Wall clock time and date at job start Mon Mar 30 2020 01:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99962 * 2 1 4 4 H 1.48494 * 109.46885 * 269.99911 * 3 2 1 5 5 H 1.48505 * 109.47250 * 30.00016 * 3 2 1 6 6 H 1.48498 * 109.47019 * 149.99827 * 3 2 1 7 7 C 1.37872 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00129 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00437 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47371 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47044 * 54.99871 * 11 10 9 13 13 N 1.46901 * 109.46993 * 295.00420 * 11 10 9 14 14 C 1.50694 * 109.47362 * 175.00091 * 11 10 9 15 15 O 1.21278 * 120.00328 * 100.00090 * 14 11 10 16 16 N 1.34783 * 119.99891 * 279.99877 * 14 11 10 17 17 C 1.46498 * 119.99856 * 179.97438 * 16 14 11 18 18 C 1.53001 * 109.46967 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.50541 * 305.08496 * 18 17 16 20 20 C 1.53100 * 109.50418 * 185.00383 * 18 17 16 21 21 N 1.47019 * 109.25618 * 183.21477 * 20 18 17 22 22 C 1.47020 * 110.75264 * 58.61322 * 21 20 18 23 23 C 1.53097 * 109.25457 * 301.38411 * 22 21 20 24 24 O 1.43010 * 109.51003 * 65.21641 * 18 17 16 25 25 H 0.96998 * 120.00196 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47030 * 60.00007 * 9 7 2 27 27 H 1.08993 * 109.46732 * 300.00033 * 9 7 2 28 28 H 1.09001 * 109.47006 * 60.00072 * 10 9 7 29 29 H 1.09005 * 109.47119 * 300.00139 * 10 9 7 30 30 H 1.00905 * 110.99785 * 176.04570 * 13 11 10 31 31 H 1.00904 * 110.99670 * 299.99507 * 13 11 10 32 32 H 0.97000 * 119.99932 * 0.02562 * 16 14 11 33 33 H 1.08994 * 109.47149 * 60.00176 * 17 16 14 34 34 H 1.09002 * 109.47303 * 299.99911 * 17 16 14 35 35 H 1.08991 * 109.51115 * 63.28183 * 20 18 17 36 36 H 1.09001 * 109.54187 * 303.16276 * 20 18 17 37 37 H 1.00901 * 110.99924 * 182.38630 * 21 20 18 38 38 H 1.08998 * 109.50492 * 61.31809 * 22 21 20 39 39 H 1.08993 * 109.50687 * 181.44928 * 22 21 20 40 40 H 1.08998 * 109.51128 * 296.91230 * 23 22 21 41 41 H 1.09008 * 109.50204 * 176.78519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 -0.0001 12 1 0.7883 -5.0068 -0.8422 13 7 0.7280 -5.1189 1.2548 14 6 2.4548 -6.1298 -0.1239 15 8 2.7863 -6.7537 0.8619 16 7 2.9581 -6.4586 -1.3303 17 6 3.9060 -7.5691 -1.4505 18 6 4.3196 -7.7302 -2.9147 19 1 3.4300 -7.8481 -3.5334 20 6 5.2113 -8.9661 -3.0610 21 7 5.6682 -9.0722 -4.4543 22 6 6.4086 -7.8663 -4.8531 23 6 5.5048 -6.6415 -4.6888 24 8 5.0454 -6.5723 -3.3363 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.1636 -5.9553 1.2520 31 1 1.3476 -5.1034 2.0511 32 1 2.6933 -5.9594 -2.1187 33 1 3.4349 -8.4882 -1.1024 34 1 4.7882 -7.3610 -0.8450 35 1 4.6439 -9.8579 -2.7951 36 1 6.0741 -8.8734 -2.4012 37 1 6.2276 -9.9011 -4.5893 38 1 7.2903 -7.7552 -4.2219 39 1 6.7151 -7.9553 -5.8952 40 1 4.6499 -6.7274 -5.3596 41 1 6.0674 -5.7392 -4.9288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327855924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:39 Heat of formation + Delta-G solvation = -93.176708 kcal Electronic energy + Delta-G solvation = -20986.095646 eV Core-core repulsion = 17707.188221 eV Total energy + Delta-G solvation = -3278.907425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11553 -39.35250 -35.46254 -35.04038 -34.69525 -32.75442 -31.82655 -30.04612 -28.20511 -26.43993 -25.24234 -23.64908 -22.54677 -21.01812 -20.48367 -19.65962 -17.53642 -16.86856 -16.77866 -16.38000 -16.05279 -15.41798 -15.21110 -14.88451 -14.69434 -14.50369 -14.32285 -14.18226 -13.64686 -13.33387 -12.85459 -12.54062 -12.27016 -11.96913 -11.86672 -11.60370 -11.48306 -10.90921 -10.86060 -10.62813 -10.51255 -10.14365 -10.03230 -9.74708 -9.32671 -9.04924 -8.98946 -8.94695 -8.31264 -8.16395 -5.90107 -3.91900 2.82488 3.19572 3.37375 3.38323 3.43600 3.47551 3.68539 4.47709 4.51184 4.53634 4.62280 4.71140 4.83145 4.94034 5.00847 5.14181 5.19805 5.26170 5.36284 5.43272 5.45432 5.57284 5.60042 5.73358 5.89897 6.32450 6.44274 6.52395 6.71954 6.74279 6.84114 7.14720 7.42603 7.65262 7.80628 7.84640 8.00856 8.17465 8.36588 8.53017 9.16149 9.70993 11.20870 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.003783 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.140433 B = 7399.291541 C = 8564.705055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.557 6.557 16 N -0.724 5.724 17 C 0.128 3.872 18 C 0.081 3.919 19 H 0.075 0.925 20 C 0.028 3.972 21 N -0.688 5.688 22 C 0.017 3.983 23 C 0.062 3.938 24 O -0.374 6.374 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.333 0.667 31 H 0.347 0.653 32 H 0.406 0.594 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.348 0.652 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.934 -19.383 -10.056 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.335 5.335 14 C 0.270 3.730 15 O -0.435 6.435 16 N -0.377 5.377 17 C 0.003 3.997 18 C 0.023 3.977 19 H 0.093 0.907 20 C -0.102 4.102 21 N -0.320 5.320 22 C -0.112 4.112 23 C -0.015 4.015 24 O -0.292 6.292 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.241 0.759 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.166 0.834 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.100 -18.637 -9.676 22.887 hybrid contribution 1.874 -0.177 -0.099 1.885 sum 10.974 -18.814 -9.775 23.873 Atomic orbital electron populations 1.69977 1.05937 1.26358 1.50994 1.24990 0.94807 0.99034 0.95541 0.86648 0.79895 0.83788 0.77966 1.20796 1.21294 1.19981 1.21294 0.92926 0.91342 1.50376 0.92981 1.19017 0.93567 0.89842 0.98168 1.21657 0.98828 0.92110 1.00766 1.21827 0.93517 0.93293 0.95041 0.88439 1.59012 1.26931 1.44213 1.03309 1.22757 0.82236 0.85671 0.82384 1.90636 1.61415 1.54363 1.37128 1.46030 1.46200 1.34794 1.10687 1.21254 0.93651 0.91029 0.93802 1.22378 0.94516 0.85418 0.95411 0.90748 1.22513 0.99212 0.99145 0.89372 1.60522 1.44575 1.05065 1.21822 1.22656 0.95713 0.91336 1.01520 1.22686 0.97541 0.97575 0.83721 1.88099 1.73252 1.39120 1.28776 0.93142 0.96885 0.94680 0.92900 0.92694 0.85518 0.83852 0.75897 0.90194 0.90923 0.89258 0.93698 0.83410 0.94058 0.89500 0.92110 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 10 C -0.10 -1.98 4.78 -26.73 -0.13 -2.11 16 11 C 0.08 1.36 3.15 -68.87 -0.22 1.15 16 12 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 13 N -0.81 -13.94 8.44 -5.66 -0.05 -13.98 16 14 C 0.48 7.86 7.07 -10.99 -0.08 7.79 16 15 O -0.56 -10.49 16.25 5.56 0.09 -10.40 16 16 N -0.72 -9.57 5.51 -60.30 -0.33 -9.90 16 17 C 0.13 1.45 5.34 -4.04 -0.02 1.43 16 18 C 0.08 0.78 2.84 -26.68 -0.08 0.71 16 19 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 20 C 0.03 0.22 6.05 -3.71 -0.02 0.19 16 21 N -0.69 -4.97 6.92 -113.49 -0.79 -5.76 16 22 C 0.02 0.12 6.76 -3.71 -0.03 0.10 16 23 C 0.06 0.53 7.01 37.21 0.26 0.79 16 24 O -0.37 -4.24 10.42 -35.23 -0.37 -4.61 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.33 4.96 9.06 -39.29 -0.36 4.61 16 31 H 0.35 6.10 8.58 -39.29 -0.34 5.77 16 32 H 0.41 4.87 8.47 -40.82 -0.35 4.52 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.35 1.85 8.90 -39.29 -0.35 1.50 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -33.84 338.78 -8.30 -42.15 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.83 Total: 9.91 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -0.85 Total: -3.01 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.43 Total: -56.13 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.28 Total: -15.01 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.84 -8.30 -42.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327855924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.031 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds