Wall clock time and date at job start Mon Mar 30 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99869 * 2 1 4 4 H 1.48504 * 109.46914 * 240.00540 * 3 2 1 5 5 H 1.48507 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47198 * 120.00445 * 3 2 1 7 7 C 1.37870 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00306 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47456 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00474 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99889 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00068 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 13 17 17 C 1.46846 * 111.00018 * 294.20961 * 16 15 14 18 18 C 1.53033 * 109.52460 * 174.16134 * 17 16 15 19 19 C 1.53124 * 109.27811 * 59.18358 * 18 17 16 20 20 O 1.42899 * 109.52483 * 182.44119 * 19 18 17 21 21 C 1.53125 * 109.15751 * 302.34732 * 19 18 17 22 22 C 1.46851 * 110.99682 * 170.00115 * 16 15 14 23 23 H 0.96995 * 120.00330 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47440 * 60.00150 * 9 7 2 25 25 H 1.09007 * 109.47163 * 300.00405 * 9 7 2 26 26 H 0.96998 * 119.99761 * 359.97438 * 10 9 7 27 27 H 0.96992 * 120.00503 * 359.97438 * 13 11 10 28 28 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 29 29 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 30 30 H 1.09001 * 109.46801 * 300.00349 * 15 14 13 31 31 H 1.09001 * 109.46998 * 59.99945 * 15 14 13 32 32 H 1.09002 * 109.46555 * 294.18280 * 17 16 15 33 33 H 1.09001 * 109.46296 * 54.14881 * 17 16 15 34 34 H 1.08997 * 109.50475 * 299.23909 * 18 17 16 35 35 H 1.09002 * 109.50799 * 179.12007 * 18 17 16 36 36 H 1.08998 * 109.57589 * 62.27874 * 19 18 17 37 37 H 0.96693 * 113.99955 * 299.68250 * 20 19 18 38 38 H 1.09005 * 109.50073 * 297.71107 * 21 19 18 39 39 H 1.08991 * 109.50379 * 177.59621 * 21 19 18 40 40 H 1.08989 * 109.46428 * 305.85572 * 22 16 15 41 41 H 1.09002 * 109.45912 * 65.83533 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5585 -5.1056 -0.0011 13 7 2.6297 -5.9077 -0.0016 14 6 2.1413 -7.2890 -0.0016 15 6 3.3314 -8.2506 -0.0029 16 7 2.8417 -9.6356 -0.0035 17 6 2.1370 -9.9452 1.2471 18 6 1.5173 -11.3413 1.1528 19 6 2.6237 -12.3694 0.9007 20 8 2.0449 -13.6678 0.7552 21 6 3.3734 -11.9967 -0.3814 22 6 3.9391 -10.5816 -0.2428 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4354 -0.0009 27 1 3.5833 -5.7305 -0.0020 28 1 1.5354 -7.4600 -0.8914 29 1 1.5363 -7.4604 0.8886 30 1 3.9362 -8.0790 -0.8933 31 1 3.9377 -8.0796 0.8867 32 1 2.8418 -9.9159 2.0780 33 1 1.3502 -9.2091 1.4124 34 1 0.8021 -11.3672 0.3308 35 1 1.0076 -11.5770 2.0870 36 1 3.3180 -12.3722 1.7409 37 1 1.5536 -13.9687 1.5318 38 1 2.6873 -12.0331 -1.2277 39 1 4.1895 -12.7007 -0.5434 40 1 4.4613 -10.3078 -1.1594 41 1 4.6354 -10.5496 0.5953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336814041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:57 Heat of formation + Delta-G solvation = -87.192638 kcal Electronic energy + Delta-G solvation = -20442.034710 eV Core-core repulsion = 17163.386774 eV Total energy + Delta-G solvation = -3278.647937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79361 -39.05021 -36.99591 -34.79003 -33.97855 -32.47754 -31.99551 -31.28839 -28.48066 -26.70747 -24.19944 -23.58087 -22.53016 -21.49226 -20.28474 -20.08043 -18.07588 -17.67545 -16.50217 -16.10011 -15.80247 -15.45825 -15.01850 -14.78915 -14.64059 -14.56664 -14.01892 -13.67457 -13.57601 -13.11013 -12.99511 -12.55007 -12.21548 -11.94744 -11.89289 -11.68495 -11.56466 -11.41249 -11.21887 -10.95740 -10.84844 -10.69226 -10.28621 -10.16102 -9.40218 -9.36363 -8.75466 -8.67448 -8.64409 -7.73192 -6.13335 -4.20015 3.12453 3.26844 3.31679 3.33425 3.76515 3.84291 3.98621 4.34488 4.38908 4.42186 4.67932 4.74347 4.88510 4.93511 5.01551 5.12412 5.17268 5.22222 5.22548 5.31148 5.37296 5.47198 5.54560 5.68162 5.79813 5.91950 5.93781 6.05350 6.67396 6.73636 6.91186 7.14137 7.26341 7.53960 7.57242 7.59805 7.93206 8.06645 8.78512 8.97014 9.35904 9.50518 10.96903 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.061573 B = 0.002504 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.636317 B =11180.879029 C =11470.197779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.694 3.306 12 O -0.600 6.600 13 N -0.759 5.759 14 C 0.144 3.856 15 C 0.047 3.953 16 N -0.535 5.535 17 C 0.051 3.949 18 C -0.149 4.149 19 C 0.103 3.897 20 O -0.568 6.568 21 C -0.110 4.110 22 C 0.060 3.940 23 H 0.266 0.734 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.386 0.614 27 H 0.390 0.610 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.377 0.623 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.787 -23.487 2.615 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.393 3.607 12 O -0.479 6.479 13 N -0.417 5.417 14 C 0.019 3.981 15 C -0.082 4.082 16 N -0.260 5.260 17 C -0.077 4.077 18 C -0.187 4.187 19 C 0.044 3.956 20 O -0.374 6.374 21 C -0.148 4.148 22 C -0.068 4.068 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.218 0.782 27 H 0.223 0.777 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.224 0.776 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.409 -23.523 1.642 25.035 hybrid contribution 1.634 1.186 1.280 2.391 sum 10.044 -22.337 2.922 24.665 Atomic orbital electron populations 1.69970 1.06079 1.27366 1.48877 1.24949 0.94924 0.99390 0.94802 0.86467 0.79387 0.82346 0.78628 1.20095 1.21084 1.20128 1.21191 0.93215 0.90469 1.53185 0.92019 1.18973 0.87787 0.81046 0.97608 1.45711 1.10753 1.04424 1.77324 1.16112 0.85162 0.81013 0.78409 1.90877 1.14241 1.84229 1.58550 1.45054 1.08782 1.05171 1.82654 1.20968 0.95267 0.79163 1.02699 1.22237 0.96729 0.87637 1.01566 1.61784 1.26990 1.01963 1.35279 1.22153 0.98399 0.97253 0.89850 1.22326 0.99008 0.94491 1.02900 1.21878 0.93724 0.82230 0.97775 1.86515 1.73157 1.33554 1.44133 1.21537 1.00267 0.95237 0.97738 1.22046 0.91985 0.91527 1.01246 0.92410 0.95725 0.95778 0.78207 0.77732 0.91038 0.92075 0.89932 0.94156 0.94658 0.89431 0.89890 0.91206 0.93157 0.77561 0.90056 0.90833 0.89821 0.94670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.25 5.43 -5.19 -0.03 7.22 16 10 N -0.73 -15.84 5.55 -66.41 -0.37 -16.21 16 11 C 0.69 14.59 8.57 -86.92 -0.74 13.85 16 12 O -0.60 -15.38 16.34 5.29 0.09 -15.29 16 13 N -0.76 -11.34 5.56 -65.22 -0.36 -11.71 16 14 C 0.14 1.90 5.60 -4.04 -0.02 1.88 16 15 C 0.05 0.44 5.07 -3.82 -0.02 0.42 16 16 N -0.53 -4.97 4.66 -234.67 -1.09 -6.06 16 17 C 0.05 0.45 5.29 -3.84 -0.02 0.43 16 18 C -0.15 -1.16 5.72 -26.65 -0.15 -1.31 16 19 C 0.10 0.78 3.54 -26.60 -0.09 0.69 16 20 O -0.57 -4.60 13.32 -35.23 -0.47 -5.07 16 21 C -0.11 -0.86 5.75 -26.65 -0.15 -1.02 16 22 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.39 7.09 8.34 -40.82 -0.34 6.74 16 27 H 0.39 4.52 8.49 -40.82 -0.35 4.18 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.87 6.43 -51.93 -0.33 0.53 16 30 H 0.08 0.71 7.99 -51.93 -0.41 0.29 16 31 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.86 6.21 -51.93 -0.32 0.54 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 1.51 9.09 45.56 0.41 1.93 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.58 8.01 -51.94 -0.42 0.16 16 41 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -34.48 334.75 -9.06 -43.54 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.94 Total: 6.37 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -1.67 Total: 9.06 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -1.09 Total: -59.60 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.38 Total: -20.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.48 -9.06 -43.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336814041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.653 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds