Wall clock time and date at job start Mon Mar 30 2020 01:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46736 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46881 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99843 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00313 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00063 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00178 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47253 * 180.02562 * 16 15 13 18 18 H 1.09005 * 110.64180 * 308.14775 * 17 16 15 19 19 C 1.54935 * 110.72508 * 71.49409 * 17 16 15 20 20 N 1.48528 * 103.22685 * 155.77478 * 19 17 16 21 21 C 1.47902 * 105.82204 * 320.79194 * 20 19 17 22 22 C 1.53994 * 107.05311 * 25.32940 * 21 20 19 23 23 H 1.09001 * 110.39118 * 117.73956 * 22 21 20 24 24 O 1.42902 * 110.31073 * 239.85840 * 22 21 20 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.08999 * 109.46737 * 299.99057 * 10 9 7 29 29 H 1.08993 * 109.47411 * 59.99528 * 10 9 7 30 30 H 1.09007 * 109.47383 * 299.99697 * 11 10 9 31 31 H 1.09001 * 109.47155 * 60.00044 * 11 10 9 32 32 H 0.96998 * 120.00621 * 0.02562 * 12 11 10 33 33 H 0.96997 * 119.99563 * 359.97438 * 15 13 12 34 34 H 1.09004 * 109.46836 * 300.00057 * 16 15 13 35 35 H 1.09000 * 109.47591 * 59.99714 * 16 15 13 36 36 H 1.09005 * 110.66534 * 274.21370 * 19 17 16 37 37 H 1.09004 * 110.66613 * 37.33744 * 19 17 16 38 38 H 1.00902 * 110.99939 * 81.30903 * 20 19 17 39 39 H 1.08999 * 109.91858 * 265.98254 * 21 20 19 40 40 H 1.08997 * 110.08457 * 144.77201 * 21 20 19 41 41 H 0.96702 * 113.99664 * 295.72222 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 6 1.4803 -4.9871 -0.0116 12 7 2.4323 -6.1005 -0.0182 13 6 1.9831 -7.3712 -0.0185 14 8 0.7877 -7.5935 -0.0136 15 7 2.8589 -8.3957 -0.0240 16 6 2.3706 -9.7769 -0.0249 17 6 3.5606 -10.7386 -0.0309 18 1 4.2526 -10.4885 -0.8351 19 6 4.2811 -10.7280 1.3407 20 7 4.9507 -12.0531 1.3830 21 6 3.9926 -13.0083 0.7854 22 6 3.0803 -12.2024 -0.1578 23 1 3.1937 -12.5502 -1.1846 24 8 1.7169 -12.3147 0.2551 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 2.8685 -3.6024 -0.9044 29 1 2.8753 -3.6063 0.8755 30 1 0.8573 -5.0466 0.8809 31 1 0.8501 -5.0431 -0.8992 32 1 3.3860 -5.9234 -0.0217 33 1 3.8125 -8.2184 -0.0283 34 1 1.7686 -9.9499 0.8672 35 1 1.7614 -9.9465 -0.9127 36 1 5.0160 -9.9240 1.3830 37 1 3.5604 -10.6350 2.1531 38 1 5.8165 -12.0375 0.8651 39 1 3.3963 -13.4755 1.5691 40 1 4.5280 -13.7720 0.2213 41 1 1.3609 -13.2119 0.1970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:47 Heat of formation + Delta-G solvation = -96.182954 kcal Electronic energy + Delta-G solvation = -20321.987743 eV Core-core repulsion = 17042.949957 eV Total energy + Delta-G solvation = -3279.037786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21861 -39.38612 -35.96487 -35.63499 -34.66657 -33.54020 -31.41698 -30.27804 -28.67413 -26.48276 -24.86879 -22.89774 -22.34581 -20.95757 -20.77364 -20.41902 -18.27284 -18.06152 -16.82402 -16.67702 -15.99561 -15.77396 -15.13429 -14.90865 -14.58144 -14.19262 -14.02549 -13.89383 -13.72516 -13.04635 -12.92210 -12.88247 -12.47168 -12.07760 -11.75684 -11.59966 -11.50494 -11.18553 -10.84062 -10.77239 -10.60588 -10.21143 -10.10660 -9.98056 -9.76975 -9.23377 -9.10155 -8.61380 -8.55786 -8.31743 -6.35258 -4.04892 2.78683 3.38350 3.43781 3.47570 3.54211 3.63231 3.71646 4.09566 4.27192 4.37435 4.44892 4.55707 4.67884 4.88091 4.89819 5.00023 5.24198 5.39374 5.41948 5.56016 5.61485 5.70258 5.74506 5.88973 6.09800 6.11211 6.44236 6.46012 6.52694 6.74656 6.77470 6.90638 7.03983 7.17744 7.38811 7.51276 8.14106 8.20536 8.46792 8.75780 8.89058 9.67759 11.05606 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.050500 B = 0.002437 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.323415 B =11486.595911 C =11900.577780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.603 4.603 8 H 0.049 0.951 9 C 0.010 3.990 10 C -0.113 4.113 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.700 3.300 14 O -0.591 6.591 15 N -0.754 5.754 16 C 0.164 3.836 17 C -0.133 4.133 18 H 0.091 0.909 19 C 0.049 3.951 20 N -0.671 5.671 21 C 0.011 3.989 22 C 0.082 3.918 23 H 0.065 0.935 24 O -0.554 6.554 25 H 0.270 0.730 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.393 0.607 33 H 0.392 0.608 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.338 0.662 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.655 -27.330 -0.714 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.901 3.099 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.641 4.641 8 H 0.067 0.933 9 C -0.027 4.027 10 C -0.151 4.151 11 C 0.011 3.989 12 N -0.397 5.397 13 C 0.399 3.601 14 O -0.469 6.469 15 N -0.410 5.410 16 C 0.040 3.960 17 C -0.153 4.153 18 H 0.109 0.891 19 C -0.081 4.081 20 N -0.298 5.298 21 C -0.120 4.120 22 C 0.021 3.979 23 H 0.083 0.917 24 O -0.359 6.359 25 H 0.080 0.920 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.226 0.774 33 H 0.225 0.775 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.154 0.846 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 10.263 -25.413 0.113 27.407 hybrid contribution 1.163 -1.968 -1.146 2.557 sum 11.426 -27.381 -1.034 29.687 Atomic orbital electron populations 1.70742 1.06892 1.30756 1.46501 1.25871 0.96583 1.02787 0.93816 0.83495 0.74599 0.75081 0.76722 1.21460 1.21541 1.20985 1.22041 0.94249 0.91930 1.55914 0.93284 1.19163 0.94530 0.92644 0.96411 1.21743 0.99478 0.92836 1.01029 1.21494 0.91355 0.84240 1.01785 1.45348 1.10333 1.04465 1.79554 1.15999 0.85322 0.80718 0.78022 1.90928 1.14162 1.84107 1.57721 1.45168 1.08708 1.05564 1.81602 1.20755 0.94323 0.77633 1.03326 1.23058 0.98278 0.93982 0.99996 0.89059 1.23282 0.97995 0.91024 0.95767 1.62633 1.05800 1.06014 1.55328 1.23582 0.95221 0.95881 0.97271 1.23014 0.82945 0.94870 0.97118 0.91697 1.86605 1.25495 1.34390 1.89389 0.91955 0.97140 0.97141 0.92630 0.92600 0.92023 0.92071 0.77364 0.77545 0.90632 0.91603 0.90255 0.89279 0.84635 0.89496 0.90975 0.77246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.40 13.65 55.43 0.76 -27.64 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.47 29.90 -169.99 -5.08 20.38 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.60 -17.25 9.11 -34.44 -0.31 -17.57 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 10 C -0.11 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16 12 N -0.74 -11.12 5.56 -65.22 -0.36 -11.49 16 13 C 0.70 11.17 8.57 -86.91 -0.74 10.43 16 14 O -0.59 -12.24 16.34 5.29 0.09 -12.16 16 15 N -0.75 -8.40 5.48 -65.22 -0.36 -8.76 16 16 C 0.16 1.76 4.27 -4.04 -0.02 1.75 16 17 C -0.13 -0.92 3.05 -88.76 -0.27 -1.19 16 18 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 19 C 0.05 0.34 6.91 -1.90 -0.01 0.32 16 20 N -0.67 -4.28 7.51 -110.09 -0.83 -5.10 16 21 C 0.01 0.06 7.33 -2.75 -0.02 0.04 16 22 C 0.08 0.50 4.23 -25.38 -0.11 0.39 16 23 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 24 O -0.55 -4.12 11.80 -35.23 -0.42 -4.54 16 25 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 26 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 27 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.39 4.64 8.49 -40.82 -0.35 4.30 16 33 H 0.39 3.08 8.49 -40.82 -0.35 2.74 16 34 H 0.08 0.99 7.61 -51.93 -0.39 0.59 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 38 H 0.34 1.57 8.92 -39.29 -0.35 1.22 16 39 H 0.09 0.52 7.96 -51.93 -0.41 0.11 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.38 1.21 9.12 45.56 0.42 1.62 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -36.31 338.50 -8.95 -45.26 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.98 Total: 4.30 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.87 Total: -5.36 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.79 Total: -52.99 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.33 Total: -16.70 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.31 -8.95 -45.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.918 kcal (2) G-P(sol) polarization free energy of solvation -36.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds