Wall clock time and date at job start Mon Mar 30 2020 01:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42899 * 109.47327 * 2 1 4 4 C 1.35776 * 117.00360 * 180.02562 * 3 2 1 5 5 C 1.38886 * 119.60662 * 179.97438 * 4 3 2 6 6 C 1.38342 * 119.19249 * 180.02562 * 5 4 3 7 7 C 1.39391 * 118.41897 * 359.97118 * 6 5 4 8 8 N 1.39977 * 120.42601 * 180.02562 * 7 6 5 9 9 S 1.65600 * 120.00311 * 224.97979 * 8 7 6 10 10 O 1.42103 * 106.40232 * 178.54113 * 9 8 7 11 11 O 1.42098 * 106.39890 * 311.46097 * 9 8 7 12 12 C 1.76199 * 107.21554 * 65.00255 * 9 8 7 13 13 H 1.08002 * 120.00111 * 0.02562 * 12 9 8 14 14 C 1.37882 * 119.99571 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00293 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99667 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.47108 * 90.00148 * 16 14 12 18 18 H 1.48500 * 109.47430 * 209.99921 * 16 14 12 19 19 H 1.48496 * 109.47445 * 330.00397 * 16 14 12 20 20 C 1.38668 * 119.14524 * 0.02562 * 7 6 5 21 21 N 1.31974 * 120.73108 * 0.02562 * 20 7 6 22 22 H 1.09002 * 109.47164 * 299.99600 * 1 2 3 23 23 H 1.09001 * 109.47520 * 60.00053 * 1 2 3 24 24 H 1.08999 * 109.47033 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47164 * 240.00400 * 2 1 3 26 26 H 1.08997 * 109.47629 * 120.00705 * 2 1 3 27 27 H 1.07998 * 120.40550 * 0.03564 * 5 4 3 28 28 H 1.07991 * 120.79281 * 179.97438 * 6 5 4 29 29 H 0.97005 * 119.99572 * 44.98326 * 8 7 6 30 30 H 0.96996 * 119.99753 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.63762 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3523 1.5252 -0.0005 5 6 3.8743 2.8122 -0.0011 6 6 5.2471 2.9836 -0.0022 7 6 6.0572 1.8493 -0.0021 8 7 7.4514 1.9740 -0.0026 9 16 8.3662 1.0369 -1.0163 10 8 9.7184 1.4197 -0.8054 11 8 7.9022 -0.2967 -0.8576 12 6 7.9667 1.5099 -2.6659 13 1 7.2380 2.2870 -2.8435 14 6 8.5853 0.8886 -3.7301 15 7 9.4730 -0.0573 -3.5139 16 14 8.1613 1.3895 -5.4790 17 1 9.0656 2.4845 -5.9133 18 1 8.3276 0.2227 -6.3823 19 1 6.7538 1.8598 -5.5318 20 6 5.4642 0.5958 -0.0014 21 7 4.1503 0.4714 -0.0014 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.2166 3.6688 -0.0005 28 1 5.6808 3.9726 -0.0031 29 1 7.8818 2.6092 0.5909 30 1 9.9079 -0.4945 -4.2626 31 1 6.0843 -0.2884 -0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094989255.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:30 Heat of formation + Delta-G solvation = -95.878106 kcal Electronic energy + Delta-G solvation = -18753.458396 eV Core-core repulsion = 15547.801849 eV Total energy + Delta-G solvation = -3205.656547 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34523 -38.03230 -35.45239 -34.57401 -34.17473 -33.16207 -32.13082 -31.35041 -28.05308 -26.22108 -24.18878 -22.77234 -22.03505 -19.22359 -18.29194 -17.81924 -17.28896 -16.47222 -16.14278 -15.90291 -15.05649 -14.28856 -14.15293 -13.87833 -13.77031 -13.68967 -13.24400 -12.61380 -12.53563 -12.33463 -12.10698 -11.51660 -11.37245 -11.26187 -11.06070 -10.65900 -10.57796 -10.48851 -10.32569 -10.22232 -9.52296 -9.31750 -9.18406 -8.92585 -7.69450 -6.78565 -5.41819 1.43297 1.50642 2.12311 3.03291 3.10097 3.16988 3.21007 3.98960 4.05533 4.46269 4.56997 4.69134 5.01601 5.04654 5.19043 5.20662 5.28190 5.42877 5.58594 5.69002 5.82074 5.90741 5.96460 6.02587 6.27918 6.32903 6.76426 6.78904 7.24286 7.42399 7.67829 7.87840 8.18211 8.80597 10.15615 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.005887 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.886129 B = 4754.778931 C = 5332.191025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.313 6.313 4 C 0.292 3.708 5 C -0.175 4.175 6 C -0.067 4.067 7 C 0.091 3.909 8 N -1.068 6.068 9 S 2.704 3.296 10 O -0.995 6.995 11 O -0.995 6.995 12 C -1.016 5.016 13 H 0.103 0.897 14 C 0.134 3.866 15 N -0.843 5.843 16 Si 0.922 3.078 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.262 1.262 20 C 0.117 3.883 21 N -0.518 5.518 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.413 0.587 30 H 0.293 0.707 31 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.378 4.085 5.573 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.221 6.221 4 C 0.113 3.887 5 C -0.197 4.197 6 C -0.096 4.096 7 C -0.008 4.008 8 N -0.813 5.813 9 S 2.806 3.194 10 O -0.985 6.985 11 O -0.985 6.985 12 C -1.149 5.149 13 H 0.122 0.878 14 C -0.084 4.084 15 N -0.472 5.472 16 Si 0.745 3.255 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.186 1.186 20 C -0.042 4.042 21 N -0.241 5.241 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.246 0.754 30 H 0.103 0.897 31 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -12.237 2.497 5.717 13.735 hybrid contribution 0.158 1.560 -1.171 1.957 sum -12.079 4.056 4.546 13.528 Atomic orbital electron populations 1.21805 0.93446 1.02629 1.02996 1.22550 0.94268 0.81537 1.02704 1.86185 1.17120 1.30236 1.88537 1.19786 0.83904 0.90196 0.94830 1.20835 0.94993 0.95596 1.08229 1.21429 0.92212 0.98902 0.97102 1.18311 0.84427 0.94345 1.03737 1.53987 1.12122 1.59033 1.56160 1.00928 0.71547 0.72305 0.74656 1.93400 1.34343 1.83416 1.87345 1.93302 1.81186 1.36447 1.87561 1.30402 1.37040 1.33716 1.13788 0.87840 1.24730 0.90843 0.91202 1.01642 1.69876 1.21769 1.20096 1.35505 0.86134 0.79976 0.79033 0.80322 1.19066 1.19822 1.18620 1.23555 0.89289 0.97887 0.93489 1.67413 1.05936 1.32574 1.18157 0.91902 0.91814 0.90530 0.91542 0.91721 0.84280 0.83864 0.75382 0.89704 0.78952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.15 0.38 -1.00 16 2 C 0.06 0.82 6.03 37.15 0.22 1.04 16 3 O -0.31 -4.66 10.12 -19.04 -0.19 -4.86 16 4 C 0.29 4.86 7.49 -17.16 -0.13 4.74 16 5 C -0.18 -2.56 10.03 -39.30 -0.39 -2.96 16 6 C -0.07 -1.02 10.10 -39.11 -0.40 -1.41 16 7 C 0.09 1.69 6.24 -83.55 -0.52 1.16 16 8 N -1.07 -20.49 5.80 32.52 0.19 -20.30 16 9 S 2.70 68.73 4.95 -107.50 -0.53 68.20 16 10 O -0.99 -27.89 18.02 -57.17 -1.03 -28.92 16 11 O -1.00 -27.17 14.98 -57.17 -0.86 -28.03 16 12 C -1.02 -27.37 9.68 30.60 0.30 -27.08 16 13 H 0.10 2.60 7.81 -52.49 -0.41 2.19 16 14 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 15 N -0.84 -24.18 13.19 55.43 0.73 -23.45 16 16 Si 0.92 20.42 29.54 -169.99 -5.02 15.40 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 20 C 0.12 2.31 10.35 -17.33 -0.18 2.13 16 21 N -0.52 -9.62 9.20 -13.17 -0.12 -9.74 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 26 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 27 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.41 6.47 8.96 -34.47 -0.31 6.16 16 30 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.19 4.13 5.60 -52.49 -0.29 3.83 16 LS Contribution 290.21 15.07 4.37 4.37 Total: -1.00 -33.58 290.21 -6.38 -39.95 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -3.10 Total: 7.16 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -0.81 Total: -19.79 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.80 Total: -53.49 kcal Atomic # 8 Polarization: -59.73 SS G_CDS: -2.08 Total: -61.81 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 68.73 SS G_CDS: -0.53 Total: 68.20 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.58 -6.38 -39.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094989255.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.925 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds