Wall clock time and date at job start Mon Mar 30 2020 01:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.52996 * 109.47112 * 239.99956 * 2 1 3 5 5 C 1.50697 * 109.47179 * 59.99929 * 4 2 1 6 6 H 1.07999 * 119.99928 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00062 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00115 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00154 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46925 * 60.00199 * 9 7 5 11 11 H 1.48503 * 109.47135 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47031 * 300.00343 * 9 7 5 13 13 C 1.53000 * 109.47051 * 119.99785 * 2 1 3 14 14 N 1.46496 * 109.47267 * 300.00006 * 13 2 1 15 15 C 1.34776 * 120.00026 * 179.97438 * 14 13 2 16 16 O 1.21591 * 120.00198 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99830 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99880 * 179.97438 * 17 15 14 19 19 H 1.09008 * 110.38454 * 35.96540 * 18 17 15 20 20 C 1.54634 * 110.54212 * 158.44521 * 18 17 15 21 21 N 1.48796 * 102.88382 * 140.93173 * 20 18 17 22 22 O 1.47805 * 103.99099 * 322.37736 * 21 20 18 23 23 C 1.43969 * 106.16686 * 40.18306 * 22 21 20 24 24 H 1.08996 * 109.46896 * 299.99752 * 1 2 3 25 25 H 1.08995 * 109.47223 * 60.00273 * 1 2 3 26 26 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46766 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.46882 * 299.99935 * 3 2 1 29 29 H 1.08992 * 109.46938 * 59.99867 * 3 2 1 30 30 H 1.09001 * 109.46955 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.46954 * 299.99862 * 4 2 1 32 32 H 0.97002 * 120.00502 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47130 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47216 * 60.00016 * 13 2 1 35 35 H 0.97003 * 120.00067 * 0.02562 * 14 13 2 36 36 H 0.96994 * 120.00193 * 0.02562 * 17 15 14 37 37 H 1.08999 * 110.73330 * 259.28834 * 20 18 17 38 38 H 1.09004 * 110.72983 * 22.58685 * 20 18 17 39 39 H 1.00903 * 111.00151 * 202.94645 * 21 20 18 40 40 H 1.09002 * 110.07961 * 215.50628 * 23 22 21 41 41 H 1.08995 * 110.08076 * 94.00611 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6273 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 1.7419 1.7989 -5.2571 11 1 1.7441 -0.3008 -6.4697 12 1 -0.2370 0.3974 -5.2572 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4913 3.6695 16 8 2.5759 -1.4799 3.7811 17 7 1.4280 0.1444 4.7699 18 6 1.7810 -0.3568 6.1006 19 1 2.7960 -0.7545 6.0996 20 6 1.6413 0.7637 7.1571 21 7 1.0685 0.0461 8.3280 22 8 0.1282 -0.9236 7.7279 23 6 0.7796 -1.4383 6.5516 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7216 -1.2489 31 1 1.6767 -1.7489 -1.2492 32 1 2.8623 -1.8819 -4.7336 33 1 3.1300 -0.7216 1.2491 34 1 1.6767 -1.7489 1.2493 35 1 0.9937 0.7579 2.3564 36 1 0.8707 0.9332 4.6809 37 1 2.6155 1.1865 7.4023 38 1 0.9594 1.5395 6.8087 39 1 0.5863 0.6844 8.9429 40 1 0.0456 -1.6195 5.7664 41 1 1.3078 -2.3614 6.7899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336877622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:15 Heat of formation + Delta-G solvation = -60.551075 kcal Electronic energy + Delta-G solvation = -21136.642192 eV Core-core repulsion = 17859.149520 eV Total energy + Delta-G solvation = -3277.492672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36965 -39.69534 -38.60666 -35.55427 -35.23244 -33.91370 -32.77688 -30.37248 -28.99521 -27.94361 -27.38594 -25.19621 -24.78660 -22.67171 -21.86162 -20.22444 -19.18457 -18.44227 -18.29822 -17.41829 -16.76235 -16.52201 -16.27572 -16.20509 -15.53352 -15.20877 -15.04440 -14.62465 -14.59739 -14.31514 -13.91985 -13.84898 -13.72373 -13.11040 -12.88344 -12.79232 -12.74701 -12.55891 -12.31070 -12.21355 -11.99111 -11.78922 -11.51792 -11.40649 -10.97100 -10.85272 -10.49552 -10.45373 -10.01779 -9.82777 -8.12854 -6.20734 1.43226 1.45228 1.52296 1.57536 1.91592 2.11615 2.45115 3.20081 3.21612 3.35359 3.52843 3.86414 3.98962 4.04837 4.11232 4.24436 4.34741 4.56322 4.64253 4.70376 4.75066 4.76524 4.82648 4.98460 5.12553 5.14283 5.33568 5.41076 5.46965 5.49459 5.52344 5.55801 5.59647 5.77752 5.82402 5.91177 5.96150 6.32082 6.94340 7.06295 7.47035 7.54276 8.99515 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.051933 B = 0.003086 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.031977 B = 9072.384807 C = 9200.575432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.267 1.267 13 C 0.161 3.839 14 N -0.721 5.721 15 C 0.700 3.300 16 O -0.635 6.635 17 N -0.723 5.723 18 C 0.143 3.857 19 H 0.095 0.905 20 C 0.006 3.994 21 N -0.483 5.483 22 O -0.269 6.269 23 C 0.037 3.963 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.071 0.929 30 H -0.014 1.014 31 H -0.015 1.015 32 H 0.259 0.741 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.411 0.589 36 H 0.414 0.586 37 H 0.136 0.864 38 H 0.088 0.912 39 H 0.369 0.631 40 H 0.085 0.915 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 10.243 21.207 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.192 1.192 13 C 0.036 3.964 14 N -0.377 5.377 15 C 0.400 3.600 16 O -0.516 6.516 17 N -0.381 5.381 18 C 0.035 3.965 19 H 0.113 0.887 20 C -0.125 4.125 21 N -0.156 5.156 22 O -0.276 6.276 23 C -0.042 4.042 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.005 0.995 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.249 0.751 36 H 0.252 0.748 37 H 0.154 0.846 38 H 0.106 0.894 39 H 0.186 0.814 40 H 0.103 0.897 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.440 8.714 21.415 23.543 hybrid contribution -0.944 0.933 -1.727 2.178 sum -5.384 9.647 19.688 22.576 Atomic orbital electron populations 1.21687 0.93590 1.00903 1.01621 1.20711 0.96688 0.96379 0.92674 1.21681 0.99911 0.94519 1.01644 1.18968 0.94313 0.94191 0.92325 1.21572 1.30459 1.12113 0.91068 0.90866 1.25948 0.95677 0.95857 1.02725 1.70116 1.38769 1.24993 1.24145 0.85608 0.78950 0.78777 0.78353 1.19097 1.21803 1.19159 1.21063 0.97567 0.94944 0.82812 1.44998 1.56009 1.33346 1.03379 1.16126 0.80008 0.82606 0.81296 1.90921 1.44640 1.29499 1.86560 1.44926 1.56629 1.33282 1.03285 1.22140 0.99590 0.93517 0.81213 0.88727 1.23949 1.03748 0.94847 0.89926 1.69702 1.19243 1.15785 1.10821 1.91586 1.37414 1.56211 1.42419 1.23646 0.96233 0.97077 0.87280 0.91091 0.92629 0.94576 0.94452 0.92658 0.91020 0.99545 0.99640 0.93186 0.93717 0.93888 0.75144 0.74812 0.84601 0.89357 0.81396 0.89732 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 8.05 71.98 0.58 -3.31 16 2 C -0.06 -2.33 0.54 -52.18 -0.03 -2.36 16 3 C -0.12 -3.83 8.05 71.98 0.58 -3.26 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -27.18 7.65 25.60 0.20 -26.99 16 6 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 9 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.16 5.59 4.56 86.38 0.39 5.98 16 14 N -0.72 -18.46 4.96 -478.54 -2.37 -20.83 16 15 C 0.70 19.10 8.56 179.05 1.53 20.64 16 16 O -0.64 -23.80 16.05 -4.00 -0.06 -23.87 16 17 N -0.72 -12.56 5.05 -453.29 -2.29 -14.85 16 18 C 0.14 2.49 3.38 45.93 0.16 2.65 16 19 H 0.09 2.03 7.66 -2.38 -0.02 2.01 16 20 C 0.01 0.06 7.54 86.49 0.65 0.71 16 21 N -0.48 -6.68 8.54 -180.57 -1.54 -8.22 16 22 O -0.27 -5.55 12.64 -54.19 -0.69 -6.24 16 23 C 0.04 0.77 7.72 72.37 0.56 1.33 16 24 H 0.07 1.67 6.86 -2.39 -0.02 1.65 16 25 H 0.05 1.93 6.62 -2.39 -0.02 1.91 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.90 6.62 -2.39 -0.02 1.89 16 29 H 0.07 1.65 6.86 -2.39 -0.02 1.64 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 31 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 32 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.41 7.69 6.18 -92.71 -0.57 7.11 16 36 H 0.41 4.25 8.37 -92.71 -0.78 3.47 16 37 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.50 7.75 -2.39 -0.02 0.48 16 39 H 0.37 3.14 9.09 -89.69 -0.82 2.32 16 40 H 0.08 1.84 7.94 -2.39 -0.02 1.82 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.71 330.01 -0.55 -73.26 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -1.11 Total: 14.56 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.20 Total: -2.33 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -5.92 Total: -100.56 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.75 Total: -30.10 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.71 -0.55 -73.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336877622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.710 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds