Wall clock time and date at job start Mon Mar 30 2020 02:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46983 * 2 1 4 4 N 1.46500 * 109.46687 * 119.99892 * 2 1 3 5 5 C 1.34775 * 120.00474 * 85.00593 * 4 2 1 6 6 O 1.21589 * 119.99889 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00068 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99531 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46883 * 179.97438 * 8 7 5 10 10 N 1.46898 * 109.47006 * 180.02562 * 9 8 7 11 11 C 1.47484 * 110.99850 * 265.97298 * 10 9 8 12 12 C 1.53513 * 87.93048 * 221.29851 * 11 10 9 13 13 O 1.42898 * 114.16936 * 272.37557 * 12 11 10 14 14 C 1.50700 * 114.34113 * 139.68412 * 12 11 10 15 15 H 1.07997 * 119.99862 * 266.07039 * 14 12 11 16 16 C 1.37877 * 120.00144 * 86.07797 * 14 12 11 17 17 N 1.31513 * 119.99781 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00020 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47337 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46819 * 120.00190 * 18 16 14 21 21 H 1.48502 * 109.47118 * 239.99782 * 18 16 14 22 22 C 1.47480 * 110.99897 * 170.00548 * 10 9 8 23 23 H 1.08998 * 109.46879 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47085 * 299.99976 * 1 2 3 25 25 H 1.08994 * 109.46840 * 60.00515 * 1 2 3 26 26 H 1.08998 * 109.46756 * 239.99633 * 2 1 3 27 27 H 1.08997 * 109.46777 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46821 * 299.99391 * 3 2 1 29 29 H 1.08990 * 109.47372 * 59.99639 * 3 2 1 30 30 H 0.96998 * 119.99761 * 264.99478 * 4 2 1 31 31 H 0.96992 * 120.00503 * 359.97438 * 7 5 4 32 32 H 1.09001 * 109.46891 * 60.00097 * 8 7 5 33 33 H 1.08993 * 109.47378 * 299.99469 * 8 7 5 34 34 H 1.09001 * 109.46801 * 300.00349 * 9 8 7 35 35 H 1.09001 * 109.46998 * 59.99945 * 9 8 7 36 36 H 1.09003 * 113.47621 * 336.06421 * 11 10 9 37 37 H 1.08998 * 113.47528 * 106.53016 * 11 10 9 38 38 H 0.96701 * 114.00119 * 273.84346 * 13 12 11 39 39 H 0.97001 * 120.00369 * 179.97438 * 17 16 14 40 40 H 1.09008 * 113.47400 * 253.47275 * 22 10 9 41 41 H 1.09000 * 113.47785 * 23.87223 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -2.0322 1.1945 6 8 1.8577 -2.6694 0.2003 7 7 2.5968 -2.6674 2.2949 8 6 2.7362 -4.1258 2.2931 9 6 3.2618 -4.5895 3.6532 10 7 3.4022 -6.0517 3.6512 11 6 2.1951 -6.6993 4.1977 12 6 3.1212 -7.6724 4.9407 13 8 3.4881 -8.8260 4.1814 14 6 2.6811 -7.9992 6.3444 15 1 3.0716 -7.4344 7.1780 16 6 1.7802 -9.0194 6.5646 17 7 1.3045 -9.7070 5.5494 18 14 1.2353 -9.4250 8.3047 19 1 1.9119 -8.5122 9.2608 20 1 -0.2359 -9.2559 8.4147 21 1 1.5971 -10.8299 8.6220 22 6 4.1253 -6.5148 4.8502 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 2.2490 -0.1823 1.9894 31 1 2.8280 -2.1591 3.0879 32 1 3.4369 -4.4228 1.5127 33 1 1.7654 -4.5834 2.1032 34 1 4.2328 -4.1318 3.8427 35 1 2.5615 -4.2923 4.4338 36 1 1.6195 -6.0547 4.8620 37 1 1.5790 -7.1805 3.4382 38 1 2.8539 -9.5536 4.2401 39 1 0.6710 -10.4250 5.7043 40 1 5.1452 -6.8397 4.6438 41 1 4.0658 -5.8205 5.6884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658381707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:42 Heat of formation + Delta-G solvation = -75.304764 kcal Electronic energy + Delta-G solvation = -20814.505950 eV Core-core repulsion = 17536.373510 eV Total energy + Delta-G solvation = -3278.132440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.25360 -40.82213 -37.40687 -36.55663 -35.60834 -34.08959 -32.76655 -30.98058 -28.38333 -28.07806 -26.71917 -25.72542 -22.94643 -22.50645 -21.67681 -20.51300 -19.61285 -19.04742 -17.55274 -17.18930 -16.83943 -16.69899 -16.03561 -15.92348 -15.62119 -15.41993 -15.16490 -14.80550 -14.49958 -13.89965 -13.77634 -13.58716 -13.36960 -13.13219 -13.05310 -12.99179 -12.76730 -12.43135 -12.30261 -12.25538 -12.15792 -11.90303 -11.74251 -11.41122 -11.13995 -10.63822 -10.42259 -10.08674 -9.82238 -9.69523 -8.24808 -6.42713 1.42223 1.45402 1.56537 1.64091 2.12521 2.37737 2.96100 3.10068 3.46254 3.79853 3.94951 3.95969 4.16560 4.19111 4.26994 4.34432 4.39608 4.43572 4.55308 4.74330 4.76670 4.81598 4.90103 4.92938 4.95774 5.04786 5.16207 5.26464 5.33521 5.36066 5.44385 5.45581 5.60927 5.76107 5.96855 6.00715 6.30436 6.64334 7.10474 7.30781 7.56289 7.57322 8.80705 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.034898 B = 0.003037 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.146309 B = 9217.858185 C = 9431.457015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.149 4.149 4 N -0.727 5.727 5 C 0.697 3.303 6 O -0.641 6.641 7 N -0.730 5.730 8 C 0.161 3.839 9 C 0.016 3.984 10 N -0.478 5.478 11 C -0.012 4.012 12 C 0.215 3.785 13 O -0.585 6.585 14 C -0.553 4.553 15 H 0.071 0.929 16 C 0.023 3.977 17 N -0.922 5.922 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.018 3.982 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.412 0.588 31 H 0.413 0.587 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.383 0.617 39 H 0.274 0.726 40 H 0.073 0.927 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 22.026 -3.572 22.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 C -0.207 4.207 4 N -0.384 5.384 5 C 0.397 3.603 6 O -0.523 6.523 7 N -0.387 5.387 8 C 0.035 3.965 9 C -0.114 4.114 10 N -0.201 5.201 11 C -0.142 4.142 12 C 0.174 3.826 13 O -0.397 6.397 14 C -0.591 4.591 15 H 0.089 0.911 16 C -0.177 4.177 17 N -0.563 5.563 18 Si 0.796 3.204 19 H -0.188 1.188 20 H -0.205 1.205 21 H -0.206 1.206 22 C -0.110 4.110 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.249 0.751 31 H 0.250 0.750 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.238 0.762 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.027 21.559 -5.362 22.240 hybrid contribution -1.131 -0.415 2.072 2.397 sum -0.104 21.144 -3.291 21.399 Atomic orbital electron populations 1.22181 0.95384 1.00984 1.03374 1.20916 0.94073 0.93826 0.86848 1.22010 1.01789 0.92562 1.04304 1.45139 1.71008 1.03908 1.18350 1.16194 0.78130 0.82880 0.83142 1.90903 1.59031 1.67061 1.35272 1.44829 1.70927 1.07482 1.15454 1.20694 0.99827 0.78457 0.97499 1.22793 1.02186 0.90595 0.95783 1.68684 1.09640 1.06901 1.34840 1.24583 0.94169 0.98435 0.97018 1.19785 0.90898 0.83228 0.88690 1.86013 1.53204 1.27926 1.72529 1.21881 1.25808 1.18165 0.93252 0.91123 1.25880 0.95011 0.95169 1.01623 1.69392 1.32099 1.22566 1.32272 0.85310 0.77847 0.78083 0.79176 1.18763 1.20474 1.20594 1.23975 0.99010 0.96302 0.91746 0.95366 0.91188 0.90056 0.92087 0.91772 0.89621 0.90451 0.75124 0.75033 0.92706 0.94285 0.88558 0.92372 0.91546 0.93710 0.76208 0.91651 0.90893 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.48 71.98 0.68 -1.99 16 2 C 0.15 2.48 3.18 44.99 0.14 2.62 16 3 C -0.15 -1.29 9.38 71.98 0.68 -0.62 16 4 N -0.73 -13.03 5.08 -457.81 -2.33 -15.36 16 5 C 0.70 19.24 8.53 179.06 1.53 20.76 16 6 O -0.64 -24.64 16.01 -4.00 -0.06 -24.70 16 7 N -0.73 -17.42 5.56 -478.52 -2.66 -20.08 16 8 C 0.16 5.00 6.00 86.38 0.52 5.52 16 9 C 0.02 0.47 4.93 86.31 0.43 0.89 16 10 N -0.48 -19.28 6.33 -928.24 -5.88 -25.16 16 11 C -0.01 -0.57 7.13 83.57 0.60 0.02 16 12 C 0.22 10.86 1.56 -11.20 -0.02 10.85 16 13 O -0.58 -32.61 13.53 -148.98 -2.02 -34.62 16 14 C -0.55 -28.90 8.69 25.60 0.22 -28.68 16 15 H 0.07 3.54 7.81 -2.91 -0.02 3.51 16 16 C 0.02 1.17 5.39 84.65 0.46 1.63 16 17 N -0.92 -50.01 11.02 21.45 0.24 -49.77 16 18 Si 0.97 40.96 29.54 68.60 2.03 42.99 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.02 0.76 7.09 83.57 0.59 1.35 16 23 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.36 7.58 -2.39 -0.02 1.35 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.41 4.34 8.62 -92.71 -0.80 3.54 16 31 H 0.41 6.51 8.49 -92.71 -0.79 5.72 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 2.40 8.08 -2.39 -0.02 2.38 16 35 H 0.06 1.64 7.30 -2.39 -0.02 1.62 16 36 H 0.07 2.92 7.38 -2.39 -0.02 2.91 16 37 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.38 21.98 6.33 -74.06 -0.47 21.51 16 39 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.07 3.00 8.14 -2.38 -0.02 2.99 16 41 H 0.09 3.17 7.87 -2.39 -0.02 3.15 16 Total: -1.00 -68.81 338.96 -5.87 -74.68 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -1.01 Total: 39.67 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 5.82 Total: 12.36 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -10.63 Total: -110.37 kcal Atomic # 8 Polarization: -57.24 SS G_CDS: -2.08 Total: -59.32 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -68.81 -5.87 -74.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658381707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.625 kcal (2) G-P(sol) polarization free energy of solvation -68.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds