Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47166 * 2 1 4 4 C 1.52999 * 109.46812 * 305.65245 * 3 2 1 5 5 C 1.52995 * 109.47463 * 294.51206 * 4 3 2 6 6 C 1.52996 * 109.46918 * 65.65383 * 3 2 1 7 7 N 1.46500 * 109.47199 * 65.00382 * 6 3 2 8 8 C 1.46501 * 120.00111 * 89.99615 * 7 6 3 9 9 C 1.50707 * 109.47054 * 90.00037 * 8 7 6 10 10 H 1.08004 * 119.99998 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99882 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99683 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99911 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47112 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47076 * 120.00008 * 13 11 9 16 16 H 1.48502 * 109.46763 * 240.00444 * 13 11 9 17 17 C 1.34781 * 119.99774 * 269.99474 * 7 6 3 18 18 O 1.21278 * 120.00065 * 359.97438 * 17 7 6 19 19 C 1.50697 * 119.99616 * 180.02562 * 17 7 6 20 20 H 1.08995 * 115.55511 * 325.66986 * 19 17 7 21 21 C 1.53002 * 117.49637 * 180.02562 * 19 17 7 22 22 C 1.53001 * 60.00017 * 252.51075 * 21 19 17 23 23 H 1.09009 * 117.49541 * 252.51205 * 22 21 19 24 24 F 1.39897 * 117.50143 * 107.49012 * 22 21 19 25 25 H 1.09007 * 109.46607 * 66.78131 * 1 2 3 26 26 H 1.09004 * 109.47298 * 186.77733 * 1 2 3 27 27 H 1.08997 * 109.47465 * 306.78066 * 1 2 3 28 28 H 1.08994 * 109.47557 * 239.99327 * 2 1 3 29 29 H 1.09004 * 109.46447 * 119.99368 * 2 1 3 30 30 H 1.09001 * 109.47035 * 185.65292 * 3 2 1 31 31 H 1.09008 * 109.46921 * 54.51440 * 4 3 2 32 32 H 1.08999 * 109.46745 * 174.50811 * 4 3 2 33 33 H 1.09002 * 109.47255 * 175.60006 * 5 4 3 34 34 H 1.09003 * 109.46922 * 295.60153 * 5 4 3 35 35 H 1.09006 * 109.47110 * 55.60028 * 5 4 3 36 36 H 1.09006 * 109.46849 * 185.00092 * 6 3 2 37 37 H 1.08996 * 109.47569 * 305.00006 * 6 3 2 38 38 H 1.08996 * 109.46901 * 209.99433 * 8 7 6 39 39 H 1.08996 * 109.47311 * 330.00212 * 8 7 6 40 40 H 0.96999 * 119.99447 * 179.97438 * 12 11 9 41 41 H 1.09002 * 117.49671 * 359.97438 * 21 19 17 42 42 H 1.09003 * 117.50293 * 144.99659 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4173 2.2035 -1.1721 5 6 1.9174 1.6086 -2.4899 6 6 1.6493 2.1215 1.3142 7 7 2.3409 1.4660 2.4270 8 6 3.6576 1.9448 2.8552 9 6 3.4871 3.0027 3.9149 10 1 2.4971 3.2893 4.2376 11 6 4.5952 3.6038 4.4734 12 7 5.8008 3.2544 4.0809 13 14 4.3840 4.9146 5.7875 14 1 2.9374 5.1246 6.0491 15 1 5.0548 4.4751 7.0372 16 1 4.9918 6.1864 5.3202 17 6 1.7657 0.4224 3.0568 18 8 0.6755 0.0263 2.7027 19 6 2.4769 -0.2515 4.2018 20 1 3.5630 -0.2942 4.1210 21 6 1.7720 -1.4308 4.8752 22 6 1.8778 -0.0876 5.6001 23 1 2.5700 -0.0219 6.4397 24 9 0.7118 0.6765 5.7178 25 1 -0.3633 0.4052 -0.9445 26 1 -0.3634 -1.0205 0.1213 27 1 -0.3634 0.6153 0.8231 28 1 1.8934 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 3.1253 1.4442 -0.1012 31 1 0.3315 2.1192 -1.1243 32 1 1.7029 3.2539 -1.1161 33 1 1.4147 2.0985 -3.3238 34 1 2.9933 1.7628 -2.5730 35 1 1.7007 0.5405 -2.5118 36 1 1.9340 3.1731 1.2784 37 1 0.5719 2.0415 1.4583 38 1 4.2322 1.1126 3.2617 39 1 4.1857 2.3682 2.0009 40 1 6.5803 3.6776 4.4735 41 1 0.7938 -1.7189 4.4902 42 1 2.3945 -2.2490 5.2375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351154005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = -91.289153 kcal Electronic energy + Delta-G solvation = -22416.703114 eV Core-core repulsion = 19117.957578 eV Total energy + Delta-G solvation = -3298.745536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.61276 -41.10561 -38.44957 -36.44074 -36.39699 -34.40750 -31.92505 -30.13983 -28.73055 -26.23783 -25.05618 -24.52666 -23.32152 -23.23577 -20.01830 -19.70716 -18.64798 -18.52716 -17.24681 -17.17772 -16.66913 -16.40763 -16.26079 -15.73225 -15.49131 -14.90979 -14.42099 -14.31905 -14.26652 -13.88644 -13.80749 -13.51605 -13.43716 -12.98812 -12.89454 -12.78342 -12.74824 -12.50305 -12.36662 -12.12713 -11.99507 -11.68191 -11.38236 -11.29784 -11.26231 -11.20906 -11.04172 -10.67985 -10.48848 -9.36012 -8.20319 -6.33951 1.37506 1.41516 1.51891 1.62275 2.25976 2.43349 2.75875 3.09222 3.28839 3.63108 3.71498 3.92176 3.95605 4.05006 4.12254 4.21272 4.41303 4.47006 4.58968 4.66830 4.73107 4.77997 4.82834 4.87365 4.92169 4.96033 5.01091 5.09816 5.15297 5.16432 5.23255 5.32862 5.35504 5.44709 5.53568 5.66387 5.68857 5.89870 6.07447 6.59374 6.83597 7.33228 7.45437 8.84849 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.007538 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.236892 B = 3713.714283 C = 5101.407105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 C -0.094 4.094 4 C -0.115 4.115 5 C -0.146 4.146 6 C 0.120 3.880 7 N -0.593 5.593 8 C 0.256 3.744 9 C -0.540 4.540 10 H 0.043 0.957 11 C 0.026 3.974 12 N -0.917 5.917 13 Si 0.950 3.050 14 H -0.278 1.278 15 H -0.273 1.273 16 H -0.278 1.278 17 C 0.539 3.461 18 O -0.572 6.572 19 C -0.213 4.213 20 H 0.138 0.862 21 C -0.137 4.137 22 C 0.037 3.963 23 H 0.163 0.837 24 F -0.203 7.203 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.018 0.982 40 H 0.268 0.732 41 H 0.102 0.898 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 -6.743 -4.999 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C -0.114 4.114 4 C -0.153 4.153 5 C -0.203 4.203 6 C -0.002 4.002 7 N -0.322 5.322 8 C 0.135 3.865 9 C -0.578 4.578 10 H 0.061 0.939 11 C -0.174 4.174 12 N -0.557 5.557 13 Si 0.776 3.224 14 H -0.203 1.203 15 H -0.198 1.198 16 H -0.203 1.203 17 C 0.328 3.672 18 O -0.454 6.454 19 C -0.235 4.235 20 H 0.156 0.844 21 C -0.174 4.174 22 C 0.001 3.999 23 H 0.180 0.820 24 F -0.183 7.183 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.255 -6.857 -5.167 10.066 hybrid contribution 0.272 1.136 0.800 1.416 sum -4.983 -5.721 -4.367 8.754 Atomic orbital electron populations 1.21672 0.95351 1.00888 1.01034 1.21388 0.96782 0.95544 1.00438 1.21491 0.99718 0.96008 0.94146 1.21532 1.00898 0.99068 0.93814 1.21749 1.00992 1.01232 0.96324 1.21527 0.97026 0.95986 0.85699 1.48060 1.20862 1.30743 1.32510 1.19054 0.78968 0.94257 0.94246 1.21636 0.92388 1.21903 1.21913 0.93853 1.25538 0.94720 0.98572 0.98562 1.70002 0.98192 1.43636 1.43840 0.85625 0.77917 0.79356 0.79505 1.20277 1.19802 1.20347 1.19587 0.85019 0.80019 0.82614 1.90570 1.21632 1.65931 1.67244 1.22984 1.01793 1.04959 0.93727 0.84440 1.23748 1.03252 0.91274 0.99117 1.22426 0.85964 0.95466 0.96031 0.81951 1.92755 1.51109 1.77540 1.96938 0.91863 0.94093 0.93402 0.91542 0.94512 0.92475 0.91044 0.92072 0.91471 0.93126 0.92345 0.91641 0.91306 0.94935 0.96400 0.92293 0.87969 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.14 71.98 0.59 -3.40 16 2 C -0.10 -3.26 4.81 30.59 0.15 -3.11 16 3 C -0.09 -2.99 2.37 -10.79 -0.03 -3.02 16 4 C -0.12 -2.93 5.07 30.59 0.16 -2.77 16 5 C -0.15 -3.09 9.77 71.98 0.70 -2.39 16 6 C 0.12 4.61 4.90 86.38 0.42 5.03 16 7 N -0.59 -25.47 2.34 -826.15 -1.94 -27.40 16 8 C 0.26 12.28 4.99 85.63 0.43 12.71 16 9 C -0.54 -28.52 9.39 25.60 0.24 -28.28 16 10 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 11 C 0.03 1.39 5.46 84.65 0.46 1.85 16 12 N -0.92 -49.89 13.29 21.45 0.28 -49.60 16 13 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 C 0.54 22.57 5.64 87.66 0.49 23.06 16 18 O -0.57 -24.91 12.03 -3.02 -0.04 -24.94 16 19 C -0.21 -7.67 5.29 -11.54 -0.06 -7.73 16 20 H 0.14 4.85 6.44 -2.39 -0.02 4.84 16 21 C -0.14 -3.77 10.03 30.59 0.31 -3.46 16 22 C 0.04 1.23 7.83 30.59 0.24 1.47 16 23 H 0.16 4.37 8.14 -2.38 -0.02 4.35 16 24 F -0.20 -8.30 17.13 44.97 0.77 -7.53 16 25 H 0.06 1.58 6.63 -2.38 -0.02 1.57 16 26 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.05 1.68 4.86 -2.39 -0.01 1.67 16 28 H 0.07 1.82 6.76 -2.39 -0.02 1.80 16 29 H 0.04 1.34 5.57 -2.38 -0.01 1.33 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.73 6.18 -2.38 -0.01 1.72 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.21 6.51 -2.38 -0.02 1.19 16 36 H 0.07 2.57 8.07 -2.38 -0.02 2.55 16 37 H 0.07 2.70 5.66 -2.39 -0.01 2.69 16 38 H 0.03 1.59 5.99 -2.39 -0.01 1.58 16 39 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 40 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.10 3.09 7.67 -2.39 -0.02 3.07 16 42 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -61.22 330.87 6.21 -55.01 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 1.00 Total: 20.21 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 4.10 Total: -10.01 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -1.65 Total: -77.00 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.77 Total: -7.53 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -61.22 6.21 -55.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351154005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.278 kcal (2) G-P(sol) polarization free energy of solvation -61.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds