Wall clock time and date at job start Mon Mar 30 2020 01:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00095 * 2 1 4 4 H 1.48502 * 109.46865 * 270.00081 * 3 2 1 5 5 H 1.48500 * 109.47090 * 29.99932 * 3 2 1 6 6 H 1.48496 * 109.47240 * 149.99844 * 3 2 1 7 7 C 1.37883 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00470 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99240 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46833 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47415 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46620 * 305.00224 * 11 10 9 13 13 N 1.46900 * 109.47027 * 64.99689 * 11 10 9 14 14 C 1.50694 * 109.47312 * 184.99614 * 11 10 9 15 15 O 1.21279 * 120.00393 * 260.00033 * 14 11 10 16 16 N 1.34781 * 119.99725 * 80.00325 * 14 11 10 17 17 C 1.47148 * 120.98255 * 0.02562 * 16 14 11 18 18 C 1.53304 * 108.38548 * 230.51772 * 17 16 14 19 19 O 1.42962 * 109.26322 * 307.72197 * 18 17 16 20 20 C 1.42965 * 114.17053 * 62.49431 * 19 18 17 21 21 H 1.09007 * 109.50701 * 57.45546 * 20 19 18 22 22 C 1.52997 * 109.51258 * 177.55257 * 20 19 18 23 23 N 1.46899 * 109.47254 * 299.90162 * 22 20 19 24 24 C 1.47153 * 120.98017 * 180.02562 * 16 14 11 25 25 H 0.96996 * 119.99638 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47483 * 60.00117 * 9 7 2 27 27 H 1.09004 * 109.47527 * 299.99732 * 9 7 2 28 28 H 1.09000 * 109.47442 * 59.99607 * 10 9 7 29 29 H 1.08999 * 109.46969 * 299.99683 * 10 9 7 30 30 H 1.00901 * 110.99767 * 296.05018 * 13 11 10 31 31 H 1.00900 * 111.00105 * 60.00356 * 13 11 10 32 32 H 1.09001 * 109.68113 * 350.23737 * 17 16 14 33 33 H 1.09002 * 109.68404 * 110.75858 * 17 16 14 34 34 H 1.09000 * 109.51224 * 67.62241 * 18 17 16 35 35 H 1.08993 * 109.51190 * 187.72476 * 18 17 16 36 36 H 1.09002 * 109.47153 * 179.90159 * 22 20 19 37 37 H 1.09001 * 109.46832 * 59.90350 * 22 20 19 38 38 H 1.00908 * 110.99847 * 56.04959 * 23 22 20 39 39 H 1.00900 * 111.00464 * 179.97438 * 23 22 20 40 40 H 1.08994 * 109.68223 * 9.76007 * 24 16 14 41 41 H 1.09002 * 109.67766 * 249.20505 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0025 12 1 0.7879 -5.0064 0.8440 13 7 0.7292 -5.1194 -1.2530 14 6 2.4550 -6.1297 0.1275 15 8 2.7872 -6.7540 -0.8578 16 7 2.9573 -6.4579 1.3343 17 6 2.5687 -5.7156 2.5439 18 6 3.8436 -5.3036 3.2889 19 8 4.6666 -6.4554 3.4880 20 6 5.1199 -7.0672 2.2780 21 1 5.6691 -6.3365 1.6842 22 6 6.0362 -8.2457 2.6133 23 7 7.1936 -7.7638 3.3788 24 6 3.9107 -7.5692 1.4812 25 1 -0.4849 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8714 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 0.0244 -4.4014 -1.3300 31 1 1.3493 -5.1043 -2.0488 32 1 2.0039 -4.8266 2.2634 33 1 1.9578 -6.3517 3.1846 34 1 4.3875 -4.5658 2.6992 35 1 3.5780 -4.8737 4.2547 36 1 6.3799 -8.7127 1.6903 37 1 5.4863 -8.9759 3.2071 38 1 6.8986 -7.2698 4.2078 39 1 7.8143 -8.5240 3.6130 40 1 4.2345 -7.9075 0.4970 41 1 3.4356 -8.3923 2.0150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326058342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:51 Heat of formation + Delta-G solvation = -113.114422 kcal Electronic energy + Delta-G solvation = -21776.366015 eV Core-core repulsion = 18496.594025 eV Total energy + Delta-G solvation = -3279.771990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62405 -39.71532 -37.19767 -36.14747 -35.44195 -34.85684 -32.12180 -31.71786 -29.49731 -28.23963 -26.45253 -25.00698 -24.07589 -22.36753 -22.01288 -20.12952 -19.00062 -18.30360 -17.79057 -17.23528 -17.02091 -16.58758 -16.41304 -16.20319 -15.92294 -15.48494 -15.33039 -15.11120 -14.92410 -14.54571 -14.21955 -13.96722 -13.63041 -13.47142 -13.19209 -12.91748 -12.69183 -12.61730 -12.51956 -12.29961 -11.87302 -11.82965 -11.66971 -11.31722 -11.23289 -10.72519 -10.56159 -9.75272 -9.65937 -9.58287 -8.21674 -6.31819 1.39737 1.40640 1.47197 1.51334 1.73463 2.39793 2.64892 3.12337 3.33386 3.44419 3.68967 3.85485 3.91404 3.98995 4.01600 4.06973 4.16199 4.24548 4.33900 4.41868 4.56317 4.60468 4.66930 4.74507 4.79900 4.87690 4.93975 5.05609 5.30742 5.45724 5.63094 5.79557 5.98304 6.04544 6.19321 6.20484 6.24083 6.43600 6.60546 6.83042 7.02700 7.37462 8.88988 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.004585 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.279714 B = 6105.038885 C = 6977.082839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.032 3.968 10 C -0.121 4.121 11 C 0.082 3.918 12 H 0.110 0.890 13 N -0.830 5.830 14 C 0.528 3.472 15 O -0.569 6.569 16 N -0.614 5.614 17 C 0.065 3.935 18 C 0.051 3.949 19 O -0.379 6.379 20 C 0.083 3.917 21 H 0.050 0.950 22 C 0.078 3.922 23 N -0.857 5.857 24 C 0.085 3.915 25 H 0.264 0.736 26 H 0.002 0.998 27 H 0.006 0.994 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.354 0.646 31 H 0.344 0.656 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.350 0.650 39 H 0.354 0.646 40 H 0.089 0.911 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.568 -14.881 9.331 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.160 4.160 11 C -0.033 4.033 12 H 0.128 0.872 13 N -0.362 5.362 14 C 0.317 3.683 15 O -0.447 6.447 16 N -0.348 5.348 17 C -0.058 4.058 18 C -0.026 4.026 19 O -0.298 6.298 20 C 0.024 3.976 21 H 0.068 0.932 22 C -0.054 4.054 23 N -0.389 5.389 24 C -0.038 4.038 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.024 0.976 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.152 0.848 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.107 0.893 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.573 -15.467 8.624 19.675 hybrid contribution 0.057 1.581 0.016 1.582 sum 8.631 -13.887 8.641 18.493 Atomic orbital electron populations 1.70050 1.07423 1.27768 1.51256 1.25813 0.95677 1.02795 0.94712 0.85582 0.78823 0.79170 0.78300 1.20273 1.20609 1.18988 1.21577 0.93258 0.92386 1.50969 0.92855 1.18950 0.93885 0.91740 0.95903 1.22169 0.98863 0.93698 1.01308 1.21420 0.94724 0.91237 0.95961 0.87208 1.58764 1.18409 1.55722 1.03260 1.20836 0.80961 0.84199 0.82349 1.90607 1.61498 1.54744 1.37897 1.48141 1.45277 1.34097 1.07282 1.22746 0.98726 0.98225 0.86054 1.23054 0.89726 0.87251 1.02603 1.87862 1.68213 1.44072 1.29663 1.22491 0.92998 0.95848 0.86246 0.93215 1.21689 0.90493 0.93417 0.99769 1.58622 1.18553 1.32374 1.29388 1.22282 0.90067 0.89359 1.02107 0.92706 0.97959 0.97577 0.91612 0.93936 0.83056 0.84322 0.88208 0.88337 0.93568 0.84791 0.88749 0.93298 0.83713 0.83224 0.89278 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.33 13.29 21.45 0.28 -53.04 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -29.32 9.11 25.60 0.23 -29.08 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.03 1.55 4.74 29.85 0.14 1.69 16 10 C -0.12 -4.66 4.45 30.60 0.14 -4.52 16 11 C 0.08 2.76 2.35 44.17 0.10 2.86 16 12 H 0.11 3.43 6.88 -2.39 -0.02 3.41 16 13 N -0.83 -28.83 8.94 -171.81 -1.54 -30.36 16 14 C 0.53 17.74 6.96 87.65 0.61 18.35 16 15 O -0.57 -22.53 15.72 -3.03 -0.05 -22.57 16 16 N -0.61 -16.42 3.02 -817.40 -2.47 -18.89 16 17 C 0.06 1.41 6.01 86.36 0.52 1.93 16 18 C 0.05 1.03 6.98 72.08 0.50 1.54 16 19 O -0.38 -7.99 9.73 -148.98 -1.45 -9.44 16 20 C 0.08 1.75 3.05 30.68 0.09 1.85 16 21 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 22 C 0.08 1.24 6.52 86.30 0.56 1.80 16 23 N -0.86 -13.48 9.62 -186.72 -1.80 -15.28 16 24 C 0.08 1.94 5.93 86.34 0.51 2.45 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 27 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 28 H 0.07 2.39 6.92 -2.39 -0.02 2.38 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.35 12.31 7.55 -89.69 -0.68 11.63 16 31 H 0.34 12.22 8.58 -89.69 -0.77 11.46 16 32 H 0.10 2.35 4.87 -2.39 -0.01 2.34 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.35 5.55 8.39 -89.69 -0.75 4.80 16 39 H 0.35 3.93 9.08 -89.69 -0.81 3.11 16 40 H 0.09 2.27 7.08 -2.39 -0.02 2.25 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -65.96 328.28 -3.05 -69.01 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -1.94 Total: 35.94 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 3.88 Total: -0.19 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -5.52 Total: -117.58 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.50 Total: -32.01 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -65.96 -3.05 -69.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326058342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.106 kcal (2) G-P(sol) polarization free energy of solvation -65.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds