Wall clock time and date at job start Mon Mar 30 2020 01:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00095 * 2 1 4 4 H 1.48502 * 109.46865 * 270.00081 * 3 2 1 5 5 H 1.48500 * 109.47090 * 29.99932 * 3 2 1 6 6 H 1.48496 * 109.47240 * 149.99844 * 3 2 1 7 7 C 1.37883 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00470 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99240 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46833 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47415 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46620 * 305.00224 * 11 10 9 13 13 N 1.46900 * 109.47027 * 64.99689 * 11 10 9 14 14 C 1.50694 * 109.47312 * 184.99614 * 11 10 9 15 15 O 1.21279 * 120.00393 * 260.00033 * 14 11 10 16 16 N 1.34781 * 119.99725 * 80.00325 * 14 11 10 17 17 C 1.47148 * 120.98255 * 0.02562 * 16 14 11 18 18 C 1.53304 * 108.38548 * 230.51772 * 17 16 14 19 19 O 1.42962 * 109.26322 * 307.72197 * 18 17 16 20 20 C 1.42965 * 114.17053 * 62.49431 * 19 18 17 21 21 H 1.09007 * 109.50701 * 57.45546 * 20 19 18 22 22 C 1.52997 * 109.51258 * 177.55257 * 20 19 18 23 23 N 1.46899 * 109.47254 * 299.90162 * 22 20 19 24 24 C 1.47153 * 120.98017 * 180.02562 * 16 14 11 25 25 H 0.96996 * 119.99638 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47483 * 60.00117 * 9 7 2 27 27 H 1.09004 * 109.47527 * 299.99732 * 9 7 2 28 28 H 1.09000 * 109.47442 * 59.99607 * 10 9 7 29 29 H 1.08999 * 109.46969 * 299.99683 * 10 9 7 30 30 H 1.00901 * 110.99767 * 296.05018 * 13 11 10 31 31 H 1.00900 * 111.00105 * 60.00356 * 13 11 10 32 32 H 1.09001 * 109.68113 * 350.23737 * 17 16 14 33 33 H 1.09002 * 109.68404 * 110.75858 * 17 16 14 34 34 H 1.09000 * 109.51224 * 67.62241 * 18 17 16 35 35 H 1.08993 * 109.51190 * 187.72476 * 18 17 16 36 36 H 1.09002 * 109.47153 * 179.90159 * 22 20 19 37 37 H 1.09001 * 109.46832 * 59.90350 * 22 20 19 38 38 H 1.00908 * 110.99847 * 56.04959 * 23 22 20 39 39 H 1.00900 * 111.00464 * 179.97438 * 23 22 20 40 40 H 1.08994 * 109.68223 * 9.76007 * 24 16 14 41 41 H 1.09002 * 109.67766 * 249.20505 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0025 12 1 0.7879 -5.0064 0.8440 13 7 0.7292 -5.1194 -1.2530 14 6 2.4550 -6.1297 0.1275 15 8 2.7872 -6.7540 -0.8578 16 7 2.9573 -6.4579 1.3343 17 6 2.5687 -5.7156 2.5439 18 6 3.8436 -5.3036 3.2889 19 8 4.6666 -6.4554 3.4880 20 6 5.1199 -7.0672 2.2780 21 1 5.6691 -6.3365 1.6842 22 6 6.0362 -8.2457 2.6133 23 7 7.1936 -7.7638 3.3788 24 6 3.9107 -7.5692 1.4812 25 1 -0.4849 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8714 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 0.0244 -4.4014 -1.3300 31 1 1.3493 -5.1043 -2.0488 32 1 2.0039 -4.8266 2.2634 33 1 1.9578 -6.3517 3.1846 34 1 4.3875 -4.5658 2.6992 35 1 3.5780 -4.8737 4.2547 36 1 6.3799 -8.7127 1.6903 37 1 5.4863 -8.9759 3.2071 38 1 6.8986 -7.2698 4.2078 39 1 7.8143 -8.5240 3.6130 40 1 4.2345 -7.9075 0.4970 41 1 3.4356 -8.3923 2.0150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326058342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:52 Heat of formation + Delta-G solvation = -87.447087 kcal Electronic energy + Delta-G solvation = -21775.252996 eV Core-core repulsion = 18496.594025 eV Total energy + Delta-G solvation = -3278.658970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45817 -38.59180 -35.63963 -35.17347 -34.49911 -32.89794 -31.22631 -29.94018 -28.39903 -26.81859 -25.08362 -23.65069 -22.99163 -21.24335 -20.51050 -18.89574 -17.62907 -16.86699 -16.41763 -16.16880 -16.05160 -15.45037 -15.08896 -14.81752 -14.50622 -14.34836 -14.16772 -13.95732 -13.64171 -13.15485 -12.85642 -12.68320 -12.27832 -12.16078 -11.76989 -11.68415 -11.44105 -11.10141 -10.95236 -10.84552 -10.70199 -10.23850 -10.04132 -9.92514 -9.31860 -9.23532 -8.97169 -8.57220 -8.47518 -8.23124 -6.12007 -4.15422 2.81580 2.86905 3.25241 3.32208 3.35047 3.51782 4.18600 4.36411 4.59128 4.73798 4.76858 4.89949 4.94958 5.08789 5.13000 5.24293 5.27316 5.27484 5.42283 5.49419 5.51846 5.64687 5.66364 5.73621 5.84626 6.20862 6.36601 6.47123 6.80450 6.81767 6.97307 7.18798 7.29579 7.46237 7.52876 7.58047 7.84519 7.86507 8.26585 8.33508 8.90422 9.49918 10.98807 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.004585 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.279714 B = 6105.038885 C = 6977.082839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.139 4.139 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.830 5.830 14 C 0.530 3.470 15 O -0.536 6.536 16 N -0.618 5.618 17 C 0.068 3.932 18 C 0.050 3.950 19 O -0.380 6.380 20 C 0.078 3.922 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.848 5.848 24 C 0.086 3.914 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.355 0.645 31 H 0.346 0.654 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.350 0.650 39 H 0.341 0.659 40 H 0.100 0.900 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.729 -14.445 7.978 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.179 4.179 11 C -0.040 4.040 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.319 3.681 15 O -0.412 6.412 16 N -0.354 5.354 17 C -0.055 4.055 18 C -0.027 4.027 19 O -0.299 6.299 20 C 0.019 3.981 21 H 0.090 0.910 22 C -0.058 4.058 23 N -0.379 5.379 24 C -0.038 4.038 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.159 0.841 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.163 0.837 39 H 0.153 0.847 40 H 0.118 0.882 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.712 -15.015 7.233 18.364 hybrid contribution 0.317 1.469 0.402 1.555 sum 8.028 -13.547 7.635 17.500 Atomic orbital electron populations 1.69945 1.06023 1.26835 1.50332 1.25004 0.94856 0.99296 0.95050 0.86589 0.79850 0.83345 0.78220 1.20604 1.21124 1.19853 1.21160 0.93003 0.90830 1.51281 0.92722 1.19100 0.93646 0.91051 0.97399 1.22438 0.99954 0.93920 1.01564 1.21500 0.94673 0.92263 0.95609 0.88515 1.58749 1.18464 1.55910 1.03144 1.20953 0.80988 0.84395 0.81761 1.90623 1.60325 1.53603 1.36610 1.48080 1.45866 1.33915 1.07563 1.22563 0.98024 0.98211 0.86718 1.22981 0.90447 0.87639 1.01648 1.87847 1.68256 1.44084 1.29703 1.22535 0.93330 0.95594 0.86641 0.90997 1.21711 0.90647 0.94332 0.99074 1.58640 1.18372 1.31544 1.29302 1.22143 0.89973 0.89489 1.02203 0.92842 0.96353 0.96331 0.92536 0.92579 0.82971 0.84102 0.87473 0.90609 0.91997 0.87319 0.89527 0.94591 0.83660 0.84694 0.88188 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.59 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.68 4.45 -26.73 -0.12 -2.80 16 11 C 0.07 1.27 2.35 -68.87 -0.16 1.11 16 12 H 0.10 1.56 6.88 -51.93 -0.36 1.20 16 13 N -0.83 -14.39 8.94 -5.66 -0.05 -14.44 16 14 C 0.53 9.05 6.96 -10.99 -0.08 8.97 16 15 O -0.54 -10.62 15.72 5.56 0.09 -10.53 16 16 N -0.62 -8.66 3.02 -172.29 -0.52 -9.18 16 17 C 0.07 0.81 6.01 -3.53 -0.02 0.78 16 18 C 0.05 0.56 6.98 37.31 0.26 0.82 16 19 O -0.38 -4.40 9.73 -35.23 -0.34 -4.74 16 20 C 0.08 0.88 3.05 -26.60 -0.08 0.79 16 21 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 22 C 0.07 0.66 6.52 -3.83 -0.02 0.64 16 23 N -0.85 -7.44 9.62 -10.37 -0.10 -7.54 16 24 C 0.09 1.04 5.93 -3.55 -0.02 1.02 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 26 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 1.04 6.92 -51.93 -0.36 0.68 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.35 6.10 7.55 -39.29 -0.30 5.80 16 31 H 0.35 6.07 8.58 -39.29 -0.34 5.74 16 32 H 0.11 1.34 4.87 -51.93 -0.25 1.09 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.35 3.10 8.39 -39.29 -0.33 2.77 16 39 H 0.34 2.23 9.08 -39.29 -0.36 1.87 16 40 H 0.10 1.31 7.08 -51.93 -0.37 0.94 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 328.28 15.07 4.95 4.95 Total: -1.00 -31.30 328.28 -7.41 -38.72 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -6.36 Total: 12.73 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.79 Total: -1.07 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.07 Total: -56.03 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.26 Total: -15.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.30 -7.41 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326058342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.731 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds