Wall clock time and date at job start Mon Mar 30 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99869 * 2 1 4 4 H 1.48504 * 109.46914 * 240.00540 * 3 2 1 5 5 H 1.48507 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47198 * 120.00445 * 3 2 1 7 7 C 1.37870 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00306 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47456 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00474 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99889 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00068 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 13 17 17 C 1.46846 * 111.00018 * 294.20961 * 16 15 14 18 18 C 1.53033 * 109.52460 * 174.16134 * 17 16 15 19 19 C 1.53124 * 109.27811 * 59.18358 * 18 17 16 20 20 O 1.42899 * 109.52483 * 182.44119 * 19 18 17 21 21 C 1.53125 * 109.15751 * 302.34732 * 19 18 17 22 22 C 1.46851 * 110.99682 * 170.00115 * 16 15 14 23 23 H 0.96995 * 120.00330 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47440 * 60.00150 * 9 7 2 25 25 H 1.09007 * 109.47163 * 300.00405 * 9 7 2 26 26 H 0.96998 * 119.99761 * 359.97438 * 10 9 7 27 27 H 0.96992 * 120.00503 * 359.97438 * 13 11 10 28 28 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 29 29 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 30 30 H 1.09001 * 109.46801 * 300.00349 * 15 14 13 31 31 H 1.09001 * 109.46998 * 59.99945 * 15 14 13 32 32 H 1.09002 * 109.46555 * 294.18280 * 17 16 15 33 33 H 1.09001 * 109.46296 * 54.14881 * 17 16 15 34 34 H 1.08997 * 109.50475 * 299.23909 * 18 17 16 35 35 H 1.09002 * 109.50799 * 179.12007 * 18 17 16 36 36 H 1.08998 * 109.57589 * 62.27874 * 19 18 17 37 37 H 0.96693 * 113.99955 * 299.68250 * 20 19 18 38 38 H 1.09005 * 109.50073 * 297.71107 * 21 19 18 39 39 H 1.08991 * 109.50379 * 177.59621 * 21 19 18 40 40 H 1.08989 * 109.46428 * 305.85572 * 22 16 15 41 41 H 1.09002 * 109.45912 * 65.83533 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5585 -5.1056 -0.0011 13 7 2.6297 -5.9077 -0.0016 14 6 2.1413 -7.2890 -0.0016 15 6 3.3314 -8.2506 -0.0029 16 7 2.8417 -9.6356 -0.0035 17 6 2.1370 -9.9452 1.2471 18 6 1.5173 -11.3413 1.1528 19 6 2.6237 -12.3694 0.9007 20 8 2.0449 -13.6678 0.7552 21 6 3.3734 -11.9967 -0.3814 22 6 3.9391 -10.5816 -0.2428 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4354 -0.0009 27 1 3.5833 -5.7305 -0.0020 28 1 1.5354 -7.4600 -0.8914 29 1 1.5363 -7.4604 0.8886 30 1 3.9362 -8.0790 -0.8933 31 1 3.9377 -8.0796 0.8867 32 1 2.8418 -9.9159 2.0780 33 1 1.3502 -9.2091 1.4124 34 1 0.8021 -11.3672 0.3308 35 1 1.0076 -11.5770 2.0870 36 1 3.3180 -12.3722 1.7409 37 1 1.5536 -13.9687 1.5318 38 1 2.6873 -12.0331 -1.2277 39 1 4.1895 -12.7007 -0.5434 40 1 4.4613 -10.3078 -1.1594 41 1 4.6354 -10.5496 0.5953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336814041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:57 Heat of formation + Delta-G solvation = -117.525235 kcal Electronic energy + Delta-G solvation = -20443.350030 eV Core-core repulsion = 17163.386774 eV Total energy + Delta-G solvation = -3279.963257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94993 -40.24786 -37.73454 -36.29111 -35.72784 -34.35156 -33.04355 -31.91528 -29.89290 -28.36532 -25.21156 -24.46699 -24.07788 -22.44572 -21.89293 -20.82769 -19.79650 -18.27687 -18.01989 -17.57014 -16.91065 -16.85128 -16.31983 -16.06173 -15.65673 -15.46564 -15.09088 -14.94875 -14.85206 -14.41485 -14.01887 -13.97735 -13.79516 -13.19572 -12.91338 -12.84314 -12.66842 -12.62084 -12.22149 -12.20833 -12.11091 -12.07192 -11.48853 -11.29070 -11.27329 -10.78486 -10.76960 -10.26237 -9.57765 -9.34840 -8.26951 -6.43672 1.44308 1.49061 1.56954 1.81287 2.24751 2.40203 2.90593 3.07791 3.28853 3.61926 3.73172 3.81991 3.90183 4.09108 4.16898 4.24319 4.36871 4.45763 4.53933 4.59053 4.76509 4.84654 4.90088 4.95228 4.96656 5.04652 5.11630 5.16996 5.28072 5.34000 5.48959 5.51908 5.68719 5.86188 6.02059 6.08083 6.28062 6.68024 6.87335 7.25579 7.33202 7.73183 8.85264 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.061573 B = 0.002504 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.636317 B =11180.879029 C =11470.197779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.691 3.309 12 O -0.651 6.651 13 N -0.730 5.730 14 C 0.145 3.855 15 C 0.060 3.940 16 N -0.551 5.551 17 C 0.051 3.949 18 C -0.145 4.145 19 C 0.104 3.896 20 O -0.586 6.586 21 C -0.111 4.111 22 C 0.063 3.937 23 H 0.269 0.731 24 H -0.015 1.015 25 H -0.015 1.015 26 H 0.406 0.594 27 H 0.412 0.588 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.865 -23.702 3.052 27.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.376 5.376 11 C 0.390 3.610 12 O -0.533 6.533 13 N -0.389 5.389 14 C 0.020 3.980 15 C -0.068 4.068 16 N -0.277 5.277 17 C -0.077 4.077 18 C -0.183 4.183 19 C 0.046 3.954 20 O -0.394 6.394 21 C -0.149 4.149 22 C -0.064 4.064 23 H 0.078 0.922 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.241 0.759 27 H 0.249 0.751 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.243 0.757 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.575 -23.803 2.087 26.550 hybrid contribution 0.624 1.125 1.146 1.724 sum 12.200 -22.677 3.233 25.953 Atomic orbital electron populations 1.70142 1.08304 1.28638 1.49911 1.26091 0.95801 1.03945 0.93892 0.85173 0.77852 0.76456 0.79499 1.18627 1.21165 1.18611 1.21574 0.94347 0.90414 1.52957 0.89705 1.18409 0.88138 0.83387 0.93917 1.45279 1.10938 1.03743 1.77671 1.16300 0.85075 0.81643 0.77955 1.90845 1.16905 1.84987 1.60608 1.44752 1.09139 1.04509 1.80450 1.21057 0.96976 0.78693 1.01232 1.22088 0.94806 0.86819 1.03106 1.61739 1.28073 1.02115 1.35731 1.22140 0.98217 0.97235 0.90131 1.22282 0.98846 0.94253 1.02885 1.21882 0.93656 0.81884 0.98023 1.86477 1.73571 1.33710 1.45636 1.21546 1.00239 0.95803 0.97276 1.22071 0.91486 0.90686 1.02194 0.92245 0.99747 0.99709 0.75888 0.75139 0.93101 0.93167 0.88372 0.92498 0.93512 0.91111 0.91901 0.89715 0.91809 0.75677 0.91905 0.89917 0.88915 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.35 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.56 -30.41 9.28 25.60 0.24 -30.17 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.28 16.02 5.43 85.63 0.46 16.48 16 10 N -0.72 -31.45 5.55 -482.29 -2.68 -34.13 16 11 C 0.69 29.35 8.57 179.06 1.53 30.89 16 12 O -0.65 -34.69 16.34 -4.00 -0.07 -34.75 16 13 N -0.73 -20.99 5.56 -478.52 -2.66 -23.65 16 14 C 0.15 3.75 5.60 86.38 0.48 4.23 16 15 C 0.06 1.00 5.07 86.31 0.44 1.43 16 16 N -0.55 -9.37 4.66 -896.37 -4.17 -13.54 16 17 C 0.05 0.83 5.29 86.32 0.46 1.29 16 18 C -0.14 -2.12 5.72 30.65 0.18 -1.95 16 19 C 0.10 1.42 3.54 30.68 0.11 1.53 16 20 O -0.59 -8.71 13.32 -148.98 -1.99 -10.70 16 21 C -0.11 -1.57 5.75 30.65 0.18 -1.40 16 22 C 0.06 0.81 5.46 86.32 0.47 1.28 16 23 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 25 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 26 H 0.41 14.28 8.34 -92.71 -0.77 13.50 16 27 H 0.41 8.44 8.49 -92.71 -0.79 7.65 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.44 6.43 -2.39 -0.02 1.42 16 30 H 0.10 1.36 7.99 -2.39 -0.02 1.35 16 31 H 0.06 0.80 8.12 -2.39 -0.02 0.78 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.07 1.39 6.21 -2.39 -0.01 1.38 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.39 2.60 9.09 -74.06 -0.67 1.92 16 38 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.03 8.01 -2.39 -0.02 1.01 16 41 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -77.24 334.75 -5.43 -82.67 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -1.19 Total: 21.99 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 5.01 Total: 24.20 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -9.23 Total: -127.76 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -2.05 Total: -45.45 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -77.24 -5.43 -82.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336814041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.857 kcal (2) G-P(sol) polarization free energy of solvation -77.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds