Wall clock time and date at job start Mon Mar 30 2020 01:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46736 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46881 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99843 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00313 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00063 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00178 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47253 * 180.02562 * 16 15 13 18 18 H 1.09005 * 110.64180 * 308.14775 * 17 16 15 19 19 C 1.54935 * 110.72508 * 71.49409 * 17 16 15 20 20 N 1.48528 * 103.22685 * 155.77478 * 19 17 16 21 21 C 1.47902 * 105.82204 * 320.79194 * 20 19 17 22 22 C 1.53994 * 107.05311 * 25.32940 * 21 20 19 23 23 H 1.09001 * 110.39118 * 117.73956 * 22 21 20 24 24 O 1.42902 * 110.31073 * 239.85840 * 22 21 20 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.08999 * 109.46737 * 299.99057 * 10 9 7 29 29 H 1.08993 * 109.47411 * 59.99528 * 10 9 7 30 30 H 1.09007 * 109.47383 * 299.99697 * 11 10 9 31 31 H 1.09001 * 109.47155 * 60.00044 * 11 10 9 32 32 H 0.96998 * 120.00621 * 0.02562 * 12 11 10 33 33 H 0.96997 * 119.99563 * 359.97438 * 15 13 12 34 34 H 1.09004 * 109.46836 * 300.00057 * 16 15 13 35 35 H 1.09000 * 109.47591 * 59.99714 * 16 15 13 36 36 H 1.09005 * 110.66534 * 274.21370 * 19 17 16 37 37 H 1.09004 * 110.66613 * 37.33744 * 19 17 16 38 38 H 1.00902 * 110.99939 * 81.30903 * 20 19 17 39 39 H 1.08999 * 109.91858 * 265.98254 * 21 20 19 40 40 H 1.08997 * 110.08457 * 144.77201 * 21 20 19 41 41 H 0.96702 * 113.99664 * 295.72222 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 6 1.4803 -4.9871 -0.0116 12 7 2.4323 -6.1005 -0.0182 13 6 1.9831 -7.3712 -0.0185 14 8 0.7877 -7.5935 -0.0136 15 7 2.8589 -8.3957 -0.0240 16 6 2.3706 -9.7769 -0.0249 17 6 3.5606 -10.7386 -0.0309 18 1 4.2526 -10.4885 -0.8351 19 6 4.2811 -10.7280 1.3407 20 7 4.9507 -12.0531 1.3830 21 6 3.9926 -13.0083 0.7854 22 6 3.0803 -12.2024 -0.1578 23 1 3.1937 -12.5502 -1.1846 24 8 1.7169 -12.3147 0.2551 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 2.8685 -3.6024 -0.9044 29 1 2.8753 -3.6063 0.8755 30 1 0.8573 -5.0466 0.8809 31 1 0.8501 -5.0431 -0.8992 32 1 3.3860 -5.9234 -0.0217 33 1 3.8125 -8.2184 -0.0283 34 1 1.7686 -9.9499 0.8672 35 1 1.7614 -9.9465 -0.9127 36 1 5.0160 -9.9240 1.3830 37 1 3.5604 -10.6350 2.1531 38 1 5.8165 -12.0375 0.8651 39 1 3.3963 -13.4755 1.5691 40 1 4.5280 -13.7720 0.2213 41 1 1.3609 -13.2119 0.1970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:47 Heat of formation + Delta-G solvation = -128.604725 kcal Electronic energy + Delta-G solvation = -20323.393656 eV Core-core repulsion = 17042.949957 eV Total energy + Delta-G solvation = -3280.443699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.22947 -40.20185 -37.28955 -36.45110 -35.76764 -35.44851 -33.02463 -31.29552 -29.14969 -28.19752 -25.97664 -24.69367 -22.94319 -22.53985 -22.00243 -21.22127 -19.31854 -18.93903 -18.73137 -17.29221 -17.12370 -17.01430 -16.10603 -15.74519 -15.63899 -15.59422 -15.35105 -15.05489 -14.99231 -14.81459 -13.89559 -13.65023 -13.58639 -13.47924 -12.97837 -12.64677 -12.58168 -12.56002 -12.14347 -12.04284 -11.87479 -11.79440 -11.70831 -11.37684 -11.09445 -10.69427 -10.54291 -10.46346 -9.84232 -9.60023 -8.68411 -6.39482 1.54000 1.62911 1.63854 1.80994 2.08124 2.58555 3.06639 3.16971 3.18972 3.33203 3.68179 3.78956 3.85738 4.04676 4.11256 4.21318 4.30574 4.38317 4.42154 4.55288 4.66644 4.79095 4.79719 4.84941 4.92763 4.96746 5.00414 5.16379 5.33679 5.42632 5.44656 5.47967 5.64480 5.93977 5.99594 6.19327 6.42839 6.56730 6.86685 7.06518 7.43759 7.52428 8.72483 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.050500 B = 0.002437 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.323415 B =11486.595911 C =11900.577780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 1.123 2.877 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.285 1.285 7 C -0.616 4.616 8 H 0.058 0.942 9 C 0.006 3.994 10 C -0.093 4.093 11 C 0.149 3.851 12 N -0.729 5.729 13 C 0.696 3.304 14 O -0.643 6.643 15 N -0.729 5.729 16 C 0.170 3.830 17 C -0.124 4.124 18 H 0.115 0.885 19 C 0.051 3.949 20 N -0.681 5.681 21 C 0.015 3.985 22 C 0.081 3.919 23 H 0.083 0.917 24 O -0.580 6.580 25 H 0.255 0.745 26 H -0.011 1.011 27 H -0.011 1.011 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.413 0.587 33 H 0.412 0.588 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.351 0.649 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.801 -28.038 -1.170 31.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.944 3.056 4 H -0.198 1.198 5 H -0.189 1.189 6 H -0.211 1.211 7 C -0.654 4.654 8 H 0.077 0.923 9 C -0.031 4.031 10 C -0.131 4.131 11 C 0.024 3.976 12 N -0.385 5.385 13 C 0.395 3.605 14 O -0.525 6.525 15 N -0.386 5.386 16 C 0.045 3.955 17 C -0.145 4.145 18 H 0.133 0.867 19 C -0.078 4.078 20 N -0.309 5.309 21 C -0.115 4.115 22 C 0.020 3.980 23 H 0.101 0.899 24 O -0.389 6.389 25 H 0.064 0.936 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.249 0.751 33 H 0.249 0.751 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.168 0.832 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 13.497 -26.183 -0.343 29.459 hybrid contribution 0.165 -1.844 -0.990 2.100 sum 13.662 -28.028 -1.333 31.209 Atomic orbital electron populations 1.70887 1.08143 1.29899 1.48917 1.27544 0.96606 1.07207 0.92779 0.82866 0.74215 0.70722 0.77797 1.19782 1.18922 1.21120 1.22499 0.94962 0.93034 1.54899 0.92331 1.19132 0.95185 0.94454 0.94364 1.21461 0.98150 0.91247 1.02248 1.21062 0.91420 0.84688 1.00393 1.44972 1.10804 1.03431 1.79286 1.16202 0.85085 0.81463 0.77734 1.90899 1.16718 1.84872 1.59977 1.44947 1.09210 1.04728 1.79743 1.20679 0.95785 0.77897 1.01089 1.23067 0.96936 0.93574 1.00908 0.86666 1.23179 0.97840 0.92087 0.94729 1.62568 1.06522 1.05656 1.56129 1.23562 0.94998 0.96003 0.96981 1.23137 0.82448 0.94218 0.98242 0.89876 1.86569 1.26485 1.36141 1.89659 0.93596 0.99297 0.99251 0.91264 0.91287 0.93628 0.93568 0.75053 0.75090 0.93398 0.93409 0.88720 0.91932 0.83217 0.90577 0.88689 0.75391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.65 21.45 0.29 -59.35 16 2 C -0.04 -2.60 5.46 84.65 0.46 -2.14 16 3 Si 1.12 50.19 29.90 68.60 2.05 52.24 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.62 -35.04 9.11 25.60 0.23 -34.80 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.01 0.33 4.28 29.85 0.13 0.46 16 10 C -0.09 -3.65 5.27 30.59 0.16 -3.49 16 11 C 0.15 5.48 5.67 86.38 0.49 5.97 16 12 N -0.73 -20.89 5.56 -478.53 -2.66 -23.55 16 13 C 0.70 21.86 8.57 179.05 1.53 23.39 16 14 O -0.64 -27.25 16.34 -3.98 -0.07 -27.31 16 15 N -0.73 -15.26 5.48 -478.53 -2.62 -17.88 16 16 C 0.17 3.58 4.27 86.38 0.37 3.95 16 17 C -0.12 -1.48 3.05 -9.59 -0.03 -1.51 16 18 H 0.12 0.87 8.14 -2.38 -0.02 0.86 16 19 C 0.05 0.63 6.91 86.65 0.60 1.22 16 20 N -0.68 -7.18 7.51 -502.21 -3.77 -10.95 16 21 C 0.01 0.13 7.33 86.45 0.63 0.76 16 22 C 0.08 0.83 4.23 31.47 0.13 0.96 16 23 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 24 O -0.58 -8.42 11.80 -148.98 -1.76 -10.18 16 25 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 26 H -0.01 -0.64 8.01 -2.39 -0.02 -0.65 16 27 H -0.01 -0.61 8.00 -2.39 -0.02 -0.63 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.41 8.61 8.49 -92.71 -0.79 7.82 16 33 H 0.41 5.32 8.49 -92.71 -0.79 4.53 16 34 H 0.05 1.30 7.61 -2.39 -0.02 1.28 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.06 1.11 7.94 -2.38 -0.02 1.09 16 38 H 0.35 2.21 8.92 -89.69 -0.80 1.41 16 39 H 0.08 0.83 7.96 -2.39 -0.02 0.81 16 40 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.40 2.32 9.12 -74.06 -0.68 1.65 16 Total: -1.00 -80.59 338.50 -5.71 -86.30 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -1.89 Total: 15.92 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.71 Total: -5.23 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -8.76 Total: -111.73 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.82 Total: -37.49 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.24 kcal Total: -80.59 -5.71 -86.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.308 kcal (2) G-P(sol) polarization free energy of solvation -80.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds