Wall clock time and date at job start Mon Mar 30 2020 01:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48506 * 109.46768 * 85.17875 * 3 2 1 5 5 H 1.48503 * 109.47148 * 325.18389 * 3 2 1 6 6 H 1.48494 * 109.47408 * 205.18179 * 3 2 1 7 7 C 1.39945 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00024 * 197.42656 * 7 2 1 9 9 C 1.41392 * 120.00395 * 17.43692 * 7 2 1 10 10 C 1.40715 * 120.24145 * 24.85705 * 9 7 2 11 11 C 1.37619 * 119.74233 * 179.72309 * 10 9 7 12 12 C 1.38644 * 120.24931 * 0.53879 * 11 10 9 13 13 C 1.50700 * 119.75039 * 179.74085 * 12 11 10 14 14 N 1.46904 * 109.46833 * 270.02240 * 13 12 11 15 15 C 1.46904 * 110.99740 * 180.02562 * 14 13 12 16 16 H 1.08996 * 112.78431 * 335.93596 * 15 14 13 17 17 C 1.53624 * 113.53218 * 106.97072 * 15 14 13 18 18 C 1.53817 * 87.64244 * 90.52240 * 17 15 14 19 19 H 1.09001 * 116.25396 * 266.20403 * 18 17 15 20 20 C 1.53909 * 112.99126 * 130.57793 * 18 17 15 21 21 C 1.54238 * 106.66948 * 266.12152 * 20 18 17 22 22 C 1.54881 * 104.20000 * 23.63008 * 21 20 18 23 23 C 1.53516 * 113.52801 * 204.99562 * 15 14 13 24 24 H 1.09000 * 115.95810 * 28.76044 * 23 15 14 25 25 C 1.38632 * 120.49572 * 359.75792 * 12 11 10 26 26 C 1.37611 * 120.25463 * 359.95965 * 25 12 11 27 27 H 0.96991 * 120.00555 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.13332 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.88191 * 180.27755 * 11 10 9 30 30 H 1.08996 * 109.47031 * 30.01464 * 13 12 11 31 31 H 1.08996 * 109.46768 * 150.01970 * 13 12 11 32 32 H 1.00905 * 110.99557 * 303.95036 * 14 13 12 33 33 H 1.08997 * 113.52477 * 205.21762 * 17 15 14 34 34 H 1.09003 * 113.52970 * 335.83490 * 17 15 14 35 35 H 1.08999 * 110.02126 * 146.81408 * 20 18 17 36 36 H 1.09002 * 110.05781 * 25.44578 * 20 18 17 37 37 H 1.09003 * 110.47657 * 264.95620 * 21 20 18 38 38 H 1.08990 * 110.48859 * 142.31522 * 21 20 18 39 39 H 1.09000 * 110.73647 * 203.61961 * 22 21 20 40 40 H 1.09001 * 110.89676 * 80.36681 * 22 21 20 41 41 H 1.08005 * 119.87115 * 179.97438 * 25 12 11 42 42 H 1.08002 * 120.13388 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3878 2.1052 1.3952 5 1 1.4943 2.6212 -0.7994 6 1 3.5869 1.4130 -0.5957 7 6 2.0080 -1.2120 0.0005 8 1 3.0508 -1.2333 0.2807 9 6 1.3498 -2.4085 -0.3658 10 6 0.2192 -2.3679 -1.2026 11 6 -0.4101 -3.5392 -1.5573 12 6 0.0593 -4.7551 -1.0846 13 6 -0.6419 -6.0305 -1.4755 14 7 -1.6934 -6.3315 -0.4948 15 6 -2.3996 -7.5714 -0.8440 16 1 -2.3371 -7.8080 -1.9061 17 6 -2.0504 -8.7548 0.0712 18 6 -3.2234 -8.3248 0.9686 19 1 -2.9770 -7.6662 1.8014 20 6 -4.1645 -9.4888 1.3267 21 6 -5.3026 -9.4739 0.2859 22 6 -4.6896 -8.7474 -0.9370 23 6 -3.8269 -7.6426 -0.2831 24 1 -4.3320 -6.6871 -0.1415 25 6 1.1686 -4.8065 -0.2547 26 6 1.8170 -3.6483 0.1084 27 1 -0.4850 0.8399 -0.0004 28 1 -0.1504 -1.4216 -1.5689 29 1 -1.2753 -3.5110 -2.2031 30 1 -1.0890 -5.9115 -2.4624 31 1 0.0781 -6.8484 -1.4990 32 1 -1.3133 -6.3829 0.4386 33 1 -2.1965 -9.7269 -0.3997 34 1 -1.0770 -8.6602 0.5526 35 1 -4.5720 -9.3449 2.3274 36 1 -3.6251 -10.4347 1.2764 37 1 -6.1610 -8.9209 0.6673 38 1 -5.5902 -10.4912 0.0205 39 1 -5.4715 -8.3100 -1.5578 40 1 -4.0690 -9.4264 -1.5217 41 1 1.5253 -5.7591 0.1081 42 1 2.6813 -3.6906 0.7547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462381481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:32 Heat of formation + Delta-G solvation = 21.188806 kcal Electronic energy + Delta-G solvation = -19929.250602 eV Core-core repulsion = 17066.151700 eV Total energy + Delta-G solvation = -2863.098901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48095 -37.66533 -35.21359 -33.61895 -31.77030 -29.59170 -29.18881 -28.82874 -26.14313 -24.77174 -23.31225 -22.19267 -20.91690 -20.71867 -19.78539 -18.06656 -17.26738 -16.25080 -15.55142 -15.25763 -14.89982 -14.39594 -14.07190 -13.74056 -13.52073 -13.20987 -12.89421 -12.73446 -12.49781 -12.07738 -11.92264 -11.72151 -11.57848 -11.21980 -11.11309 -10.95202 -10.89310 -10.86659 -10.59483 -10.41519 -10.35275 -10.06951 -9.87445 -9.53116 -9.33826 -9.10063 -7.96373 -7.41015 -7.26801 -6.72977 -4.32487 2.76657 3.08071 3.10998 3.12209 3.19921 3.94883 4.26424 4.37020 4.57096 4.64122 4.80098 5.00812 5.16784 5.25300 5.33233 5.48912 5.57944 5.65232 5.70581 5.74241 5.77860 5.83314 5.91253 5.93004 5.96025 5.97518 6.11284 6.26026 6.30859 6.36348 6.38668 6.47550 6.56151 6.98943 7.09937 7.32806 7.39214 7.51451 7.64760 7.78269 7.93539 8.08658 8.18354 8.33315 8.67764 8.92429 9.01044 10.21372 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038125 B = 0.003200 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.245112 B = 8746.922978 C = 8950.964012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.167 4.167 11 C -0.079 4.079 12 C -0.214 4.214 13 C 0.126 3.874 14 N -0.665 5.665 15 C 0.076 3.924 16 H 0.075 0.925 17 C -0.161 4.161 18 C -0.113 4.113 19 H 0.095 0.905 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.106 4.106 24 H 0.091 0.909 25 C -0.085 4.085 26 C -0.227 4.227 27 H 0.280 0.720 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.342 0.658 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 -13.779 -0.477 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.186 4.186 11 C -0.098 4.098 12 C -0.215 4.215 13 C -0.001 4.001 14 N -0.294 5.294 15 C -0.036 4.036 16 H 0.094 0.906 17 C -0.201 4.201 18 C -0.132 4.132 19 H 0.113 0.887 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.125 4.125 24 H 0.110 0.890 25 C -0.104 4.104 26 C -0.247 4.247 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.161 0.839 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.841 -13.201 -0.774 15.373 hybrid contribution 0.979 0.119 0.436 1.078 sum -6.862 -13.082 -0.337 14.776 Atomic orbital electron populations 1.69832 1.07547 1.29137 1.35180 1.25905 0.94709 1.01252 0.92322 0.86341 0.80765 0.80847 0.79009 1.19620 1.20046 1.18476 1.19585 0.97934 0.91291 1.40537 0.90559 1.17623 0.91100 0.91964 0.88337 1.21306 0.99442 0.96719 1.01148 1.20506 0.97676 0.92496 0.99096 1.18918 1.00502 0.93204 1.08924 1.20586 0.90542 0.94440 0.94540 1.60464 1.30910 1.31818 1.06254 1.22527 0.94586 0.88510 0.97943 0.90634 1.23652 0.98164 0.99530 0.98709 1.23221 0.96004 0.96963 0.96985 0.88724 1.22100 0.96351 0.98249 0.98706 1.22364 0.97972 0.99943 0.95593 1.22295 0.98605 0.96735 0.97015 1.23427 0.95072 0.98230 0.95805 0.89039 1.20349 0.95923 0.96213 0.97940 1.20929 1.03894 0.92976 1.06892 0.90915 0.86554 0.89472 0.92007 0.96386 0.83924 0.90268 0.91804 0.92263 0.92069 0.91713 0.92022 0.91671 0.91563 0.89991 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.74 10.96 55.55 0.61 -20.13 16 2 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 3 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 8 H 0.08 1.97 7.90 -52.48 -0.41 1.55 16 9 C 0.11 3.03 5.57 -106.82 -0.60 2.43 16 10 C -0.17 -4.39 8.69 -38.87 -0.34 -4.73 16 11 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 12 C -0.21 -4.66 5.41 -104.33 -0.56 -5.22 16 13 C 0.13 2.25 5.64 -4.97 -0.03 2.22 16 14 N -0.66 -10.85 6.57 -107.36 -0.71 -11.55 16 15 C 0.08 1.00 3.73 -67.12 -0.25 0.75 16 16 H 0.08 0.99 7.86 -51.93 -0.41 0.59 16 17 C -0.16 -1.85 6.63 -25.98 -0.17 -2.02 16 18 C -0.11 -1.28 4.74 -88.77 -0.42 -1.70 16 19 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 20 C -0.12 -1.11 6.39 -25.61 -0.16 -1.28 16 21 C -0.12 -1.09 6.83 -25.09 -0.17 -1.26 16 22 C -0.11 -1.08 6.28 -24.86 -0.16 -1.23 16 23 C -0.11 -1.28 4.76 -88.52 -0.42 -1.70 16 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 25 C -0.09 -1.91 9.67 -39.66 -0.38 -2.29 16 26 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 27 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 28 H 0.12 3.17 6.18 -52.49 -0.32 2.84 16 29 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 31 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.34 5.66 8.19 -39.29 -0.32 5.34 16 33 H 0.08 0.82 7.44 -51.93 -0.39 0.44 16 34 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.55 7.89 -51.93 -0.41 0.14 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.63 7.31 -51.93 -0.38 0.25 16 41 H 0.08 1.62 8.06 -52.48 -0.42 1.19 16 42 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -26.82 334.73 -11.78 -38.61 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.84 Total: 9.52 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: -4.86 Total: -35.25 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: -0.10 Total: -31.68 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.82 -11.78 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462381481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.794 kcal (2) G-P(sol) polarization free energy of solvation -26.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds