Wall clock time and date at job start Mon Mar 30 2020 01:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47017 * 55.00082 * 11 10 9 13 13 N 1.46904 * 109.47449 * 295.00426 * 11 10 9 14 14 C 1.50698 * 109.47721 * 175.00208 * 11 10 9 15 15 O 1.21279 * 120.00178 * 99.99093 * 14 11 10 16 16 N 1.34776 * 119.99790 * 280.00489 * 14 11 10 17 17 C 1.47147 * 120.98521 * 359.71267 * 16 14 11 18 18 C 1.52879 * 108.60905 * 230.50132 * 17 16 14 19 19 O 1.42957 * 109.30000 * 307.93727 * 18 17 16 20 20 C 1.42960 * 114.16905 * 62.44490 * 19 18 17 21 21 H 1.08995 * 109.55607 * 57.37173 * 20 19 18 22 22 C 1.52999 * 109.51186 * 177.50106 * 20 19 18 23 23 N 1.46903 * 109.47020 * 299.74512 * 22 20 19 24 24 C 1.47154 * 120.98020 * 179.97438 * 16 14 11 25 25 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 1.00898 * 110.99372 * 300.00401 * 13 11 10 31 31 H 1.00904 * 110.99944 * 63.94834 * 13 11 10 32 32 H 1.09004 * 109.68095 * 350.28270 * 17 16 14 33 33 H 1.09003 * 109.68600 * 110.83376 * 17 16 14 34 34 H 1.08999 * 109.58634 * 187.91440 * 18 17 16 35 35 H 1.09002 * 109.40712 * 67.84098 * 18 17 16 36 36 H 1.08998 * 109.47367 * 59.74396 * 22 20 19 37 37 H 1.09004 * 109.47056 * 179.74825 * 22 20 19 38 38 H 1.00903 * 110.99797 * 56.04641 * 23 22 20 39 39 H 1.00897 * 111.00024 * 180.02562 * 23 22 20 40 40 H 1.08998 * 109.68517 * 249.16093 * 24 16 14 41 41 H 1.08998 * 109.68075 * 9.68458 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 1 5.9155 -2.0469 0.8391 13 7 6.0402 -2.0517 -1.2580 14 6 6.0539 -4.0520 0.1217 15 8 6.4271 -4.6515 -0.8643 16 7 6.0884 -4.6516 1.3282 17 6 5.6465 -3.9425 2.5394 18 6 6.7339 -4.0743 3.6060 19 8 7.0743 -5.4536 3.7657 20 6 7.6220 -6.0609 2.5932 21 1 8.5078 -5.5101 2.2769 22 6 8.0039 -7.5105 2.8994 23 7 9.0074 -7.5364 3.9719 24 6 6.5744 -6.0329 1.4740 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.6584 -3.1503 0.8892 29 1 3.6578 -3.1506 -0.8907 30 1 5.7159 -2.5809 -2.0536 31 1 5.7707 -1.0824 -1.3344 32 1 5.4849 -2.8892 2.3098 33 1 4.7205 -4.3849 2.9067 34 1 6.3672 -3.6777 4.5527 35 1 7.6163 -3.5153 3.2946 36 1 7.1180 -8.0602 3.2173 37 1 8.4173 -7.9742 2.0037 38 1 8.6718 -7.0551 4.7928 39 1 9.2766 -8.4835 4.1924 40 1 5.7434 -6.6892 1.7323 41 1 7.0264 -6.3636 0.5389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326058340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:49 Heat of formation + Delta-G solvation = -110.868960 kcal Electronic energy + Delta-G solvation = -21668.137622 eV Core-core repulsion = 18388.463003 eV Total energy + Delta-G solvation = -3279.674619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62196 -39.73347 -37.23776 -36.15705 -35.44232 -34.83185 -32.16652 -32.07928 -29.57181 -28.39308 -26.44961 -24.90376 -24.00223 -22.38906 -21.77715 -20.22573 -19.13918 -18.61319 -17.80583 -17.24189 -17.03916 -16.47805 -16.27390 -16.17231 -15.98112 -15.59921 -15.35450 -15.04226 -14.95835 -14.62263 -14.48368 -14.02700 -13.68995 -13.59956 -13.26030 -12.97752 -12.74494 -12.55946 -12.30425 -12.10851 -11.92253 -11.76110 -11.67858 -11.42275 -11.22116 -10.79246 -10.74942 -9.74990 -9.67033 -9.59970 -8.30103 -6.36040 1.39228 1.40185 1.47748 1.51737 1.72738 2.36206 2.66393 3.05601 3.32574 3.44133 3.65009 3.86785 3.90384 3.96073 3.99059 4.05492 4.12597 4.24889 4.33922 4.40097 4.53579 4.58860 4.66099 4.69437 4.77674 4.86829 4.91540 4.95746 5.29594 5.33049 5.44150 5.61557 5.97594 6.06463 6.18931 6.22917 6.25151 6.45312 6.60047 6.72477 7.02634 7.28962 8.86736 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.004067 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.332388 B = 6883.299920 C = 7240.665996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.234 1.234 7 C -0.535 4.535 8 H 0.025 0.975 9 C -0.004 4.004 10 C -0.118 4.118 11 C 0.081 3.919 12 H 0.120 0.880 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.569 6.569 16 N -0.614 5.614 17 C 0.062 3.938 18 C 0.053 3.947 19 O -0.383 6.383 20 C 0.088 3.912 21 H 0.059 0.941 22 C 0.075 3.925 23 N -0.855 5.855 24 C 0.082 3.918 25 H 0.266 0.734 26 H 0.035 0.965 27 H 0.023 0.977 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.345 0.655 31 H 0.356 0.644 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.350 0.650 39 H 0.353 0.647 40 H 0.081 0.919 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.482 -10.041 9.620 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.157 1.157 7 C -0.573 4.573 8 H 0.044 0.956 9 C -0.042 4.042 10 C -0.158 4.158 11 C -0.034 4.034 12 H 0.138 0.862 13 N -0.362 5.362 14 C 0.314 3.686 15 O -0.448 6.448 16 N -0.348 5.348 17 C -0.060 4.060 18 C -0.024 4.024 19 O -0.302 6.302 20 C 0.029 3.971 21 H 0.077 0.923 22 C -0.056 4.056 23 N -0.386 5.386 24 C -0.041 4.041 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.152 0.848 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.113 0.887 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.099 0.901 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.706 -10.112 9.038 23.106 hybrid contribution -2.318 0.356 -0.216 2.355 sum 16.388 -9.756 8.823 21.014 Atomic orbital electron populations 1.70082 1.08596 1.28264 1.52427 1.26084 0.95605 1.03797 0.93925 0.85611 0.79859 0.77684 0.79197 1.19449 1.21419 1.15676 1.21417 0.92160 0.92872 1.50822 0.95649 1.19490 0.93823 0.93493 0.97358 1.22027 0.93185 0.98997 1.01580 1.21459 0.93536 0.92072 0.96300 0.86210 1.58765 1.66498 1.07745 1.03214 1.20874 0.76529 0.88800 0.82354 1.90617 1.49541 1.66820 1.37820 1.48137 1.64431 1.14847 1.07347 1.22694 0.99137 0.99388 0.84788 1.23025 0.96685 0.82452 1.00269 1.87874 1.82661 1.24946 1.34703 1.22453 0.93938 0.95668 0.85053 0.92326 1.21697 0.94472 0.92483 0.96954 1.58627 1.43703 1.22909 1.13400 1.22296 0.98448 0.82833 1.00512 0.92510 0.94681 0.95839 0.91728 0.94138 0.84161 0.82821 0.87475 0.89826 0.84789 0.92271 0.93851 0.88747 0.83694 0.83280 0.90129 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.95 41.71 27.47 68.60 1.88 43.60 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.23 -8.99 6.54 99.48 0.65 -8.34 16 7 C -0.53 -29.54 9.66 25.60 0.25 -29.30 16 8 H 0.03 1.58 7.99 -2.91 -0.02 1.55 16 9 C 0.00 -0.18 3.81 29.85 0.11 -0.06 16 10 C -0.12 -4.28 4.59 30.59 0.14 -4.14 16 11 C 0.08 2.46 2.36 44.17 0.10 2.56 16 12 H 0.12 3.09 6.50 -2.38 -0.02 3.08 16 13 N -0.83 -25.21 8.94 -171.79 -1.54 -26.75 16 14 C 0.53 16.69 6.96 87.66 0.61 17.30 16 15 O -0.57 -21.73 15.72 -3.03 -0.05 -21.78 16 16 N -0.61 -15.69 3.02 -818.09 -2.47 -18.17 16 17 C 0.06 1.26 5.74 86.22 0.50 1.76 16 18 C 0.05 0.87 6.97 71.94 0.50 1.37 16 19 O -0.38 -7.29 9.73 -148.98 -1.45 -8.74 16 20 C 0.09 1.68 3.05 30.70 0.09 1.78 16 21 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 22 C 0.08 1.14 6.52 86.30 0.56 1.70 16 23 N -0.85 -12.07 9.62 -186.71 -1.80 -13.87 16 24 C 0.08 1.85 5.93 86.37 0.51 2.37 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 26 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 27 H 0.02 0.94 6.29 -2.39 -0.02 0.93 16 28 H 0.06 2.31 7.29 -2.39 -0.02 2.29 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.35 11.06 8.58 -89.70 -0.77 10.29 16 31 H 0.36 10.01 7.55 -89.69 -0.68 9.33 16 32 H 0.11 2.09 5.39 -2.38 -0.01 2.07 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.35 4.94 8.39 -89.69 -0.75 4.19 16 39 H 0.35 3.52 9.08 -89.70 -0.81 2.71 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 2.24 7.08 -2.39 -0.02 2.23 16 Total: -1.00 -70.81 325.08 -3.27 -74.08 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -1.99 Total: 34.14 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 3.84 Total: -4.06 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -5.51 Total: -117.23 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -1.50 Total: -30.52 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.60 kcal Total: -70.81 -3.27 -74.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326058340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.792 kcal (2) G-P(sol) polarization free energy of solvation -70.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds