1 5.7159 -2.5809 -2.0536 31 1 5.7707 -1.0824 -1.3344 32 1 5.4849 -2.8892 2.3098 33 1 4.7205 -4.3849 2.9067 34 1 6.3672 -3.6777 4.5527 35 1 7.6163 -3.5153 3.2946 36 1 7.1180 -8.0602 3.2173 37 1 8.4173 -7.9742 2.0037 38 1 8.6718 -7.0551 4.7928 39 1 9.2766 -8.4835 4.1924 40 1 5.7434 -6.6892 1.7323 41 1 7.0264 -6.3636 0.5389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326058340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:49 Heat of formation + Delta-G solvation = -83.096898 kcal Electronic energy + Delta-G solvation = -21666.933335 eV Core-core repulsion = 18388.463003 eV Total energy + Delta-G solvation = -3278.470332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53431 -38.69457 -35.76670 -35.25619 -34.57229 -32.85695 -31.31171 -30.37237 -28.53215 -27.06249 -25.19434 -23.70035 -22.94655 -21.30500 -20.31311 -19.05917 -17.72379 -16.96867 -16.78314 -16.28081 -16.15690 -15.58156 -15.05644 -14.92300 -14.51398 -14.33435 -14.24029 -14.08028 -13.63067 -13.32305 -12.85380 -12.71904 -12.69934 -12.39659 -12.00379 -11.73823 -11.53268 -11.33564 -11.01980 -10.92614 -10.39665 -10.30590 -10.13748 -9.90873 -9.43642 -9.35642 -9.03223 -8.65874 -8.63118 -8.37669 -6.15052 -4.14994 2.74221 2.79615 3.22280 3.30664 3.31231 3.43204 4.12635 4.34263 4.49643 4.65097 4.70278 4.82830 4.86705 4.94720 5.03215 5.12913 5.18081 5.22815 5.34026 5.38098 5.45251 5.52680 5.61186 5.63793 5.79482 6.07430 6.24299 6.33316 6.59500 6.75516 6.88597 7.03353 7.12973 7.15971 7.20489 7.43042 7.62415 7.72636 8.25700 8.40911 8.88764 9.45938 10.98148 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.004067 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.332388 B = 6883.299920 C = 7240.665996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.131 4.131 11 C 0.071 3.929 12 H 0.097 0.903 13 N -0.830 5.830 14 C 0.531 3.469 15 O -0.534 6.534 16 N -0.617 5.617 17 C 0.068 3.932 18 C 0.051 3.949 19 O -0.379 6.379 20 C 0.080 3.920 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.849 5.849 24 C 0.084 3.916 25 H 0.264 0.736 26 H 0.018 0.982 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.348 0.652 31 H 0.351 0.649 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.087 0.913 38 H 0.350 0.650 39 H 0.341 0.659 40 H 0.073 0.927 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.342 -10.862 8.321 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.170 4.170 11 C -0.043 4.043 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.320 3.680 15 O -0.410 6.410 16 N -0.353 5.353 17 C -0.055 4.055 18 C -0.027 4.027 19 O -0.298 6.298 20 C 0.021 3.979 21 H 0.089 0.911 22 C -0.059 4.059 23 N -0.379 5.379 24 C -0.039 4.039 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.091 0.909 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.542 -10.906 7.698 21.256 hybrid contribution -1.578 0.718 0.164 1.741 sum 14.964 -10.188 7.862 19.736 Atomic orbital electron populations 1.69910 1.06350 1.27050 1.50537 1.25044 0.94758 0.99230 0.94382 0.86769 0.80287 0.83537 0.78612 1.20200 1.21288 1.18980 1.21052 0.89165 0.94546 1.51488 0.91075 1.19568 0.97621 0.91201 0.96302 1.22226 0.91072 1.01223 1.02505 1.21545 0.95827 0.91538 0.95433 0.88503 1.58749 1.66724 1.07453 1.03330 1.20826 0.76556 0.88752 0.81915 1.90633 1.47693 1.66152 1.36490 1.48054 1.65591 1.14209 1.07446 1.22484 0.98299 0.99412 0.85309 1.22908 0.97209 0.82820 0.99717 1.87864 1.82783 1.24349 1.34779 1.22540 0.95166 0.94606 0.85634 0.91071 1.21721 0.93989 0.93784 0.96381 1.58642 1.43910 1.21876 1.13482 1.22180 0.97767 0.83651 1.00310 0.92589 0.96386 0.97011 0.91803 0.91996 0.83789 0.83422 0.87862 0.90043 0.87323 0.92509 0.94440 0.89461 0.83706 0.84623 0.90889 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.21 3.81 -27.88 -0.11 -0.31 16 10 C -0.13 -2.42 4.59 -26.73 -0.12 -2.55 16 11 C 0.07 1.14 2.36 -68.86 -0.16 0.98 16 12 H 0.10 1.41 6.50 -51.92 -0.34 1.07 16 13 N -0.83 -13.34 8.94 -5.65 -0.05 -13.39 16 14 C 0.53 8.68 6.96 -10.99 -0.08 8.60 16 15 O -0.53 -10.24 15.72 5.56 0.09 -10.15 16 16 N -0.62 -8.29 3.02 -172.51 -0.52 -8.81 16 17 C 0.07 0.76 5.74 -3.75 -0.02 0.74 16 18 C 0.05 0.49 6.97 37.10 0.26 0.74 16 19 O -0.38 -4.03 9.73 -35.23 -0.34 -4.38 16 20 C 0.08 0.82 3.05 -26.56 -0.08 0.74 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 22 C 0.07 0.61 6.52 -3.82 -0.02 0.58 16 23 N -0.85 -6.77 9.62 -10.37 -0.10 -6.87 16 24 C 0.08 0.99 5.93 -3.51 -0.02 0.97 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.25 6.29 -51.93 -0.33 -0.08 16 28 H 0.06 1.16 7.29 -51.93 -0.38 0.78 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.35 5.73 8.58 -39.29 -0.34 5.39 16 31 H 0.35 5.38 7.55 -39.29 -0.30 5.09 16 32 H 0.10 1.15 5.39 -51.93 -0.28 0.87 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.35 2.80 8.39 -39.29 -0.33 2.47 16 39 H 0.34 2.02 9.08 -39.29 -0.36 1.66 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.27 7.08 -51.93 -0.37 0.90 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -32.44 325.08 -7.07 -39.51 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.35 Total: 11.78 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.79 Total: -2.36 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.10 Total: -55.41 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.26 Total: -14.53 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.44 -7.07 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326058340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.589 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds