Wall clock time and date at job start Mon Mar 30 2020 01:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.52996 * 109.47112 * 239.99956 * 2 1 3 5 5 C 1.50697 * 109.47179 * 59.99929 * 4 2 1 6 6 H 1.07999 * 119.99928 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00062 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00115 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00154 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46925 * 60.00199 * 9 7 5 11 11 H 1.48503 * 109.47135 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47031 * 300.00343 * 9 7 5 13 13 C 1.53000 * 109.47051 * 119.99785 * 2 1 3 14 14 N 1.46496 * 109.47267 * 300.00006 * 13 2 1 15 15 C 1.34776 * 120.00026 * 179.97438 * 14 13 2 16 16 O 1.21591 * 120.00198 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99830 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99880 * 179.97438 * 17 15 14 19 19 H 1.09008 * 110.38454 * 35.96540 * 18 17 15 20 20 C 1.54634 * 110.54212 * 158.44521 * 18 17 15 21 21 N 1.48796 * 102.88382 * 140.93173 * 20 18 17 22 22 O 1.47805 * 103.99099 * 322.37736 * 21 20 18 23 23 C 1.43969 * 106.16686 * 40.18306 * 22 21 20 24 24 H 1.08996 * 109.46896 * 299.99752 * 1 2 3 25 25 H 1.08995 * 109.47223 * 60.00273 * 1 2 3 26 26 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46766 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.46882 * 299.99935 * 3 2 1 29 29 H 1.08992 * 109.46938 * 59.99867 * 3 2 1 30 30 H 1.09001 * 109.46955 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.46954 * 299.99862 * 4 2 1 32 32 H 0.97002 * 120.00502 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47130 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47216 * 60.00016 * 13 2 1 35 35 H 0.97003 * 120.00067 * 0.02562 * 14 13 2 36 36 H 0.96994 * 120.00193 * 0.02562 * 17 15 14 37 37 H 1.08999 * 110.73330 * 259.28834 * 20 18 17 38 38 H 1.09004 * 110.72983 * 22.58685 * 20 18 17 39 39 H 1.00903 * 111.00151 * 202.94645 * 21 20 18 40 40 H 1.09002 * 110.07961 * 215.50628 * 23 22 21 41 41 H 1.08995 * 110.08076 * 94.00611 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6273 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 1.7419 1.7989 -5.2571 11 1 1.7441 -0.3008 -6.4697 12 1 -0.2370 0.3974 -5.2572 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4913 3.6695 16 8 2.5759 -1.4799 3.7811 17 7 1.4280 0.1444 4.7699 18 6 1.7810 -0.3568 6.1006 19 1 2.7960 -0.7545 6.0996 20 6 1.6413 0.7637 7.1571 21 7 1.0685 0.0461 8.3280 22 8 0.1282 -0.9236 7.7279 23 6 0.7796 -1.4383 6.5516 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7216 -1.2489 31 1 1.6767 -1.7489 -1.2492 32 1 2.8623 -1.8819 -4.7336 33 1 3.1300 -0.7216 1.2491 34 1 1.6767 -1.7489 1.2493 35 1 0.9937 0.7579 2.3564 36 1 0.8707 0.9332 4.6809 37 1 2.6155 1.1865 7.4023 38 1 0.9594 1.5395 6.8087 39 1 0.5863 0.6844 8.9429 40 1 0.0456 -1.6195 5.7664 41 1 1.3078 -2.3614 6.7899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336877622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:15 Heat of formation + Delta-G solvation = -35.423507 kcal Electronic energy + Delta-G solvation = -21135.552579 eV Core-core repulsion = 17859.149520 eV Total energy + Delta-G solvation = -3276.403059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28528 -38.76231 -37.18432 -34.56688 -33.63545 -32.24416 -31.96021 -29.44408 -27.10193 -26.54512 -26.00097 -24.40637 -23.04438 -21.73747 -20.76843 -18.93236 -17.99221 -17.44018 -16.57398 -16.33895 -15.75168 -15.33123 -15.15141 -14.58244 -14.27118 -14.06978 -13.85772 -13.68337 -13.08383 -13.07584 -12.78060 -12.48202 -12.24107 -12.07329 -11.95547 -11.18522 -11.02790 -10.99654 -10.89202 -10.65480 -10.42649 -10.28893 -10.15412 -9.90164 -9.44380 -9.29477 -9.23045 -8.96042 -8.66794 -8.37277 -6.01390 -4.02977 2.53105 2.70664 3.24854 3.30542 3.36260 3.37178 3.98967 4.14522 4.30491 4.44219 4.55784 4.69721 5.04997 5.14152 5.33942 5.43324 5.49752 5.55651 5.60835 5.71601 6.11659 6.13880 6.17203 6.23020 6.27081 6.29580 6.37451 6.54677 6.59815 6.73513 6.90926 7.03488 7.04728 7.11079 7.62142 7.74441 7.96879 8.04987 8.38496 8.65535 9.01593 9.60156 11.10015 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.051933 B = 0.003086 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.031977 B = 9072.384807 C = 9200.575432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.146 3.854 14 N -0.734 5.734 15 C 0.700 3.300 16 O -0.589 6.589 17 N -0.747 5.747 18 C 0.146 3.854 19 H 0.111 0.889 20 C -0.005 4.005 21 N -0.480 5.480 22 O -0.247 6.247 23 C 0.036 3.964 24 H 0.027 0.973 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.027 0.973 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.394 0.606 36 H 0.395 0.605 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.354 0.646 40 H 0.092 0.908 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 7.255 19.903 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.023 3.977 14 N -0.389 5.389 15 C 0.400 3.600 16 O -0.467 6.467 17 N -0.404 5.404 18 C 0.038 3.962 19 H 0.129 0.871 20 C -0.135 4.135 21 N -0.149 5.149 22 O -0.256 6.256 23 C -0.044 4.044 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.229 0.771 36 H 0.230 0.770 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.169 0.831 40 H 0.110 0.890 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.910 5.657 20.071 21.055 hybrid contribution -1.427 1.871 -1.427 2.752 sum -4.338 7.528 18.644 20.569 Atomic orbital electron populations 1.21753 0.95289 1.01177 1.00123 1.20922 0.95466 0.95875 0.95044 1.21749 1.00562 0.95891 1.00120 1.19082 0.96385 0.95239 0.89382 1.21138 1.31316 1.12103 0.90532 0.92331 1.25011 0.95298 0.95072 0.99073 1.69951 1.36826 1.22982 1.23590 0.86710 0.79141 0.79753 0.82686 1.20343 1.21378 1.20330 1.21525 0.98748 0.95687 0.81769 1.45385 1.55911 1.33123 1.04496 1.16006 0.80403 0.83020 0.80564 1.90939 1.42554 1.27303 1.85892 1.45200 1.57451 1.33424 1.04351 1.22097 1.00815 0.92406 0.80913 0.87067 1.23895 1.02180 0.95786 0.91679 1.69702 1.19737 1.15301 1.10192 1.91608 1.36372 1.55153 1.42431 1.23771 0.96355 0.97019 0.87246 0.95370 0.91462 0.93337 0.93341 0.91468 0.95369 0.96302 0.96302 0.92946 0.91888 0.91900 0.77102 0.77049 0.86652 0.91806 0.83072 0.89022 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.04 0.89 4.04 -27.89 -0.11 0.77 16 5 C -0.51 -13.44 7.65 -34.44 -0.26 -13.70 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.15 2.52 4.56 -4.04 -0.02 2.51 16 14 N -0.73 -10.15 4.96 -65.23 -0.32 -10.47 16 15 C 0.70 10.06 8.56 -86.92 -0.74 9.31 16 16 O -0.59 -10.98 16.05 5.29 0.08 -10.89 16 17 N -0.75 -7.45 5.05 -57.25 -0.29 -7.74 16 18 C 0.15 1.40 3.38 -66.47 -0.22 1.17 16 19 H 0.11 1.23 7.66 -51.92 -0.40 0.83 16 20 C 0.00 -0.03 7.54 -1.91 -0.01 -0.04 16 21 N -0.48 -3.91 8.54 -8.43 -0.07 -3.99 16 22 O -0.25 -2.72 12.64 -14.79 -0.19 -2.91 16 23 C 0.04 0.38 7.72 37.75 0.29 0.67 16 24 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 25 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 29 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.39 4.49 6.18 -40.82 -0.25 4.24 16 36 H 0.40 2.84 8.37 -40.82 -0.34 2.50 16 37 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.33 7.75 -51.93 -0.40 -0.07 16 39 H 0.35 2.02 9.09 -39.29 -0.36 1.66 16 40 H 0.09 1.02 7.94 -51.93 -0.41 0.61 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -32.03 330.01 -7.15 -39.18 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.38 Total: 4.32 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.67 Total: -2.95 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.05 Total: -47.70 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.10 Total: -13.80 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.03 -7.15 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336877622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.754 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds