Wall clock time and date at job start Mon Mar 30 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99861 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00522 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46950 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47438 * 119.99718 * 9 7 5 12 12 H 1.48505 * 109.46997 * 239.99833 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 14 14 N 1.46506 * 109.47075 * 59.99940 * 13 2 1 15 15 C 1.34777 * 120.00264 * 179.97438 * 14 13 2 16 16 O 1.21579 * 119.99978 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99902 * 180.02562 * 15 14 13 18 18 C 1.46499 * 119.99966 * 180.02562 * 17 15 14 19 19 H 1.08995 * 110.39743 * 327.44167 * 18 17 15 20 20 C 1.54305 * 110.44783 * 205.00003 * 18 17 15 21 21 N 1.48223 * 105.06061 * 240.47983 * 20 18 17 22 22 O 1.47741 * 105.37923 * 24.30535 * 21 20 18 23 23 C 1.44613 * 104.63305 * 319.56794 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 0.96992 * 120.00310 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 35 35 H 0.96999 * 119.99689 * 0.02562 * 14 13 2 36 36 H 0.96999 * 120.00050 * 359.97438 * 17 15 14 37 37 H 1.09007 * 110.32115 * 359.37355 * 20 18 17 38 38 H 1.08996 * 110.32425 * 121.57982 * 20 18 17 39 39 H 1.00890 * 110.99639 * 264.05634 * 21 20 18 40 40 H 1.08997 * 110.53419 * 280.41101 * 23 22 21 41 41 H 1.09002 * 110.52916 * 157.65303 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5377 -0.0110 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8712 -0.4817 3.7319 8 7 2.6272 -1.5510 3.8527 9 14 1.2479 0.3984 5.2572 10 1 0.4226 1.5649 4.8530 11 1 0.4236 -0.5355 6.0656 12 1 2.4027 0.8659 6.0655 13 6 2.0400 -0.7213 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6696 16 8 2.5767 -1.4793 -3.7811 17 7 1.4288 0.1449 -4.7700 18 6 1.7828 -0.3556 -6.1005 19 1 2.7748 -0.8069 -6.0852 20 6 1.7253 0.7849 -7.1383 21 7 0.7049 0.3572 -8.1246 22 8 -0.1718 -0.5843 -7.3980 23 6 0.7306 -1.3752 -6.5911 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 2.8615 -1.8824 4.7336 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2493 35 1 0.9943 0.7582 -2.3564 36 1 0.8709 0.9333 -4.6809 37 1 1.4228 1.7167 -6.6604 38 1 2.6940 0.9044 -7.6234 39 1 1.1357 -0.0901 -8.9197 40 1 1.2023 -2.1512 -7.1940 41 1 0.2016 -1.8154 -5.7458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338609198.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:18 Heat of formation + Delta-G solvation = -35.514048 kcal Electronic energy + Delta-G solvation = -21182.026237 eV Core-core repulsion = 17905.619252 eV Total energy + Delta-G solvation = -3276.406985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35303 -38.91135 -37.18454 -34.50568 -33.63220 -32.24859 -31.91300 -29.32551 -27.09727 -26.52942 -26.00733 -24.68383 -23.02929 -21.70095 -20.75152 -18.93912 -17.90418 -17.37832 -16.93149 -16.29425 -15.88824 -15.45699 -15.18652 -14.57661 -14.32996 -14.15099 -13.82298 -13.39939 -13.07872 -12.84338 -12.72952 -12.46872 -12.29899 -12.08139 -12.06159 -11.18333 -11.04141 -10.86729 -10.84870 -10.66169 -10.42305 -10.25414 -10.16624 -9.89910 -9.80609 -9.33056 -9.22687 -8.93519 -8.65604 -8.37577 -6.01415 -4.02723 2.63257 2.67123 3.23788 3.29155 3.37393 3.39656 3.88520 4.10392 4.26694 4.43012 4.45117 4.62099 4.84755 5.18616 5.27030 5.34258 5.39925 5.47336 5.61542 5.72892 5.97094 6.15567 6.18727 6.21904 6.26523 6.38350 6.43293 6.55564 6.61393 6.74745 6.93221 7.04704 7.05845 7.11983 7.62799 7.74659 7.97275 8.06256 8.38957 8.65518 9.02346 9.60607 11.10099 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.049695 B = 0.003135 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.299075 B = 8929.724153 C = 9062.541609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.146 3.854 14 N -0.734 5.734 15 C 0.700 3.300 16 O -0.594 6.594 17 N -0.741 5.741 18 C 0.123 3.877 19 H 0.109 0.891 20 C 0.004 3.996 21 N -0.482 5.482 22 O -0.212 6.212 23 C -0.003 4.003 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.259 0.741 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.399 0.601 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.342 0.658 40 H 0.072 0.928 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 5.348 -20.707 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.023 3.977 14 N -0.388 5.388 15 C 0.400 3.600 16 O -0.472 6.472 17 N -0.398 5.398 18 C 0.014 3.986 19 H 0.127 0.873 20 C -0.127 4.127 21 N -0.146 5.146 22 O -0.223 6.223 23 C -0.084 4.084 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.230 0.770 36 H 0.234 0.766 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.157 0.843 40 H 0.090 0.910 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.229 4.907 -20.635 21.327 hybrid contribution 0.098 0.253 1.164 1.196 sum -2.131 5.160 -19.470 20.255 Atomic orbital electron populations 1.21756 0.95243 1.01170 1.00198 1.20920 0.95509 0.95881 0.95002 1.21751 1.00520 0.95887 1.00183 1.19093 0.96371 0.95247 0.89438 1.21217 1.31118 1.12056 0.90495 0.92193 1.25015 0.95312 0.95085 0.99106 1.69970 1.37004 1.23056 1.23352 0.86595 0.78610 0.79682 0.83446 1.19795 1.21123 1.21138 1.21523 0.98688 0.95673 0.81820 1.45384 1.55854 1.33133 1.04470 1.16028 0.80359 0.82980 0.80652 1.90919 1.42872 1.27454 1.85982 1.45133 1.57200 1.33502 1.03993 1.22709 1.00119 0.93190 0.82575 0.87339 1.23852 0.95894 0.99326 0.93597 1.68956 1.19453 1.22535 1.03705 1.92222 1.22454 1.48561 1.59106 1.24476 0.92968 0.94278 0.96658 0.95299 0.91435 0.93358 0.91441 0.93371 0.95319 0.96311 0.96320 0.93080 0.91945 0.91951 0.77003 0.76636 0.87828 0.88845 0.84344 0.90965 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.16 8.05 37.15 0.30 -1.86 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.43 7.65 -34.44 -0.26 -13.70 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.15 2.55 4.56 -4.04 -0.02 2.53 16 14 N -0.73 -10.33 4.96 -65.22 -0.32 -10.66 16 15 C 0.70 10.15 8.56 -86.92 -0.74 9.40 16 16 O -0.59 -11.01 15.99 5.30 0.08 -10.92 16 17 N -0.74 -7.63 5.08 -57.24 -0.29 -7.92 16 18 C 0.12 1.11 3.45 -66.46 -0.23 0.88 16 19 H 0.11 1.07 7.55 -51.93 -0.39 0.68 16 20 C 0.00 0.03 7.59 -2.41 -0.02 0.01 16 21 N -0.48 -3.82 8.43 -8.94 -0.08 -3.89 16 22 O -0.21 -2.28 12.76 -14.75 -0.19 -2.47 16 23 C 0.00 -0.03 7.63 37.95 0.29 0.26 16 24 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.40 4.66 6.18 -40.82 -0.25 4.41 16 36 H 0.40 3.25 8.38 -40.82 -0.34 2.90 16 37 H 0.10 0.65 7.67 -51.92 -0.40 0.25 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.34 1.89 9.09 -39.30 -0.36 1.53 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.11 1.19 8.06 -51.93 -0.42 0.77 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -32.23 329.96 -7.16 -39.39 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.38 Total: 4.59 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.68 Total: -3.60 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.05 Total: -48.02 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.10 Total: -13.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.23 -7.16 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338609198.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.877 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds