Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00251 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00111 * 3 2 1 6 6 H 1.48500 * 109.47317 * 150.00473 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 N 1.46901 * 109.54309 * 59.81952 * 16 15 14 18 18 C 1.53178 * 109.54326 * 299.55298 * 16 15 14 19 19 C 1.53095 * 109.16788 * 183.15203 * 18 16 15 20 20 O 1.42904 * 109.41112 * 57.60798 * 19 18 16 21 21 C 1.42901 * 114.10035 * 298.84195 * 20 19 18 22 22 C 1.53099 * 109.41569 * 61.16072 * 21 20 19 23 23 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 25 25 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 26 26 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 27 27 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 28 28 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 29 29 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 30 30 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 31 31 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 32 32 H 1.00902 * 111.00020 * 299.99928 * 17 16 15 33 33 H 1.00895 * 111.00057 * 63.96087 * 17 16 15 34 34 H 1.09001 * 109.52576 * 303.05880 * 18 16 15 35 35 H 1.09000 * 109.52259 * 63.24616 * 18 16 15 36 36 H 1.08999 * 109.47956 * 297.62885 * 19 18 16 37 37 H 1.08991 * 109.49246 * 177.59736 * 19 18 16 38 38 H 1.08999 * 109.48367 * 301.17913 * 21 20 19 39 39 H 1.09000 * 109.49603 * 181.14847 * 21 20 19 40 40 H 1.08996 * 109.52582 * 182.48567 * 22 21 20 41 41 H 1.09001 * 109.52132 * 62.29380 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 6 1.2508 -9.6968 0.0068 17 7 0.4031 -9.6231 -1.1906 18 6 0.3761 -9.6182 1.2618 19 6 -0.5614 -10.8281 1.2976 20 8 0.2121 -12.0293 1.2699 21 6 1.0142 -12.1799 0.0968 22 6 2.0150 -11.0244 0.0128 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.8713 -3.6047 0.8890 27 1 2.8725 -3.6040 -0.8911 28 1 0.5426 -4.9308 -0.0020 29 1 0.5426 -7.2652 -0.0034 30 1 2.8721 -8.5954 -0.8871 31 1 2.8713 -8.5880 0.8928 32 1 -0.1135 -8.7567 -1.2152 33 1 0.9511 -9.7414 -2.0295 34 1 1.0099 -9.6223 2.1486 35 1 -0.2131 -8.7015 1.2384 36 1 -1.2225 -10.8014 0.4314 37 1 -1.1567 -10.8000 2.2102 38 1 0.3737 -12.1709 -0.7851 39 1 1.5541 -13.1256 0.1443 40 1 2.5979 -11.1132 -0.9039 41 1 2.6820 -11.0568 0.8743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348307453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = -118.684729 kcal Electronic energy + Delta-G solvation = -20944.607052 eV Core-core repulsion = 17664.593516 eV Total energy + Delta-G solvation = -3280.013536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39466 -40.39686 -37.52273 -36.52973 -34.90947 -34.42979 -32.03840 -31.47392 -30.91361 -28.26062 -26.46606 -24.65206 -23.74049 -22.83257 -21.97951 -20.33877 -19.56668 -18.44748 -17.48753 -16.97961 -16.86146 -16.83652 -16.59692 -16.45842 -16.02385 -15.59801 -15.37280 -15.18631 -14.89416 -14.28448 -14.10950 -13.81420 -13.43806 -13.22352 -13.13356 -13.01036 -12.93220 -12.53409 -12.24929 -12.20075 -11.71523 -11.56871 -11.47698 -11.26553 -11.19674 -10.61790 -10.60096 -10.41430 -9.78307 -9.66882 -8.24963 -6.35127 1.41566 1.41975 1.53217 1.68554 2.11185 2.40616 3.07004 3.10044 3.27085 3.43723 3.62206 3.69445 3.86198 4.13855 4.40970 4.44135 4.46569 4.50623 4.57723 4.66926 4.70848 4.73705 4.84725 4.86920 4.89762 5.08500 5.15769 5.28102 5.30006 5.38947 5.49414 5.58289 5.77314 5.95102 6.11727 6.16229 6.37336 6.47350 6.78012 7.06053 7.34291 7.54285 8.86930 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.047744 B = 0.002824 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.319228 B = 9912.422215 C =10208.836236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.731 5.731 12 C 0.697 3.303 13 O -0.641 6.641 14 N -0.728 5.728 15 C 0.115 3.885 16 C 0.120 3.880 17 N -0.829 5.829 18 C -0.142 4.142 19 C 0.069 3.931 20 O -0.407 6.407 21 C 0.069 3.931 22 C -0.139 4.139 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.407 0.593 29 H 0.407 0.593 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.345 0.655 33 H 0.350 0.650 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -23.656 -0.875 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.386 5.386 12 C 0.397 3.603 13 O -0.523 6.523 14 N -0.386 5.386 15 C -0.012 4.012 16 C 0.026 3.974 17 N -0.360 5.360 18 C -0.180 4.180 19 C -0.007 4.007 20 O -0.326 6.326 21 C -0.007 4.007 22 C -0.178 4.178 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.243 0.757 29 H 0.244 0.756 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.787 -24.325 -0.437 24.395 hybrid contribution 0.208 2.246 -0.391 2.289 sum -1.579 -22.079 -0.828 22.151 Atomic orbital electron populations 1.70050 1.07495 1.28013 1.50995 1.25854 0.95800 1.03043 0.94405 0.85455 0.78624 0.78499 0.78538 1.19734 1.20483 1.19142 1.21466 0.93592 0.91955 1.51561 0.92370 1.19118 0.94185 0.91562 0.96391 1.21073 0.94640 0.81168 0.99530 1.45197 1.10367 1.04380 1.78651 1.16178 0.85121 0.81304 0.77717 1.90872 1.13883 1.87339 1.60158 1.44866 1.09976 1.03605 1.80192 1.22040 0.95159 0.82185 1.01775 1.20953 0.91409 0.92890 0.92151 1.58986 1.30402 1.42669 1.03935 1.22202 0.99089 1.00040 0.96649 1.22521 0.92587 0.82913 1.02688 1.87873 1.60401 1.41481 1.42868 1.22542 0.92340 0.97739 0.88092 1.22163 0.98415 0.93405 1.03777 0.92517 0.97203 0.97279 0.93990 0.93861 0.75742 0.75587 0.92276 0.92786 0.84099 0.83572 0.91369 0.90164 0.91662 0.88769 0.91751 0.88281 0.89365 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.89 13.29 21.45 0.28 -53.60 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.25 5.09 29.85 0.15 1.40 16 10 C 0.16 6.92 5.61 86.38 0.48 7.41 16 11 N -0.73 -24.97 5.56 -478.52 -2.66 -27.63 16 12 C 0.70 23.41 8.57 179.05 1.53 24.95 16 13 O -0.64 -27.54 16.34 -4.01 -0.07 -27.61 16 14 N -0.73 -16.13 5.04 -478.54 -2.41 -18.54 16 15 C 0.11 2.29 4.78 86.38 0.41 2.70 16 16 C 0.12 1.65 0.57 3.65 0.00 1.65 16 17 N -0.83 -9.28 7.67 -151.09 -1.16 -10.43 16 18 C -0.14 -2.04 4.87 30.69 0.15 -1.89 16 19 C 0.07 1.02 6.68 72.01 0.48 1.50 16 20 O -0.41 -7.38 10.77 -148.98 -1.60 -8.98 16 21 C 0.07 0.94 6.68 72.02 0.48 1.42 16 22 C -0.14 -1.79 5.06 30.69 0.16 -1.64 16 23 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.41 11.56 8.49 -92.71 -0.79 10.77 16 29 H 0.41 6.55 6.34 -92.71 -0.59 5.96 16 30 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.34 3.63 7.67 -89.69 -0.69 2.94 16 33 H 0.35 3.57 8.99 -89.70 -0.81 2.76 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.03 6.99 -2.39 -0.02 1.01 16 36 H 0.07 0.93 7.75 -2.39 -0.02 0.91 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 0.85 7.75 -2.39 -0.02 0.83 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -69.32 331.61 -2.85 -72.17 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -1.81 Total: 21.02 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.55 Total: 8.13 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -5.95 Total: -110.21 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.67 Total: -36.59 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.32 -2.85 -72.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348307453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.517 kcal (2) G-P(sol) polarization free energy of solvation -69.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds