Wall clock time and date at job start Mon Mar 30 2020 01:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99861 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00522 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46950 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47438 * 119.99718 * 9 7 5 12 12 H 1.48505 * 109.46997 * 239.99833 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 14 14 N 1.46506 * 109.47075 * 59.99940 * 13 2 1 15 15 C 1.34777 * 120.00264 * 179.97438 * 14 13 2 16 16 O 1.21579 * 119.99978 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99902 * 180.02562 * 15 14 13 18 18 C 1.46499 * 119.99966 * 180.02562 * 17 15 14 19 19 H 1.08995 * 110.39743 * 327.44167 * 18 17 15 20 20 C 1.54305 * 110.44783 * 205.00003 * 18 17 15 21 21 N 1.48223 * 105.06061 * 240.47983 * 20 18 17 22 22 O 1.47741 * 105.37923 * 24.30535 * 21 20 18 23 23 C 1.44613 * 104.63305 * 319.56794 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 0.96992 * 120.00310 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 35 35 H 0.96999 * 119.99689 * 0.02562 * 14 13 2 36 36 H 0.96999 * 120.00050 * 359.97438 * 17 15 14 37 37 H 1.09007 * 110.32115 * 359.37355 * 20 18 17 38 38 H 1.08996 * 110.32425 * 121.57982 * 20 18 17 39 39 H 1.00890 * 110.99639 * 264.05634 * 21 20 18 40 40 H 1.08997 * 110.53419 * 280.41101 * 23 22 21 41 41 H 1.09002 * 110.52916 * 157.65303 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5377 -0.0110 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8712 -0.4817 3.7319 8 7 2.6272 -1.5510 3.8527 9 14 1.2479 0.3984 5.2572 10 1 0.4226 1.5649 4.8530 11 1 0.4236 -0.5355 6.0656 12 1 2.4027 0.8659 6.0655 13 6 2.0400 -0.7213 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6696 16 8 2.5767 -1.4793 -3.7811 17 7 1.4288 0.1449 -4.7700 18 6 1.7828 -0.3556 -6.1005 19 1 2.7748 -0.8069 -6.0852 20 6 1.7253 0.7849 -7.1383 21 7 0.7049 0.3572 -8.1246 22 8 -0.1718 -0.5843 -7.3980 23 6 0.7306 -1.3752 -6.5911 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 2.8615 -1.8824 4.7336 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2493 35 1 0.9943 0.7582 -2.3564 36 1 0.8709 0.9333 -4.6809 37 1 1.4228 1.7167 -6.6604 38 1 2.6940 0.9044 -7.6234 39 1 1.1357 -0.0901 -8.9197 40 1 1.2023 -2.1512 -7.1940 41 1 0.2016 -1.8154 -5.7458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338609198.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:17 Heat of formation + Delta-G solvation = -60.682137 kcal Electronic energy + Delta-G solvation = -21183.117607 eV Core-core repulsion = 17905.619252 eV Total energy + Delta-G solvation = -3277.498355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40432 -39.83027 -38.63016 -35.47934 -35.23427 -33.91580 -32.72113 -30.21220 -28.99498 -27.95017 -27.39358 -25.41264 -24.80796 -22.60135 -21.83075 -20.22620 -19.19094 -18.37290 -18.09996 -17.83151 -16.67090 -16.56518 -16.51455 -16.19537 -15.59159 -15.30263 -15.10717 -14.61521 -14.40252 -14.18951 -13.93297 -13.82702 -13.38072 -13.11419 -12.93373 -12.86724 -12.69496 -12.58276 -12.33353 -12.22439 -11.94202 -11.66392 -11.52966 -11.41970 -10.97816 -10.84105 -10.51573 -10.47261 -10.34028 -9.81442 -8.13590 -6.21171 1.42051 1.43274 1.54704 1.61618 1.94425 2.12833 2.44672 3.20746 3.21169 3.29577 3.48075 3.72361 3.98202 4.04037 4.10356 4.23202 4.23756 4.55269 4.58674 4.69801 4.73175 4.74627 4.79639 4.97862 5.11762 5.13746 5.30186 5.40572 5.43759 5.49205 5.51511 5.55039 5.59095 5.81527 5.85937 5.91086 5.98234 6.31814 6.94156 7.04896 7.46665 7.53069 8.99198 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.049695 B = 0.003135 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.299075 B = 8929.724153 C = 9062.541609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.162 3.838 14 N -0.722 5.722 15 C 0.700 3.300 16 O -0.637 6.637 17 N -0.722 5.722 18 C 0.120 3.880 19 H 0.101 0.899 20 C 0.013 3.987 21 N -0.482 5.482 22 O -0.239 6.239 23 C -0.001 4.001 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.070 0.930 30 H -0.014 1.014 31 H -0.013 1.013 32 H 0.259 0.741 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.410 0.590 36 H 0.413 0.587 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.356 0.644 40 H 0.085 0.915 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 7.857 -22.220 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.180 1.180 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.037 3.963 14 N -0.378 5.378 15 C 0.399 3.601 16 O -0.518 6.518 17 N -0.380 5.380 18 C 0.012 3.988 19 H 0.119 0.881 20 C -0.118 4.118 21 N -0.150 5.150 22 O -0.249 6.249 23 C -0.081 4.081 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.004 0.996 31 H 0.005 0.995 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.172 0.828 40 H 0.103 0.897 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.340 7.468 -22.189 23.649 hybrid contribution 0.453 -0.541 1.526 1.681 sum -2.887 6.927 -20.663 21.984 Atomic orbital electron populations 1.21687 0.93648 1.00895 1.01587 1.20712 0.96650 0.96390 0.92726 1.21680 0.99930 0.94530 1.01618 1.18974 0.94336 0.94194 0.92300 1.21627 1.30273 1.12028 0.91048 0.90886 1.25943 0.95700 0.95878 1.02717 1.70124 1.38875 1.25015 1.24017 0.85502 0.78046 0.78834 0.79289 1.18000 1.21138 1.21074 1.21062 0.97552 0.94909 0.82806 1.45025 1.55988 1.33347 1.03478 1.16139 0.79998 0.82595 0.81319 1.90898 1.44842 1.29483 1.86608 1.44975 1.56345 1.33258 1.03377 1.22848 0.99476 0.94233 0.82250 0.88081 1.23917 0.96973 0.98256 0.92647 1.68933 1.19881 1.21978 1.04160 1.92206 1.23899 1.49240 1.59557 1.24401 0.92770 0.94656 0.96277 0.91238 0.92599 0.94543 0.92643 0.94374 0.91136 0.99604 0.99483 0.93192 0.93667 0.93908 0.75217 0.74946 0.87034 0.85994 0.82787 0.89742 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.38 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 4 C 0.04 1.99 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.18 7.65 25.60 0.20 -26.99 16 6 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 8 N -0.94 -56.96 13.29 21.45 0.28 -56.67 16 9 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.16 5.67 4.56 86.38 0.39 6.06 16 14 N -0.72 -19.09 4.96 -478.53 -2.37 -21.47 16 15 C 0.70 19.40 8.56 179.06 1.53 20.93 16 16 O -0.64 -23.60 15.99 -3.96 -0.06 -23.66 16 17 N -0.72 -13.29 5.08 -453.27 -2.30 -15.59 16 18 C 0.12 1.93 3.45 45.95 0.16 2.09 16 19 H 0.10 1.84 7.55 -2.39 -0.02 1.83 16 20 C 0.01 0.12 7.59 86.49 0.66 0.78 16 21 N -0.48 -6.37 8.43 -182.20 -1.54 -7.90 16 22 O -0.24 -4.76 12.76 -54.01 -0.69 -5.45 16 23 C 0.00 -0.01 7.63 72.49 0.55 0.54 16 24 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 25 H 0.05 1.98 6.62 -2.39 -0.02 1.97 16 26 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.05 1.94 6.62 -2.39 -0.02 1.93 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 30 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 8.24 6.18 -92.71 -0.57 7.67 16 36 H 0.41 5.38 8.38 -92.71 -0.78 4.60 16 37 H 0.11 0.98 7.67 -2.38 -0.02 0.96 16 38 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.36 2.99 9.09 -89.70 -0.82 2.17 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.93 8.06 -2.39 -0.02 1.91 16 Total: -1.00 -72.30 329.96 -0.56 -72.86 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -1.11 Total: 15.94 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.21 Total: -3.46 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -5.93 Total: -101.63 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.75 Total: -29.11 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -72.30 -0.56 -72.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338609198.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.177 kcal (2) G-P(sol) polarization free energy of solvation -72.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds