Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47166 * 2 1 4 4 C 1.52999 * 109.46812 * 305.65245 * 3 2 1 5 5 C 1.52995 * 109.47463 * 294.51206 * 4 3 2 6 6 C 1.52996 * 109.46918 * 65.65383 * 3 2 1 7 7 N 1.46500 * 109.47199 * 65.00382 * 6 3 2 8 8 C 1.46501 * 120.00111 * 89.99615 * 7 6 3 9 9 C 1.50707 * 109.47054 * 90.00037 * 8 7 6 10 10 H 1.08004 * 119.99998 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99882 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99683 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99911 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47112 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47076 * 120.00008 * 13 11 9 16 16 H 1.48502 * 109.46763 * 240.00444 * 13 11 9 17 17 C 1.34781 * 119.99774 * 269.99474 * 7 6 3 18 18 O 1.21278 * 120.00065 * 359.97438 * 17 7 6 19 19 C 1.50697 * 119.99616 * 180.02562 * 17 7 6 20 20 H 1.08995 * 115.55511 * 325.66986 * 19 17 7 21 21 C 1.53002 * 117.49637 * 180.02562 * 19 17 7 22 22 C 1.53001 * 60.00017 * 252.51075 * 21 19 17 23 23 H 1.09009 * 117.49541 * 252.51205 * 22 21 19 24 24 F 1.39897 * 117.50143 * 107.49012 * 22 21 19 25 25 H 1.09007 * 109.46607 * 66.78131 * 1 2 3 26 26 H 1.09004 * 109.47298 * 186.77733 * 1 2 3 27 27 H 1.08997 * 109.47465 * 306.78066 * 1 2 3 28 28 H 1.08994 * 109.47557 * 239.99327 * 2 1 3 29 29 H 1.09004 * 109.46447 * 119.99368 * 2 1 3 30 30 H 1.09001 * 109.47035 * 185.65292 * 3 2 1 31 31 H 1.09008 * 109.46921 * 54.51440 * 4 3 2 32 32 H 1.08999 * 109.46745 * 174.50811 * 4 3 2 33 33 H 1.09002 * 109.47255 * 175.60006 * 5 4 3 34 34 H 1.09003 * 109.46922 * 295.60153 * 5 4 3 35 35 H 1.09006 * 109.47110 * 55.60028 * 5 4 3 36 36 H 1.09006 * 109.46849 * 185.00092 * 6 3 2 37 37 H 1.08996 * 109.47569 * 305.00006 * 6 3 2 38 38 H 1.08996 * 109.46901 * 209.99433 * 8 7 6 39 39 H 1.08996 * 109.47311 * 330.00212 * 8 7 6 40 40 H 0.96999 * 119.99447 * 179.97438 * 12 11 9 41 41 H 1.09002 * 117.49671 * 359.97438 * 21 19 17 42 42 H 1.09003 * 117.50293 * 144.99659 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4173 2.2035 -1.1721 5 6 1.9174 1.6086 -2.4899 6 6 1.6493 2.1215 1.3142 7 7 2.3409 1.4660 2.4270 8 6 3.6576 1.9448 2.8552 9 6 3.4871 3.0027 3.9149 10 1 2.4971 3.2893 4.2376 11 6 4.5952 3.6038 4.4734 12 7 5.8008 3.2544 4.0809 13 14 4.3840 4.9146 5.7875 14 1 2.9374 5.1246 6.0491 15 1 5.0548 4.4751 7.0372 16 1 4.9918 6.1864 5.3202 17 6 1.7657 0.4224 3.0568 18 8 0.6755 0.0263 2.7027 19 6 2.4769 -0.2515 4.2018 20 1 3.5630 -0.2942 4.1210 21 6 1.7720 -1.4308 4.8752 22 6 1.8778 -0.0876 5.6001 23 1 2.5700 -0.0219 6.4397 24 9 0.7118 0.6765 5.7178 25 1 -0.3633 0.4052 -0.9445 26 1 -0.3634 -1.0205 0.1213 27 1 -0.3634 0.6153 0.8231 28 1 1.8934 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 3.1253 1.4442 -0.1012 31 1 0.3315 2.1192 -1.1243 32 1 1.7029 3.2539 -1.1161 33 1 1.4147 2.0985 -3.3238 34 1 2.9933 1.7628 -2.5730 35 1 1.7007 0.5405 -2.5118 36 1 1.9340 3.1731 1.2784 37 1 0.5719 2.0415 1.4583 38 1 4.2322 1.1126 3.2617 39 1 4.1857 2.3682 2.0009 40 1 6.5803 3.6776 4.4735 41 1 0.7938 -1.7189 4.4902 42 1 2.3945 -2.2490 5.2375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351154005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = -77.452267 kcal Electronic energy + Delta-G solvation = -22416.103102 eV Core-core repulsion = 19117.957578 eV Total energy + Delta-G solvation = -3298.145524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.11802 -39.54128 -37.11200 -35.06111 -34.67118 -32.47143 -30.77681 -28.60755 -26.93018 -24.87963 -23.40268 -23.04184 -21.99347 -21.93136 -18.70099 -18.11677 -17.11202 -16.58843 -15.71969 -15.61965 -15.30234 -14.87624 -14.61785 -14.22429 -14.01263 -13.46010 -13.15135 -12.88540 -12.59309 -12.46050 -12.31443 -12.14366 -11.77916 -11.66263 -11.55553 -11.29601 -11.12244 -10.95895 -10.86707 -10.66244 -10.26627 -10.12747 -10.02580 -10.00754 -9.87404 -9.66249 -9.61319 -8.99728 -8.54939 -7.64801 -6.18045 -4.24344 3.14938 3.21534 3.30532 3.36961 3.82057 4.11793 4.34180 4.66134 5.00724 5.08278 5.15257 5.17603 5.21651 5.29303 5.41320 5.52167 5.63623 5.70733 5.72367 5.88706 6.02072 6.02622 6.07722 6.15799 6.17827 6.20480 6.28833 6.40650 6.42772 6.45241 6.58222 6.66924 6.79473 6.82243 6.97028 7.17898 7.57096 7.78289 8.07208 8.36006 8.82085 9.05787 9.43594 10.88577 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.007538 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.236892 B = 3713.714283 C = 5101.407105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.103 4.103 4 C -0.119 4.119 5 C -0.150 4.150 6 C 0.123 3.877 7 N -0.587 5.587 8 C 0.238 3.762 9 C -0.531 4.531 10 H 0.061 0.939 11 C 0.064 3.936 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.546 3.454 18 O -0.559 6.559 19 C -0.185 4.185 20 H 0.137 0.863 21 C -0.174 4.174 22 C 0.053 3.947 23 H 0.136 0.864 24 F -0.179 7.179 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.112 0.888 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 -6.179 -4.866 9.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.122 4.122 4 C -0.157 4.157 5 C -0.207 4.207 6 C 0.000 4.000 7 N -0.316 5.316 8 C 0.118 3.882 9 C -0.570 4.570 10 H 0.080 0.920 11 C -0.138 4.138 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.209 1.209 17 C 0.334 3.666 18 O -0.440 6.440 19 C -0.206 4.206 20 H 0.155 0.845 21 C -0.212 4.212 22 C 0.016 3.984 23 H 0.153 0.847 24 F -0.159 7.159 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.130 0.870 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.225 -6.286 -5.027 9.596 hybrid contribution 0.288 0.969 0.776 1.274 sum -4.937 -5.317 -4.251 8.409 Atomic orbital electron populations 1.21770 0.95876 1.01314 1.00844 1.21449 0.96450 0.95893 1.00876 1.21584 1.00341 0.95703 0.94605 1.21552 1.00751 0.99306 0.94109 1.21779 1.00927 1.01042 0.96953 1.21416 0.97613 0.96215 0.84773 1.48052 1.21512 1.30318 1.31679 1.19438 0.77939 0.95140 0.95683 1.21553 0.93184 1.21083 1.21171 0.92028 1.24921 0.95005 0.96961 0.96919 1.69934 0.97653 1.42726 1.42914 0.86500 0.78484 0.81477 0.81448 1.19587 1.20839 1.20892 1.19141 0.85004 0.80250 0.82210 1.90588 1.21082 1.65616 1.66746 1.22932 1.01661 1.02098 0.93898 0.84544 1.23645 1.03723 0.91574 1.02231 1.21914 0.86354 0.94203 0.95918 0.84704 1.92809 1.49666 1.76601 1.96862 0.94173 0.94015 0.90973 0.93450 0.91832 0.91254 0.91634 0.92153 0.93325 0.92964 0.92618 0.90681 0.90717 0.94537 0.94684 0.92662 0.86975 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.14 37.16 0.30 -1.88 16 2 C -0.11 -1.74 4.81 -26.73 -0.13 -1.87 16 3 C -0.10 -1.63 2.37 -90.62 -0.21 -1.85 16 4 C -0.12 -1.59 5.07 -26.73 -0.14 -1.72 16 5 C -0.15 -1.75 9.77 37.16 0.36 -1.39 16 6 C 0.12 2.29 4.90 -4.04 -0.02 2.27 16 7 N -0.59 -12.25 2.34 -175.06 -0.41 -12.66 16 8 C 0.24 5.57 4.99 -5.19 -0.03 5.54 16 9 C -0.53 -13.81 9.39 -34.44 -0.32 -14.13 16 10 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -24.33 13.29 55.43 0.74 -23.60 16 13 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C 0.55 11.25 5.64 -10.98 -0.06 11.19 16 18 O -0.56 -12.00 12.03 5.56 0.07 -11.93 16 19 C -0.18 -3.35 5.29 -91.77 -0.49 -3.84 16 20 H 0.14 2.42 6.44 -51.93 -0.33 2.09 16 21 C -0.17 -2.58 10.03 -26.73 -0.27 -2.85 16 22 C 0.05 0.90 7.83 -26.73 -0.21 0.69 16 23 H 0.14 1.95 8.14 -51.92 -0.42 1.53 16 24 F -0.18 -3.66 17.13 2.25 0.04 -3.62 16 25 H 0.04 0.54 6.63 -51.93 -0.34 0.20 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.27 4.86 -51.93 -0.25 1.01 16 28 H 0.05 0.68 6.76 -51.93 -0.35 0.33 16 29 H 0.06 1.16 5.57 -51.93 -0.29 0.87 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.85 6.18 -51.92 -0.32 0.53 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.65 6.51 -51.93 -0.34 0.31 16 36 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 37 H 0.07 1.42 5.66 -51.93 -0.29 1.13 16 38 H 0.04 0.87 5.99 -51.93 -0.31 0.56 16 39 H 0.04 0.86 8.07 -51.93 -0.42 0.45 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.11 1.78 7.67 -51.93 -0.40 1.38 16 42 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -28.45 330.87 -7.48 -35.94 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.58 Total: 3.46 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.30 Total: -8.22 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.33 Total: -36.26 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.45 -7.48 -35.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351154005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.514 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds