Wall clock time and date at job start Mon Mar 30 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00250 * 2 1 4 4 H 1.48493 * 109.47476 * 239.99979 * 3 2 1 5 5 H 1.48497 * 109.46920 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47315 * 119.99527 * 3 2 1 7 7 C 1.37885 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99657 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46771 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47222 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47025 * 305.00355 * 11 10 9 13 13 N 1.46900 * 109.46776 * 64.99851 * 11 10 9 14 14 C 1.50697 * 109.47400 * 185.00295 * 11 10 9 15 15 O 1.21281 * 119.99651 * 260.00506 * 14 11 10 16 16 N 1.34772 * 119.99915 * 80.00022 * 14 11 10 17 17 C 1.46509 * 119.99923 * 180.02562 * 16 14 11 18 18 C 1.52997 * 109.46869 * 179.97438 * 17 16 14 19 19 H 1.09008 * 109.54240 * 59.89177 * 18 17 16 20 20 C 1.53103 * 109.50360 * 179.97438 * 18 17 16 21 21 N 1.47016 * 109.29298 * 176.80966 * 20 18 17 22 22 C 1.47015 * 110.75076 * 301.35892 * 21 20 18 23 23 C 1.53103 * 109.25538 * 58.61911 * 22 21 20 24 24 O 1.43016 * 109.25809 * 303.14858 * 23 22 21 25 25 H 0.97000 * 120.00083 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47238 * 60.00141 * 9 7 2 27 27 H 1.08999 * 109.47574 * 300.00194 * 9 7 2 28 28 H 1.09001 * 109.46844 * 60.00623 * 10 9 7 29 29 H 1.08990 * 109.47265 * 300.00266 * 10 9 7 30 30 H 1.00901 * 110.99963 * 60.00838 * 13 11 10 31 31 H 1.00903 * 110.99751 * 183.95388 * 13 11 10 32 32 H 0.97000 * 120.00426 * 0.02562 * 16 14 11 33 33 H 1.08996 * 109.47012 * 60.00014 * 17 16 14 34 34 H 1.08994 * 109.46643 * 299.99732 * 17 16 14 35 35 H 1.09002 * 109.50635 * 56.85057 * 20 18 17 36 36 H 1.09003 * 109.50698 * 296.76669 * 20 18 17 37 37 H 1.00891 * 111.00352 * 65.13901 * 21 20 18 38 38 H 1.08998 * 109.50639 * 178.55250 * 22 21 20 39 39 H 1.08997 * 109.50950 * 298.64630 * 22 21 20 40 40 H 1.08998 * 109.50794 * 63.08655 * 23 22 21 41 41 H 1.08997 * 109.50658 * 183.21248 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9872 -0.0025 12 1 0.7885 -5.0077 0.8396 13 7 0.7280 -5.1176 -1.2575 14 6 2.4549 -6.1300 0.1202 15 8 2.7863 -6.7527 -0.8664 16 7 2.9582 -6.4599 1.3261 17 6 3.9062 -7.5706 1.4452 18 6 4.3198 -7.7332 2.9092 19 1 3.4383 -7.9398 3.5164 20 6 5.3100 -8.8941 3.0347 21 7 5.7628 -8.9976 4.4296 22 6 6.3979 -7.7454 4.8653 23 6 5.3972 -6.5954 4.7223 24 8 4.9445 -6.5299 3.3672 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8725 -3.6048 0.8878 29 1 2.8712 -3.6039 -0.8921 30 1 1.3475 -5.1013 -2.0537 31 1 0.1636 -5.9540 -1.2555 32 1 2.6929 -5.9620 2.1151 33 1 4.7882 -7.3620 0.8398 34 1 3.4349 -8.4894 1.0962 35 1 6.1671 -8.7132 2.3862 36 1 4.8210 -9.8230 2.7409 37 1 4.9994 -9.2475 5.0400 38 1 6.7023 -7.8353 5.9080 39 1 7.2728 -7.5464 4.2465 40 1 4.5471 -6.7685 5.3821 41 1 5.8813 -5.6563 4.9901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327855923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:37 Heat of formation + Delta-G solvation = -93.996470 kcal Electronic energy + Delta-G solvation = -21025.267739 eV Core-core repulsion = 17746.324766 eV Total energy + Delta-G solvation = -3278.942973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.26937 -39.44636 -35.47940 -35.02125 -34.68891 -32.77062 -31.89859 -30.06508 -28.14522 -26.36087 -25.14848 -23.64921 -22.56051 -21.54598 -20.58601 -19.72366 -17.30847 -16.94911 -16.78939 -16.40704 -16.08243 -15.67274 -15.36734 -15.10153 -14.70565 -14.59927 -14.33344 -13.67560 -13.36720 -13.18823 -12.80977 -12.53974 -12.28001 -11.98470 -11.81866 -11.71752 -11.51686 -11.50245 -10.85586 -10.65010 -10.55069 -10.53082 -10.12081 -9.76272 -9.34307 -9.05842 -8.97650 -8.77203 -8.31856 -8.17306 -5.91453 -3.93391 2.79981 3.17452 3.33116 3.37865 3.42079 3.44949 3.69182 4.32134 4.44496 4.52197 4.54204 4.66057 4.75469 4.89981 4.94639 5.01170 5.16084 5.26023 5.41380 5.42978 5.43944 5.50356 5.56712 5.67421 5.87662 6.31518 6.41428 6.50094 6.69862 6.73645 6.76320 7.12698 7.40377 7.62774 7.78643 7.82630 7.99017 8.15819 8.34167 8.51430 9.14430 9.69468 11.19482 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.003824 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.294452 B = 7319.794805 C = 8491.519394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.097 0.903 13 N -0.807 5.807 14 C 0.483 3.517 15 O -0.557 6.557 16 N -0.725 5.725 17 C 0.131 3.869 18 C 0.040 3.960 19 H 0.065 0.935 20 C 0.029 3.971 21 N -0.681 5.681 22 C 0.018 3.982 23 C 0.021 3.979 24 O -0.369 6.369 25 H 0.260 0.740 26 H 0.035 0.965 27 H 0.012 0.988 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.348 0.652 31 H 0.333 0.667 32 H 0.406 0.594 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.341 0.659 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.576 -18.707 10.547 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.115 0.885 13 N -0.335 5.335 14 C 0.269 3.731 15 O -0.435 6.435 16 N -0.378 5.378 17 C 0.006 3.994 18 C -0.020 4.020 19 H 0.083 0.917 20 C -0.101 4.101 21 N -0.310 5.310 22 C -0.111 4.111 23 C -0.057 4.057 24 O -0.287 6.287 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.240 0.760 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.159 0.841 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.938 -18.500 9.757 22.746 hybrid contribution 0.174 0.648 0.663 0.943 sum 9.112 -17.853 10.420 22.591 Atomic orbital electron populations 1.69965 1.05947 1.26492 1.50872 1.24990 0.94806 0.99031 0.95502 0.86707 0.79602 0.83412 0.78536 1.20313 1.21345 1.20379 1.21257 0.92891 0.91349 1.50567 0.93027 1.19011 0.93553 0.89834 0.98147 1.21656 0.98829 0.92107 1.00756 1.21824 0.93506 0.93320 0.95021 0.88523 1.59009 1.26935 1.44209 1.03305 1.22761 0.82257 0.85670 0.82419 1.90640 1.61397 1.54397 1.37041 1.46040 1.46226 1.34865 1.10637 1.21247 0.93681 0.91001 0.93519 1.23117 0.95522 0.87411 0.95929 0.91732 1.22627 0.98751 0.97743 0.91017 1.60867 1.34509 1.32334 1.03255 1.22712 0.98008 0.88114 1.02303 1.23315 0.97465 1.01197 0.83722 1.88189 1.77823 1.34654 1.28059 0.93069 0.94685 0.96921 0.92731 0.92881 0.83825 0.85528 0.75955 0.90796 0.90210 0.89370 0.89193 0.84111 0.89444 0.89663 0.93038 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 10 C -0.10 -1.98 4.78 -26.73 -0.13 -2.11 16 11 C 0.08 1.36 3.15 -68.86 -0.22 1.14 16 12 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 13 N -0.81 -13.89 8.44 -5.65 -0.05 -13.94 16 14 C 0.48 7.81 7.07 -10.99 -0.08 7.73 16 15 O -0.56 -10.43 16.25 5.56 0.09 -10.34 16 16 N -0.72 -9.44 5.45 -60.30 -0.33 -9.77 16 17 C 0.13 1.43 5.37 -4.04 -0.02 1.41 16 18 C 0.04 0.35 2.89 -26.68 -0.08 0.27 16 19 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 20 C 0.03 0.21 6.04 -3.71 -0.02 0.19 16 21 N -0.68 -4.77 6.93 -113.49 -0.79 -5.56 16 22 C 0.02 0.12 6.76 -3.71 -0.03 0.10 16 23 C 0.02 0.17 7.01 37.21 0.26 0.43 16 24 O -0.37 -3.96 10.24 -35.23 -0.36 -4.32 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.35 6.09 8.58 -39.29 -0.34 5.76 16 31 H 0.33 4.94 9.06 -39.29 -0.36 4.59 16 32 H 0.41 4.83 8.36 -40.82 -0.34 4.49 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.34 1.91 8.89 -39.30 -0.35 1.56 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -33.71 338.49 -8.29 -42.01 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -6.82 Total: 10.19 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.85 Total: -3.88 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.43 Total: -55.73 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.27 Total: -14.66 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.71 -8.29 -42.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327855923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.991 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds