Wall clock time and date at job start Mon Mar 30 2020 02:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.46963 * 2 1 4 4 O 1.42901 * 109.47110 * 119.99988 * 2 1 3 5 5 N 1.41605 * 113.99850 * 84.99995 * 4 2 1 6 6 C 1.34779 * 120.00002 * 179.97438 * 5 4 2 7 7 O 1.21587 * 119.99510 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99840 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99376 * 180.02562 * 8 6 5 10 10 C 1.53065 * 109.44591 * 84.79556 * 9 8 6 11 11 C 1.53192 * 109.29648 * 181.23295 * 10 9 8 12 12 N 1.46922 * 108.89269 * 305.57538 * 11 10 9 13 13 C 1.36942 * 120.62796 * 233.51528 * 12 11 10 14 14 H 1.08007 * 119.99636 * 151.83092 * 13 12 11 15 15 C 1.38806 * 120.00203 * 331.83144 * 13 12 11 16 16 N 1.31624 * 120.00191 * 343.08250 * 15 13 12 17 17 Si 1.86800 * 120.00146 * 163.07925 * 15 13 12 18 18 H 1.48503 * 109.47195 * 89.99708 * 17 15 13 19 19 H 1.48498 * 109.47355 * 210.00264 * 17 15 13 20 20 H 1.48504 * 109.46850 * 330.00278 * 17 15 13 21 21 C 1.46924 * 118.73925 * 53.53382 * 12 11 10 22 22 C 1.53049 * 109.45272 * 204.99544 * 9 8 6 23 23 H 1.08996 * 109.47379 * 59.99822 * 1 2 3 24 24 H 1.09008 * 109.47189 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47225 * 299.99460 * 1 2 3 26 26 H 1.09005 * 109.46887 * 240.00130 * 2 1 3 27 27 H 1.09000 * 109.47378 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47736 * 299.99943 * 3 2 1 29 29 H 1.09005 * 109.47213 * 60.00330 * 3 2 1 30 30 H 0.96995 * 119.99886 * 359.97438 * 5 4 2 31 31 H 0.96995 * 120.00047 * 359.97438 * 8 6 5 32 32 H 1.08996 * 109.45813 * 324.96250 * 9 8 6 33 33 H 1.09005 * 109.39523 * 61.35360 * 10 9 8 34 34 H 1.09004 * 109.62174 * 301.25047 * 10 9 8 35 35 H 1.09003 * 109.58615 * 185.71531 * 11 10 9 36 36 H 1.08998 * 109.58372 * 65.43477 * 11 10 9 37 37 H 0.96995 * 120.00379 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.58325 * 66.18371 * 21 12 11 39 39 H 1.08996 * 109.58499 * 186.46256 * 21 12 11 40 40 H 1.09002 * 109.49883 * 58.67895 * 22 9 8 41 41 H 1.08997 * 109.52642 * 298.59203 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 7 2.0920 -2.0800 1.0252 6 6 2.5277 -2.8354 2.0528 7 8 2.8468 -2.3093 3.1015 8 7 2.6097 -4.1739 1.9179 9 6 3.0828 -4.9950 3.0352 10 6 1.9125 -5.3035 3.9722 11 6 2.4169 -6.1361 5.1550 12 7 3.1098 -7.3246 4.6391 13 6 2.7531 -8.5778 5.0602 14 1 2.8990 -9.4278 4.4100 15 6 2.2040 -8.7558 6.3226 16 7 2.3263 -7.8126 7.2324 17 14 1.2913 -10.3339 6.7302 18 1 2.2464 -11.3309 7.2771 19 1 0.2392 -10.0508 7.7391 20 1 0.6630 -10.8746 5.4981 21 6 4.1930 -7.1428 3.6632 22 6 3.6683 -6.3019 2.4951 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.8371 -2.4996 0.1887 31 1 2.3549 -4.5935 1.0814 32 1 3.8520 -4.4522 3.5845 33 1 1.1526 -5.8657 3.4293 34 1 1.4827 -4.3718 4.3401 35 1 1.5724 -6.4443 5.7715 36 1 3.1075 -5.5411 5.7525 37 1 1.9429 -7.9371 8.1147 38 1 5.0292 -6.6285 4.1371 39 1 4.5221 -8.1153 3.2973 40 1 4.4870 -6.0786 1.8111 41 1 2.8936 -6.8571 1.9664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631246267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:13 Heat of formation + Delta-G solvation = -31.831034 kcal Electronic energy + Delta-G solvation = -21262.578536 eV Core-core repulsion = 17986.331259 eV Total energy + Delta-G solvation = -3276.247277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11914 -39.36280 -38.55703 -35.97263 -34.71171 -33.84686 -32.23470 -31.56839 -30.53827 -28.17238 -26.81806 -23.94652 -23.82027 -22.70121 -22.00764 -21.08664 -19.42510 -19.15138 -18.54075 -17.06683 -16.68969 -16.49541 -15.95479 -15.68800 -15.47065 -15.32485 -14.99900 -14.73138 -14.52269 -14.29251 -14.00452 -13.35869 -13.18000 -13.14219 -12.99773 -12.86194 -12.65248 -12.52707 -12.11122 -12.06037 -12.01375 -11.85418 -11.78261 -11.52854 -11.45114 -11.22707 -10.56439 -10.23000 -9.71624 -8.68921 -7.85147 -5.31569 0.61808 1.49022 1.50683 1.60429 2.11916 2.53705 2.79051 3.31317 3.60138 3.69951 3.84993 3.89938 3.98812 4.11344 4.14320 4.37041 4.50932 4.68809 4.70083 4.80706 4.82010 4.84613 4.85525 4.88652 5.05858 5.11895 5.16231 5.20386 5.26062 5.35452 5.47167 5.55572 5.64356 5.69244 5.74004 6.05545 6.40979 7.04829 7.15538 7.61036 7.86804 8.39677 9.22043 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.040389 B = 0.003365 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.092252 B = 8318.098304 C = 8514.089895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.045 3.955 3 C -0.143 4.143 4 O -0.158 6.158 5 N -0.600 5.600 6 C 0.714 3.286 7 O -0.630 6.630 8 N -0.711 5.711 9 C 0.183 3.817 10 C -0.132 4.132 11 C 0.183 3.817 12 N -0.609 5.609 13 C -0.260 4.260 14 H 0.076 0.924 15 C -0.056 4.056 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.284 1.284 19 H -0.297 1.297 20 H -0.266 1.266 21 C 0.140 3.860 22 C -0.119 4.119 23 H 0.094 0.906 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.422 0.578 31 H 0.415 0.585 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.054 0.946 36 H -0.012 1.012 37 H 0.249 0.751 38 H 0.011 0.989 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 12.202 -21.772 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 C -0.201 4.201 4 O -0.162 6.162 5 N -0.306 5.306 6 C 0.414 3.586 7 O -0.509 6.509 8 N -0.370 5.370 9 C 0.078 3.922 10 C -0.173 4.173 11 C 0.056 3.944 12 N -0.333 5.333 13 C -0.391 4.391 14 H 0.093 0.907 15 C -0.251 4.251 16 N -0.586 5.586 17 Si 0.797 3.203 18 H -0.211 1.211 19 H -0.224 1.224 20 H -0.190 1.190 21 C 0.015 3.985 22 C -0.159 4.159 23 H 0.113 0.887 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.265 0.735 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.006 0.994 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.321 12.809 -20.532 24.311 hybrid contribution -0.791 -0.778 0.197 1.127 sum -3.112 12.031 -20.335 23.831 Atomic orbital electron populations 1.22352 0.94531 1.02874 1.03490 1.22992 0.95207 0.94685 0.88395 1.21863 1.01998 0.92220 1.04066 1.90639 1.88830 1.00038 1.36700 1.45924 1.73010 0.95527 1.16189 1.15645 0.78437 0.81803 0.82666 1.90929 1.57383 1.72988 1.29604 1.44883 1.71236 1.02666 1.18249 1.20593 0.94958 0.90642 0.86016 1.22350 0.98377 0.98506 0.98034 1.20451 0.95298 0.86221 0.92413 1.44361 1.37161 1.02480 1.49299 1.19577 1.36478 0.86477 0.96521 0.90679 1.25897 1.03185 1.00790 0.95240 1.70216 1.48296 1.36252 1.03809 0.85248 0.78029 0.79362 0.77619 1.21118 1.22358 1.19018 1.21065 0.89511 0.98404 0.89567 1.22144 1.01587 0.93650 0.98485 0.88727 0.92410 0.93029 0.88249 0.91977 0.87445 0.92471 0.73474 0.74804 0.92589 0.91676 0.93939 0.92718 0.99434 0.94233 0.97086 0.91107 0.88693 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.56 71.98 0.69 -1.48 16 2 C 0.04 0.64 3.47 30.59 0.11 0.75 16 3 C -0.14 -1.70 9.56 71.98 0.69 -1.01 16 4 O -0.16 -4.04 10.75 -21.44 -0.23 -4.27 16 5 N -0.60 -13.75 6.38 -184.74 -1.18 -14.93 16 6 C 0.71 22.73 8.67 179.05 1.55 24.28 16 7 O -0.63 -27.94 16.41 13.36 0.22 -27.73 16 8 N -0.71 -18.66 5.08 -457.63 -2.33 -20.99 16 9 C 0.18 6.25 2.41 45.03 0.11 6.36 16 10 C -0.13 -5.42 5.66 30.68 0.17 -5.25 16 11 C 0.18 9.39 5.30 86.36 0.46 9.84 16 12 N -0.61 -30.72 3.00 -699.10 -2.09 -32.82 16 13 C -0.26 -14.22 9.58 84.03 0.81 -13.41 16 14 H 0.08 3.88 7.89 -2.91 -0.02 3.86 16 15 C -0.06 -3.17 4.92 84.86 0.42 -2.76 16 16 N -0.94 -57.38 11.20 21.65 0.24 -57.14 16 17 Si 0.97 45.03 29.59 68.60 2.03 47.06 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 C 0.14 5.58 6.52 86.36 0.56 6.14 16 22 C -0.12 -3.54 5.55 30.67 0.17 -3.37 16 23 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 0.91 7.94 -2.38 -0.02 0.89 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.11 0.63 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.42 5.49 8.44 -92.71 -0.78 4.71 16 31 H 0.41 7.03 8.62 -92.71 -0.80 6.23 16 32 H 0.06 2.27 7.58 -2.39 -0.02 2.26 16 33 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 34 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.05 3.16 6.06 -2.39 -0.01 3.15 16 36 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -78.59 335.39 1.84 -76.76 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -0.56 Total: 13.96 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 5.73 Total: 20.10 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -5.36 Total: -125.87 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.01 Total: -31.99 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -78.59 1.84 -76.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631246267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.925 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds