Wall clock time and date at job start Mon Mar 30 2020 01:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00251 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00111 * 3 2 1 6 6 H 1.48500 * 109.47317 * 150.00473 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 N 1.46901 * 109.54309 * 59.81952 * 16 15 14 18 18 C 1.53178 * 109.54326 * 299.55298 * 16 15 14 19 19 C 1.53095 * 109.16788 * 183.15203 * 18 16 15 20 20 O 1.42904 * 109.41112 * 57.60798 * 19 18 16 21 21 C 1.42901 * 114.10035 * 298.84195 * 20 19 18 22 22 C 1.53099 * 109.41569 * 61.16072 * 21 20 19 23 23 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 25 25 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 26 26 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 27 27 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 28 28 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 29 29 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 30 30 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 31 31 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 32 32 H 1.00902 * 111.00020 * 299.99928 * 17 16 15 33 33 H 1.00895 * 111.00057 * 63.96087 * 17 16 15 34 34 H 1.09001 * 109.52576 * 303.05880 * 18 16 15 35 35 H 1.09000 * 109.52259 * 63.24616 * 18 16 15 36 36 H 1.08999 * 109.47956 * 297.62885 * 19 18 16 37 37 H 1.08991 * 109.49246 * 177.59736 * 19 18 16 38 38 H 1.08999 * 109.48367 * 301.17913 * 21 20 19 39 39 H 1.09000 * 109.49603 * 181.14847 * 21 20 19 40 40 H 1.08996 * 109.52582 * 182.48567 * 22 21 20 41 41 H 1.09001 * 109.52132 * 62.29380 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 6 1.2508 -9.6968 0.0068 17 7 0.4031 -9.6231 -1.1906 18 6 0.3761 -9.6182 1.2618 19 6 -0.5614 -10.8281 1.2976 20 8 0.2121 -12.0293 1.2699 21 6 1.0142 -12.1799 0.0968 22 6 2.0150 -11.0244 0.0128 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.8713 -3.6047 0.8890 27 1 2.8725 -3.6040 -0.8911 28 1 0.5426 -4.9308 -0.0020 29 1 0.5426 -7.2652 -0.0034 30 1 2.8721 -8.5954 -0.8871 31 1 2.8713 -8.5880 0.8928 32 1 -0.1135 -8.7567 -1.2152 33 1 0.9511 -9.7414 -2.0295 34 1 1.0099 -9.6223 2.1486 35 1 -0.2131 -8.7015 1.2384 36 1 -1.2225 -10.8014 0.4314 37 1 -1.1567 -10.8000 2.2102 38 1 0.3737 -12.1709 -0.7851 39 1 1.5541 -13.1256 0.1443 40 1 2.5979 -11.1132 -0.9039 41 1 2.6820 -11.0568 0.8743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348307453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:37 Heat of formation + Delta-G solvation = -92.459394 kcal Electronic energy + Delta-G solvation = -20943.469836 eV Core-core repulsion = 17664.593516 eV Total energy + Delta-G solvation = -3278.876320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42913 -39.30049 -36.63405 -34.84928 -33.50898 -32.76860 -31.41355 -30.31612 -29.66363 -27.18945 -24.66832 -23.98932 -22.83984 -21.06624 -20.61250 -19.65519 -18.26537 -16.55771 -16.36033 -16.22689 -16.08845 -15.96780 -15.41372 -15.08871 -14.77232 -14.53275 -14.11065 -13.70237 -13.56241 -13.16220 -12.99211 -12.65234 -12.39238 -12.34090 -12.29553 -11.58415 -11.21659 -11.05381 -10.87591 -10.65416 -10.59240 -10.35127 -10.02280 -9.94809 -9.59477 -9.29166 -9.14292 -9.03621 -8.51576 -8.30263 -6.11368 -4.14098 2.91716 3.28243 3.34481 3.39044 3.51351 3.67500 4.05058 4.24509 4.37333 4.40441 4.49458 4.62813 4.76718 5.04315 5.19474 5.23452 5.25858 5.29729 5.41290 5.43735 5.48518 5.62007 5.69064 5.77059 5.91255 6.24294 6.35808 6.44550 6.71540 6.74075 6.94124 6.98973 7.00689 7.12721 7.53187 7.60045 7.87602 8.22260 8.36071 8.88909 8.94076 9.50822 11.00321 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.047744 B = 0.002824 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.319228 B = 9912.422215 C =10208.836236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.698 3.302 13 O -0.597 6.597 14 N -0.753 5.753 15 C 0.114 3.886 16 C 0.107 3.893 17 N -0.834 5.834 18 C -0.142 4.142 19 C 0.069 3.931 20 O -0.387 6.387 21 C 0.070 3.930 22 C -0.140 4.140 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.393 0.607 29 H 0.390 0.610 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.342 0.658 33 H 0.345 0.655 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -23.137 -0.536 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.398 3.602 13 O -0.475 6.475 14 N -0.411 5.411 15 C -0.013 4.013 16 C 0.013 3.987 17 N -0.365 5.365 18 C -0.180 4.180 19 C -0.008 4.008 20 O -0.305 6.305 21 C -0.007 4.007 22 C -0.179 4.179 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.226 0.774 29 H 0.225 0.775 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.481 -23.758 -0.089 23.804 hybrid contribution 0.160 2.161 -0.493 2.223 sum -1.321 -21.597 -0.582 21.645 Atomic orbital electron populations 1.69954 1.06097 1.26888 1.50411 1.24995 0.94902 0.99429 0.94974 0.86503 0.79848 0.82951 0.78209 1.20548 1.21153 1.19712 1.21050 0.93275 0.90352 1.51324 0.92221 1.19322 0.94225 0.91071 0.97783 1.21605 0.95658 0.80379 1.00651 1.45539 1.09808 1.05333 1.78414 1.16067 0.85650 0.80466 0.78067 1.90898 1.11781 1.86632 1.58216 1.45106 1.09177 1.04763 1.82098 1.21901 0.94558 0.82165 1.02704 1.21086 0.92028 0.93894 0.91646 1.58996 1.30803 1.42555 1.04148 1.22208 0.99145 0.99621 0.97033 1.22473 0.92705 0.83429 1.02176 1.87896 1.59956 1.40810 1.41874 1.22441 0.92435 0.97144 0.88650 1.22164 0.98471 0.93951 1.03318 0.92839 0.96000 0.95976 0.92772 0.92798 0.77442 0.77546 0.91753 0.91374 0.84440 0.84187 0.90419 0.90862 0.91913 0.89444 0.91962 0.89445 0.90609 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 11 N -0.74 -12.80 5.56 -65.22 -0.36 -13.16 16 12 C 0.70 11.95 8.57 -86.92 -0.74 11.21 16 13 O -0.60 -12.82 16.34 5.28 0.09 -12.74 16 14 N -0.75 -8.85 5.04 -65.23 -0.33 -9.18 16 15 C 0.11 1.19 4.78 -4.04 -0.02 1.17 16 16 C 0.11 0.82 0.57 -131.42 -0.07 0.75 16 17 N -0.83 -5.57 7.67 0.89 0.01 -5.56 16 18 C -0.14 -1.13 4.87 -26.59 -0.13 -1.26 16 19 C 0.07 0.56 6.68 37.21 0.25 0.81 16 20 O -0.39 -3.78 10.77 -35.23 -0.38 -4.16 16 21 C 0.07 0.54 6.68 37.21 0.25 0.78 16 22 C -0.14 -1.02 5.06 -26.59 -0.13 -1.15 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.39 5.79 8.49 -40.82 -0.35 5.45 16 29 H 0.39 3.56 6.34 -40.82 -0.26 3.30 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.34 2.22 7.67 -39.29 -0.30 1.92 16 33 H 0.34 2.15 8.99 -39.29 -0.35 1.80 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.54 6.99 -51.93 -0.36 0.18 16 36 H 0.06 0.51 7.75 -51.93 -0.40 0.11 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -32.60 331.61 -8.07 -40.67 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.62 Total: 5.84 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.18 Total: 2.26 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.05 Total: -53.20 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.29 Total: -16.90 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.60 -8.07 -40.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348307453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.791 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds