Wall clock time and date at job start Mon Mar 30 2020 01:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35678 * 116.99988 * 2 1 4 4 C 1.38924 * 119.68056 * 180.25584 * 3 2 1 5 5 C 1.38383 * 119.10482 * 180.31660 * 4 3 2 6 6 C 1.50703 * 120.75258 * 179.70722 * 5 4 3 7 7 N 1.46498 * 109.47212 * 269.72058 * 6 5 4 8 8 S 1.65602 * 119.99612 * 164.72359 * 7 6 5 9 9 O 1.42104 * 106.40175 * 178.81816 * 8 7 6 10 10 O 1.42095 * 106.40656 * 311.73868 * 8 7 6 11 11 C 1.76203 * 107.21635 * 65.28001 * 8 7 6 12 12 H 1.07994 * 119.99889 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99706 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00395 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99840 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47505 * 90.00035 * 15 13 11 17 17 H 1.48495 * 109.46893 * 210.00509 * 15 13 11 18 18 H 1.48505 * 109.46828 * 330.00096 * 15 13 11 19 19 C 1.38817 * 118.48823 * 359.43972 * 5 4 3 20 20 C 1.38051 * 119.28959 * 0.27151 * 19 5 4 21 21 N 1.31960 * 120.83521 * 0.02562 * 20 19 5 22 22 H 1.09003 * 109.46955 * 60.00098 * 1 2 3 23 23 H 1.08997 * 109.47303 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46858 * 300.00345 * 1 2 3 25 25 H 1.08003 * 120.44874 * 0.02562 * 4 3 2 26 26 H 1.08996 * 109.47013 * 149.72364 * 6 5 4 27 27 H 1.08999 * 109.47128 * 29.72577 * 6 5 4 28 28 H 0.97001 * 120.00384 * 345.00836 * 7 6 5 29 29 H 0.97001 * 120.00277 * 180.02562 * 14 13 11 30 30 H 1.08006 * 120.35959 * 180.24861 * 19 5 4 31 31 H 1.08004 * 119.57919 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0054 5 6 4.0485 2.5131 0.0014 6 6 5.5513 2.6268 0.0025 7 7 6.0373 2.6631 1.3840 8 16 7.6414 2.4054 1.7044 9 8 7.7950 2.5319 3.1114 10 8 8.0121 1.2380 0.9841 11 6 8.5381 3.7402 0.9840 12 1 8.0119 4.5214 0.4557 13 6 9.9115 3.7879 1.0958 14 7 10.5523 2.8368 1.7396 15 14 10.8621 5.2033 0.3327 16 1 10.9920 6.3029 1.3222 17 1 12.2134 4.7341 -0.0660 18 1 10.1366 5.6982 -0.8648 19 6 3.2506 3.6490 0.0014 20 6 1.8772 3.5096 0.0004 21 7 1.3187 2.3140 0.0000 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 4.0230 0.3694 -0.0100 26 1 5.8468 3.5419 -0.5107 27 1 5.9811 1.7670 -0.5115 28 1 5.4187 2.8339 2.1114 29 1 11.5185 2.8705 1.8185 30 1 3.6995 4.6314 0.0025 31 1 1.2519 4.3903 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062056687.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:26 Heat of formation + Delta-G solvation = -125.749353 kcal Electronic energy + Delta-G solvation = -18358.922192 eV Core-core repulsion = 15151.970330 eV Total energy + Delta-G solvation = -3206.951861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63705 -39.07287 -37.43225 -36.52370 -36.13931 -35.15192 -32.97688 -31.67882 -28.33984 -28.23998 -26.95133 -24.40854 -22.75289 -21.05593 -19.41986 -19.08847 -18.14051 -18.06415 -17.22718 -16.99208 -16.83626 -16.59398 -15.94017 -15.48048 -15.36391 -15.10401 -14.39192 -14.19921 -13.95182 -13.77472 -13.29675 -13.02528 -12.98416 -12.59446 -12.51482 -12.47347 -12.42503 -12.26813 -12.13993 -11.22394 -11.01737 -10.79318 -10.69479 -10.25691 -9.50401 -8.73281 -7.46527 -0.02165 0.19610 0.48901 1.38401 1.38469 1.54634 2.11851 2.23733 2.60983 2.71335 3.08835 3.32848 3.59595 3.72645 3.98303 4.11876 4.20443 4.44828 4.45535 4.47357 4.56896 4.63326 4.76887 4.78738 4.89522 5.04150 5.31693 5.37111 5.46077 5.92606 6.24047 6.30969 6.80821 6.82000 8.23307 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.036116 B = 0.004420 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.099436 B = 6332.769388 C = 6747.810045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.325 6.325 3 C 0.303 3.697 4 C -0.192 4.192 5 C -0.018 4.018 6 C 0.158 3.842 7 N -1.117 6.117 8 S 2.720 3.280 9 O -1.044 7.044 10 O -1.042 7.042 11 C -1.037 5.037 12 H 0.128 0.872 13 C 0.068 3.932 14 N -0.896 5.896 15 Si 0.992 3.008 16 H -0.256 1.256 17 H -0.267 1.267 18 H -0.243 1.243 19 C -0.188 4.188 20 C 0.139 3.861 21 N -0.549 5.549 22 H 0.060 0.940 23 H 0.119 0.881 24 H 0.057 0.943 25 H 0.137 0.863 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.415 0.585 29 H 0.298 0.702 30 H 0.167 0.833 31 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.214 3.392 -6.452 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.233 6.233 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.027 4.027 6 C 0.033 3.967 7 N -0.875 5.875 8 S 2.821 3.179 9 O -1.034 7.034 10 O -1.032 7.032 11 C -1.171 5.171 12 H 0.146 0.854 13 C -0.144 4.144 14 N -0.527 5.527 15 Si 0.810 3.190 16 H -0.181 1.181 17 H -0.191 1.191 18 H -0.166 1.166 19 C -0.209 4.209 20 C -0.017 4.017 21 N -0.273 5.273 22 H 0.079 0.921 23 H 0.138 0.862 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.117 0.883 27 H 0.096 0.904 28 H 0.248 0.752 29 H 0.108 0.892 30 H 0.185 0.815 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -17.411 2.118 -6.052 18.554 hybrid contribution 1.111 0.828 -0.018 1.386 sum -16.300 2.946 -6.070 17.642 Atomic orbital electron populations 1.23058 0.75676 1.04569 1.02391 1.86232 1.24580 1.24575 1.87893 1.19890 0.89265 0.85271 0.93095 1.21134 0.92409 0.99697 1.08061 1.20127 0.95266 0.92866 0.94489 1.20221 0.89620 1.04084 0.82802 1.55391 1.27336 1.91265 1.13557 0.99901 0.70872 0.74936 0.72157 1.93318 1.85649 1.88911 1.35571 1.93307 1.82418 1.52436 1.75041 1.30886 1.04047 1.29927 1.52244 0.85433 1.26049 0.98170 0.99102 0.91117 1.70000 1.12445 1.33757 1.36516 0.85094 0.77272 0.76906 0.79682 1.18062 1.19098 1.16587 1.22284 0.94743 1.00017 1.03826 1.23018 0.93063 0.93992 0.91584 1.67368 1.41152 0.99268 1.19525 0.92137 0.86236 0.92414 0.84555 0.88298 0.90422 0.75178 0.89156 0.81530 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.83 16 2 O -0.33 -8.36 10.48 -89.95 -0.94 -9.30 16 3 C 0.30 8.22 7.49 84.80 0.63 8.86 16 4 C -0.19 -5.43 9.75 22.47 0.22 -5.21 16 5 C -0.02 -0.48 5.31 -19.69 -0.10 -0.59 16 6 C 0.16 4.96 6.40 85.63 0.55 5.51 16 7 N -1.12 -42.22 5.99 -190.79 -1.14 -43.36 16 8 S 2.72 142.67 5.02 -56.49 -0.28 142.39 16 9 O -1.04 -61.89 18.02 -128.00 -2.31 -64.19 16 10 O -1.04 -61.21 17.48 -128.00 -2.24 -63.44 16 11 C -1.04 -54.77 9.72 67.73 0.66 -54.12 16 12 H 0.13 5.86 7.81 -2.91 -0.02 5.83 16 13 C 0.07 3.71 5.46 84.65 0.46 4.17 16 14 N -0.90 -52.82 13.19 21.45 0.28 -52.54 16 15 Si 0.99 39.92 29.54 68.60 2.03 41.95 16 16 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 17 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 18 H -0.24 -8.92 7.11 99.48 0.71 -8.22 16 19 C -0.19 -3.86 9.81 22.36 0.22 -3.64 16 20 C 0.14 2.63 11.18 84.63 0.95 3.58 16 21 N -0.55 -13.18 9.22 -308.95 -2.85 -16.02 16 22 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 23 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 25 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 26 H 0.10 2.67 8.10 -2.39 -0.02 2.65 16 27 H 0.08 2.62 7.70 -2.39 -0.02 2.60 16 28 H 0.41 13.84 8.64 -96.74 -0.84 13.01 16 29 H 0.30 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -77.52 294.83 -2.36 -79.89 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.32 Total: 24.25 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 4.76 Total: -39.61 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -3.71 Total: -111.93 kcal Atomic # 8 Polarization: -131.45 SS G_CDS: -5.49 Total: -136.94 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: 142.67 SS G_CDS: -0.28 Total: 142.39 kcal Total: -77.52 -2.36 -79.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062056687.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.863 kcal (2) G-P(sol) polarization free energy of solvation -77.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds