Wall clock time and date at job start Mon Mar 30 2020 01:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47168 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00363 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99993 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00240 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.46767 * 35.00202 * 16 15 13 18 18 C 1.52998 * 109.47010 * 154.99571 * 16 15 13 19 19 C 1.53000 * 109.46941 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47573 * 300.00440 * 19 18 16 21 21 C 1.53002 * 109.46752 * 59.99576 * 20 19 18 22 22 H 1.09000 * 109.46894 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.47229 * 60.00834 * 21 20 19 24 24 C 1.52994 * 109.47049 * 275.00181 * 16 15 13 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 31 31 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 32 32 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 33 33 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 34 34 H 0.97005 * 119.99841 * 0.02562 * 15 13 12 35 35 H 1.09000 * 109.47488 * 300.00544 * 18 16 15 36 36 H 1.09002 * 109.46840 * 60.00676 * 18 16 15 37 37 H 1.09002 * 109.46796 * 60.00656 * 19 18 16 38 38 H 1.09003 * 109.46892 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47555 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47236 * 299.99946 * 20 19 18 41 41 H 1.09002 * 109.47353 * 299.99662 * 24 16 15 42 42 H 1.08994 * 109.47620 * 60.00064 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 6 1.7209 -7.4551 -0.0018 14 8 0.5081 -7.4552 -0.0009 15 7 2.3948 -8.6223 -0.0029 16 6 1.6623 -9.8911 -0.0023 17 1 0.7509 -9.7847 -0.5907 18 6 2.5387 -10.9862 -0.6133 19 6 1.7740 -12.3114 -0.6121 20 6 1.4123 -12.6903 0.8254 21 6 0.5358 -11.5950 1.4363 22 1 0.2785 -11.8647 2.4606 23 9 -0.6343 -11.4589 0.6815 24 6 1.3001 -10.2702 1.4350 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 0.8533 -5.0451 0.8886 31 1 0.8539 -5.0446 -0.8913 32 1 3.1010 -6.0919 -0.8918 33 1 3.1012 -6.0927 0.8881 34 1 3.3648 -8.6223 -0.0032 35 1 2.7968 -10.7161 -1.6373 36 1 3.4501 -11.0927 -0.0249 37 1 0.8624 -12.2053 -1.2003 38 1 2.3986 -13.0917 -1.0470 39 1 0.8678 -13.6346 0.8263 40 1 2.3238 -12.7964 1.4136 41 1 2.2114 -10.3766 2.0234 42 1 0.6756 -9.4900 1.8702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349430822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:25 Heat of formation + Delta-G solvation = -135.696358 kcal Electronic energy + Delta-G solvation = -20525.394253 eV Core-core repulsion = 17224.723076 eV Total energy + Delta-G solvation = -3300.671177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.86977 -39.96641 -37.87310 -34.88872 -34.14611 -32.59415 -30.90739 -30.34583 -29.04592 -25.62388 -23.33065 -23.04576 -21.87395 -20.44186 -19.99023 -19.80790 -17.30018 -16.70545 -16.13083 -16.01733 -15.69807 -15.41285 -15.29980 -14.90232 -14.42642 -13.91192 -13.77152 -13.45803 -13.08383 -12.74506 -12.63077 -12.53648 -12.07005 -11.91696 -11.66042 -11.58339 -11.44250 -11.19379 -10.94976 -10.82283 -10.59173 -10.51692 -10.49325 -10.37904 -9.73417 -9.58257 -9.18987 -9.14104 -8.96213 -8.28065 -5.92928 -3.95517 2.75836 3.07842 3.36707 3.41003 3.43261 4.11681 4.17764 4.34710 4.45837 4.50831 4.61054 4.73757 4.86893 4.92397 5.01370 5.05796 5.17659 5.35193 5.40083 5.42419 5.43606 5.48713 5.60279 5.68375 5.71495 5.88450 5.90315 6.00149 6.17157 6.33532 6.38446 6.58222 6.87271 7.05473 7.22942 7.47292 7.76365 7.92996 8.08705 8.31256 8.50318 9.12088 9.67875 11.18407 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.051623 B = 0.002559 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.265936 B =10937.480276 C =11234.570702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.531 6.531 15 N -0.736 5.736 16 C 0.144 3.856 17 H 0.093 0.907 18 C -0.127 4.127 19 C -0.118 4.118 20 C -0.147 4.147 21 C 0.095 3.905 22 H 0.084 0.916 23 F -0.209 7.209 24 C -0.158 4.158 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.399 0.601 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.695 -27.938 1.570 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.407 6.407 15 N -0.388 5.388 16 C 0.039 3.961 17 H 0.111 0.889 18 C -0.165 4.165 19 C -0.156 4.156 20 C -0.185 4.185 21 C 0.058 3.942 22 H 0.102 0.898 23 F -0.190 7.190 24 C -0.197 4.197 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.612 -27.790 1.543 28.608 hybrid contribution 0.909 0.933 0.051 1.304 sum 7.521 -26.857 1.594 27.936 Atomic orbital electron populations 1.69969 1.06050 1.26610 1.50857 1.25048 0.94844 0.99219 0.95478 0.86668 0.79568 0.83264 0.78531 1.21323 1.20293 1.20295 1.21250 0.92931 0.91229 1.50501 0.92823 1.19093 0.94063 0.91253 0.97313 1.21648 0.99065 0.94035 1.00017 1.21451 0.97033 0.92715 1.02962 1.21795 1.00078 0.92069 1.03910 1.21137 0.88531 0.85624 0.74876 1.90723 1.14202 1.87596 1.48147 1.46161 1.10056 1.05441 1.77170 1.20846 0.96521 0.82953 0.95764 0.88885 1.21832 0.98553 0.94424 1.01701 1.21453 1.01027 0.96619 0.96470 1.22171 1.00423 0.98395 0.97497 1.21502 0.82024 0.96005 0.94650 0.89847 1.92830 1.50507 1.97003 1.78694 1.22533 1.01399 0.97200 0.98572 0.92988 0.96608 0.96587 0.93507 0.93513 0.91833 0.91810 0.89183 0.89215 0.76744 0.90859 0.91271 0.90938 0.90971 0.90624 0.90057 0.90063 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.29 55.43 0.74 -27.10 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.85 5.70 -27.89 -0.16 -2.01 16 13 C 0.51 7.18 7.79 -10.99 -0.09 7.09 16 14 O -0.53 -9.93 15.64 5.56 0.09 -9.85 16 15 N -0.74 -7.27 5.08 -53.81 -0.27 -7.54 16 16 C 0.14 1.39 2.33 -67.93 -0.16 1.23 16 17 H 0.09 1.20 7.24 -51.93 -0.38 0.83 16 18 C -0.13 -0.82 5.39 -26.73 -0.14 -0.97 16 19 C -0.12 -0.72 5.80 -26.73 -0.16 -0.88 16 20 C -0.15 -0.84 5.72 -26.73 -0.15 -0.99 16 21 C 0.10 0.76 4.12 -26.76 -0.11 0.65 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 23 F -0.21 -2.44 16.05 2.25 0.04 -2.40 16 24 C -0.16 -1.41 5.29 -26.76 -0.14 -1.56 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.40 2.68 8.60 -40.82 -0.35 2.32 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.55 7.80 -51.93 -0.41 0.15 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -34.57 342.14 -8.63 -43.20 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.43 Total: -3.08 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.91 Total: -15.45 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.46 Total: -34.64 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.57 -8.63 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349430822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.496 kcal (2) G-P(sol) polarization free energy of solvation -34.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds