Wall clock time and date at job start Mon Mar 30 2020 01:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99962 * 2 1 4 4 H 1.48494 * 109.46885 * 269.99911 * 3 2 1 5 5 H 1.48505 * 109.47250 * 30.00016 * 3 2 1 6 6 H 1.48498 * 109.47019 * 149.99827 * 3 2 1 7 7 C 1.37872 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00129 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00437 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47371 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47044 * 54.99871 * 11 10 9 13 13 N 1.46901 * 109.46993 * 295.00420 * 11 10 9 14 14 C 1.50694 * 109.47362 * 175.00091 * 11 10 9 15 15 O 1.21278 * 120.00328 * 100.00090 * 14 11 10 16 16 N 1.34783 * 119.99891 * 279.99877 * 14 11 10 17 17 C 1.46498 * 119.99856 * 179.97438 * 16 14 11 18 18 C 1.53001 * 109.46967 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.50541 * 305.08496 * 18 17 16 20 20 C 1.53100 * 109.50418 * 185.00383 * 18 17 16 21 21 N 1.47019 * 109.25618 * 183.21477 * 20 18 17 22 22 C 1.47020 * 110.75264 * 58.61322 * 21 20 18 23 23 C 1.53097 * 109.25457 * 301.38411 * 22 21 20 24 24 O 1.43010 * 109.51003 * 65.21641 * 18 17 16 25 25 H 0.96998 * 120.00196 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47030 * 60.00007 * 9 7 2 27 27 H 1.08993 * 109.46732 * 300.00033 * 9 7 2 28 28 H 1.09001 * 109.47006 * 60.00072 * 10 9 7 29 29 H 1.09005 * 109.47119 * 300.00139 * 10 9 7 30 30 H 1.00905 * 110.99785 * 176.04570 * 13 11 10 31 31 H 1.00904 * 110.99670 * 299.99507 * 13 11 10 32 32 H 0.97000 * 119.99932 * 0.02562 * 16 14 11 33 33 H 1.08994 * 109.47149 * 60.00176 * 17 16 14 34 34 H 1.09002 * 109.47303 * 299.99911 * 17 16 14 35 35 H 1.08991 * 109.51115 * 63.28183 * 20 18 17 36 36 H 1.09001 * 109.54187 * 303.16276 * 20 18 17 37 37 H 1.00901 * 110.99924 * 182.38630 * 21 20 18 38 38 H 1.08998 * 109.50492 * 61.31809 * 22 21 20 39 39 H 1.08993 * 109.50687 * 181.44928 * 22 21 20 40 40 H 1.08998 * 109.51128 * 296.91230 * 23 22 21 41 41 H 1.09008 * 109.50204 * 176.78519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 -0.0001 12 1 0.7883 -5.0068 -0.8422 13 7 0.7280 -5.1189 1.2548 14 6 2.4548 -6.1298 -0.1239 15 8 2.7863 -6.7537 0.8619 16 7 2.9581 -6.4586 -1.3303 17 6 3.9060 -7.5691 -1.4505 18 6 4.3196 -7.7302 -2.9147 19 1 3.4300 -7.8481 -3.5334 20 6 5.2113 -8.9661 -3.0610 21 7 5.6682 -9.0722 -4.4543 22 6 6.4086 -7.8663 -4.8531 23 6 5.5048 -6.6415 -4.6888 24 8 5.0454 -6.5723 -3.3363 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.1636 -5.9553 1.2520 31 1 1.3476 -5.1034 2.0511 32 1 2.6933 -5.9594 -2.1187 33 1 3.4349 -8.4882 -1.1024 34 1 4.7882 -7.3610 -0.8450 35 1 4.6439 -9.8579 -2.7951 36 1 6.0741 -8.8734 -2.4012 37 1 6.2276 -9.9011 -4.5893 38 1 7.2903 -7.7552 -4.2219 39 1 6.7151 -7.9553 -5.8952 40 1 4.6499 -6.7274 -5.3596 41 1 6.0674 -5.7392 -4.9288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327855924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:39 Heat of formation + Delta-G solvation = -122.545243 kcal Electronic energy + Delta-G solvation = -20987.369161 eV Core-core repulsion = 17707.188221 eV Total energy + Delta-G solvation = -3280.180941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17394 -40.32103 -36.88956 -36.14628 -35.53170 -34.80096 -32.65618 -31.91288 -29.13657 -27.92493 -26.33757 -25.02661 -23.57418 -22.31186 -21.68845 -20.93567 -18.77403 -18.13821 -17.80027 -17.59603 -17.32178 -16.85385 -16.45078 -15.88054 -15.79016 -15.69190 -15.38957 -15.07490 -14.86740 -14.55132 -14.26054 -13.95230 -13.72211 -13.42799 -13.22431 -12.78735 -12.51724 -12.44447 -12.31280 -12.24953 -11.76983 -11.65751 -11.59251 -11.25147 -10.99808 -10.77575 -10.48000 -10.17594 -9.62607 -9.56553 -8.12955 -6.23158 1.41952 1.43613 1.50174 1.54769 2.12503 2.45512 2.64635 3.09172 3.19847 3.58661 3.76271 3.77015 3.92283 4.01504 4.03513 4.11798 4.23408 4.33014 4.39588 4.45540 4.57090 4.63864 4.79438 4.80367 4.91322 4.95193 4.96713 5.25971 5.35067 5.57994 5.75489 5.85499 5.99641 6.10223 6.13827 6.29785 6.31793 6.43713 6.55265 6.95181 7.12278 7.44754 8.98300 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.003783 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.140433 B = 7399.291541 C = 8564.705055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.081 4.081 11 C 0.086 3.914 12 H 0.111 0.889 13 N -0.818 5.818 14 C 0.489 3.511 15 O -0.583 6.583 16 N -0.712 5.712 17 C 0.128 3.872 18 C 0.086 3.914 19 H 0.080 0.920 20 C 0.031 3.969 21 N -0.691 5.691 22 C 0.020 3.980 23 C 0.055 3.945 24 O -0.401 6.401 25 H 0.262 0.738 26 H -0.005 1.005 27 H 0.007 0.993 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.347 0.653 31 H 0.345 0.655 32 H 0.413 0.587 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.039 0.961 37 H 0.360 0.640 38 H 0.036 0.964 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.033 -19.978 -11.239 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.120 4.120 11 C -0.030 4.030 12 H 0.129 0.871 13 N -0.347 5.347 14 C 0.275 3.725 15 O -0.464 6.464 16 N -0.363 5.363 17 C 0.004 3.996 18 C 0.028 3.972 19 H 0.098 0.902 20 C -0.099 4.099 21 N -0.324 5.324 22 C -0.109 4.109 23 C -0.022 4.022 24 O -0.321 6.321 25 H 0.071 0.929 26 H 0.013 0.987 27 H 0.025 0.975 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.250 0.750 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.058 0.942 37 H 0.180 0.820 38 H 0.054 0.946 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.215 -19.262 -10.902 24.376 hybrid contribution 1.519 -0.010 0.233 1.537 sum 11.734 -19.272 -10.669 24.958 Atomic orbital electron populations 1.70104 1.07595 1.27520 1.51738 1.25900 0.95727 1.03016 0.94966 0.85526 0.78589 0.78897 0.78489 1.19603 1.20835 1.19206 1.21733 0.93308 0.92819 1.50401 0.92795 1.18825 0.93843 0.91258 0.95813 1.21379 0.97724 0.92287 1.00598 1.21618 0.93731 0.91986 0.95632 0.87108 1.58980 1.27200 1.45327 1.03205 1.22349 0.82015 0.85284 0.82889 1.90629 1.62276 1.55291 1.38166 1.45953 1.45529 1.34928 1.09936 1.21366 0.92580 0.90578 0.95081 1.22345 0.95051 0.85860 0.93984 0.90207 1.22470 0.98896 0.98796 0.89780 1.60517 1.45008 1.05655 1.21231 1.22645 0.95034 0.90711 1.02559 1.22862 0.98006 0.98775 0.82516 1.88053 1.73654 1.40083 1.30264 0.92905 0.98693 0.97479 0.94065 0.91774 0.83933 0.84156 0.75044 0.88962 0.92484 0.87640 0.94250 0.82027 0.94570 0.87608 0.91912 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 9 C 0.04 2.11 4.86 29.85 0.15 2.26 16 10 C -0.08 -3.40 4.78 30.59 0.15 -3.26 16 11 C 0.09 2.93 3.15 44.17 0.14 3.07 16 12 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 13 N -0.82 -28.22 8.44 -171.81 -1.45 -29.67 16 14 C 0.49 15.49 7.07 87.65 0.62 16.11 16 15 O -0.58 -21.58 16.25 -3.02 -0.05 -21.63 16 16 N -0.71 -17.93 5.51 -463.07 -2.55 -20.48 16 17 C 0.13 2.76 5.34 86.38 0.46 3.22 16 18 C 0.09 1.52 2.84 30.63 0.09 1.61 16 19 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 20 C 0.03 0.42 6.05 86.31 0.52 0.95 16 21 N -0.69 -8.47 6.92 -512.98 -3.55 -12.02 16 22 C 0.02 0.25 6.76 86.31 0.58 0.83 16 23 C 0.05 0.86 7.01 72.01 0.50 1.37 16 24 O -0.40 -8.65 10.42 -148.98 -1.55 -10.20 16 25 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 26 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.01 0.40 7.75 -2.39 -0.02 0.38 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.35 10.17 9.06 -89.69 -0.81 9.35 16 31 H 0.34 12.21 8.58 -89.69 -0.77 11.44 16 32 H 0.41 9.32 8.47 -92.71 -0.79 8.53 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.36 2.98 8.90 -89.69 -0.80 2.18 16 38 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -71.99 338.78 -5.05 -77.04 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -2.11 Total: 31.44 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 3.90 Total: -4.60 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -7.27 Total: -119.11 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.60 Total: -31.83 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.99 -5.05 -77.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327855924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.506 kcal (2) G-P(sol) polarization free energy of solvation -71.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds