Wall clock time and date at job start Mon Mar 30 2020 01:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99798 * 2 1 4 4 H 1.48502 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47357 * 299.99607 * 3 2 1 6 6 H 1.48503 * 109.47323 * 59.99712 * 3 2 1 7 7 C 1.37875 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47270 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46965 * 54.99686 * 11 10 9 13 13 N 1.46897 * 109.46938 * 295.00393 * 11 10 9 14 14 C 1.50697 * 109.47138 * 175.00084 * 11 10 9 15 15 O 1.21281 * 119.99651 * 100.00470 * 14 11 10 16 16 N 1.34772 * 119.99915 * 279.99986 * 14 11 10 17 17 C 1.46509 * 119.99923 * 180.02562 * 16 14 11 18 18 C 1.52997 * 109.46869 * 179.97438 * 17 16 14 19 19 H 1.09008 * 109.54240 * 59.89177 * 18 17 16 20 20 C 1.53103 * 109.50360 * 179.97438 * 18 17 16 21 21 N 1.47016 * 109.29298 * 176.80966 * 20 18 17 22 22 C 1.47015 * 110.75076 * 301.35892 * 21 20 18 23 23 C 1.53103 * 109.25538 * 58.61911 * 22 21 20 24 24 O 1.43016 * 109.25809 * 303.14858 * 23 22 21 25 25 H 0.97001 * 120.00532 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46546 * 60.00305 * 9 7 2 27 27 H 1.09000 * 109.47542 * 300.00349 * 9 7 2 28 28 H 1.08993 * 109.46834 * 60.00199 * 10 9 7 29 29 H 1.09000 * 109.47171 * 300.00570 * 10 9 7 30 30 H 1.00904 * 110.99712 * 299.99662 * 13 11 10 31 31 H 1.00900 * 111.00718 * 63.95184 * 13 11 10 32 32 H 0.97000 * 120.00426 * 0.02562 * 16 14 11 33 33 H 1.08996 * 109.47012 * 60.00014 * 17 16 14 34 34 H 1.08994 * 109.46643 * 299.99732 * 17 16 14 35 35 H 1.09002 * 109.50635 * 56.85057 * 20 18 17 36 36 H 1.09003 * 109.50698 * 296.76669 * 20 18 17 37 37 H 1.00891 * 111.00352 * 65.13901 * 21 20 18 38 38 H 1.08998 * 109.50639 * 178.55250 * 22 21 20 39 39 H 1.08997 * 109.50950 * 298.64630 * 22 21 20 40 40 H 1.08998 * 109.50794 * 63.08655 * 23 22 21 41 41 H 1.08997 * 109.50658 * 183.21248 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 1 0.7885 -5.0075 -0.8388 13 7 0.7282 -5.1177 1.2583 14 6 2.4551 -6.1298 -0.1195 15 8 2.7865 -6.7528 0.8669 16 7 2.9584 -6.4596 -1.3254 17 6 3.9055 -7.5709 -1.4449 18 6 4.3183 -7.7340 -2.9091 19 1 4.7886 -6.8152 -3.2598 20 6 5.3087 -8.8948 -3.0348 21 7 5.6433 -9.0965 -4.4520 22 6 4.4334 -9.3801 -5.2376 23 6 3.4515 -8.2146 -5.0909 24 8 3.1622 -8.0132 -3.7048 25 1 -0.4851 0.8400 -0.0004 26 1 0.6241 -2.5574 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 2.8719 -3.6035 0.8926 29 1 2.8721 -3.6050 -0.8872 30 1 1.3478 -5.1015 2.0545 31 1 0.0234 -4.3997 1.3339 32 1 2.6936 -5.9612 -2.1143 33 1 3.4336 -8.4895 -1.0964 34 1 4.7876 -7.3631 -0.8393 35 1 4.8578 -9.8028 -2.6343 36 1 6.2153 -8.6618 -2.4763 37 1 6.1374 -8.2994 -4.8240 38 1 4.7010 -9.5005 -6.2874 39 1 3.9690 -10.2962 -4.8729 40 1 3.8960 -7.3097 -5.5051 41 1 2.5300 -8.4456 -5.6252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327855926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:44 Heat of formation + Delta-G solvation = -95.344839 kcal Electronic energy + Delta-G solvation = -20958.007969 eV Core-core repulsion = 17679.006526 eV Total energy + Delta-G solvation = -3279.001443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.21917 -39.31502 -35.64213 -35.05467 -34.64103 -32.84965 -31.85747 -29.87830 -28.16721 -26.44422 -25.13419 -23.79265 -22.61884 -21.51215 -20.66620 -19.70819 -17.41717 -16.92802 -16.82772 -16.32619 -16.12237 -15.55909 -15.21324 -14.95016 -14.56179 -14.45832 -14.30399 -13.73607 -13.37130 -13.01387 -12.96262 -12.74800 -12.41756 -12.12059 -11.79254 -11.71650 -11.63492 -11.50100 -11.09044 -10.93739 -10.67215 -10.51791 -9.99256 -9.92065 -9.29415 -9.20490 -8.95876 -8.71495 -8.45066 -8.15797 -6.09293 -4.12430 2.96836 3.18695 3.25165 3.33174 3.34451 3.37089 3.71688 4.33662 4.38698 4.48178 4.58475 4.68713 4.77172 4.91858 5.04705 5.14578 5.21003 5.25622 5.27100 5.44531 5.48902 5.51751 5.62133 5.72132 5.78746 6.29413 6.34121 6.50134 6.53632 6.74178 6.78641 6.87845 7.46013 7.52348 7.61899 7.74027 7.87978 7.93604 8.30635 8.50046 8.93830 9.52494 11.01641 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.003483 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.911359 B = 8036.141405 C = 8720.960708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.541 6.541 16 N -0.729 5.729 17 C 0.134 3.866 18 C 0.040 3.960 19 H 0.067 0.933 20 C 0.029 3.971 21 N -0.682 5.682 22 C 0.019 3.981 23 C 0.021 3.979 24 O -0.371 6.371 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.345 0.655 31 H 0.354 0.646 32 H 0.404 0.596 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.342 0.658 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.649 -16.567 -10.436 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.417 6.417 16 N -0.383 5.383 17 C 0.010 3.990 18 C -0.020 4.020 19 H 0.085 0.915 20 C -0.101 4.101 21 N -0.310 5.310 22 C -0.111 4.111 23 C -0.057 4.057 24 O -0.289 6.289 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.239 0.761 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.160 0.840 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.502 -18.326 -9.837 22.470 hybrid contribution 0.512 3.120 -0.474 3.197 sum 9.014 -15.206 -10.311 20.464 Atomic orbital electron populations 1.69958 1.06015 1.26671 1.50526 1.25017 0.94873 0.99317 0.95154 0.86530 0.80087 0.83696 0.77659 1.19774 1.20950 1.20935 1.21222 0.93047 0.90907 1.50978 0.92683 1.19112 0.93743 0.91117 0.97390 1.22374 0.99856 0.94023 1.01398 1.21461 0.94686 0.92256 0.95602 0.88583 1.58733 1.18450 1.55891 1.03181 1.20887 0.81019 0.84461 0.82366 1.90628 1.60326 1.53637 1.37118 1.45859 1.47164 1.34954 1.10291 1.21212 0.93860 0.91169 0.92806 1.23138 0.88421 0.98293 0.92148 0.91541 1.22627 0.98937 0.98320 0.90243 1.60867 1.22726 1.45020 1.02392 1.22702 0.90349 0.98863 0.99189 1.23308 1.01314 0.97935 0.83173 1.88152 1.30641 1.91732 1.18421 0.92929 0.96311 0.96364 0.92689 0.92648 0.84171 0.83076 0.76126 0.90797 0.90079 0.89388 0.89077 0.84018 0.89499 0.89731 0.92986 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 11 C 0.08 1.32 3.21 -68.87 -0.22 1.09 16 12 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 13 N -0.83 -14.75 8.94 -5.65 -0.05 -14.80 16 14 C 0.53 8.98 7.08 -10.99 -0.08 8.90 16 15 O -0.54 -10.79 16.25 5.56 0.09 -10.70 16 16 N -0.73 -9.88 5.45 -60.30 -0.33 -10.21 16 17 C 0.13 1.52 5.37 -4.04 -0.02 1.50 16 18 C 0.04 0.36 2.89 -26.68 -0.08 0.28 16 19 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 20 C 0.03 0.22 6.04 -3.71 -0.02 0.20 16 21 N -0.68 -4.86 6.93 -113.49 -0.79 -5.64 16 22 C 0.02 0.12 6.76 -3.71 -0.03 0.10 16 23 C 0.02 0.16 7.01 37.21 0.26 0.42 16 24 O -0.37 -3.81 10.24 -35.23 -0.36 -4.17 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.35 6.18 8.58 -39.29 -0.34 5.84 16 31 H 0.35 6.26 7.55 -39.29 -0.30 5.97 16 32 H 0.40 4.97 8.36 -40.82 -0.34 4.63 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.34 2.03 8.89 -39.30 -0.35 1.68 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -32.31 336.54 -8.22 -40.54 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.72 Total: 12.11 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.86 Total: -3.09 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.43 Total: -55.99 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.27 Total: -14.87 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.31 -8.22 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327855926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.809 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds