Wall clock time and date at job start Mon Mar 30 2020 01:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42899 * 109.47327 * 2 1 4 4 C 1.35776 * 117.00360 * 180.02562 * 3 2 1 5 5 C 1.38886 * 119.60662 * 179.97438 * 4 3 2 6 6 C 1.38342 * 119.19249 * 180.02562 * 5 4 3 7 7 C 1.39391 * 118.41897 * 359.97118 * 6 5 4 8 8 N 1.39977 * 120.42601 * 180.02562 * 7 6 5 9 9 S 1.65600 * 120.00311 * 224.97979 * 8 7 6 10 10 O 1.42103 * 106.40232 * 178.54113 * 9 8 7 11 11 O 1.42098 * 106.39890 * 311.46097 * 9 8 7 12 12 C 1.76199 * 107.21554 * 65.00255 * 9 8 7 13 13 H 1.08002 * 120.00111 * 0.02562 * 12 9 8 14 14 C 1.37882 * 119.99571 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00293 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99667 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.47108 * 90.00148 * 16 14 12 18 18 H 1.48500 * 109.47430 * 209.99921 * 16 14 12 19 19 H 1.48496 * 109.47445 * 330.00397 * 16 14 12 20 20 C 1.38668 * 119.14524 * 0.02562 * 7 6 5 21 21 N 1.31974 * 120.73108 * 0.02562 * 20 7 6 22 22 H 1.09002 * 109.47164 * 299.99600 * 1 2 3 23 23 H 1.09001 * 109.47520 * 60.00053 * 1 2 3 24 24 H 1.08999 * 109.47033 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47164 * 240.00400 * 2 1 3 26 26 H 1.08997 * 109.47629 * 120.00705 * 2 1 3 27 27 H 1.07998 * 120.40550 * 0.03564 * 5 4 3 28 28 H 1.07991 * 120.79281 * 179.97438 * 6 5 4 29 29 H 0.97005 * 119.99572 * 44.98326 * 8 7 6 30 30 H 0.96996 * 119.99753 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.63762 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3523 1.5252 -0.0005 5 6 3.8743 2.8122 -0.0011 6 6 5.2471 2.9836 -0.0022 7 6 6.0572 1.8493 -0.0021 8 7 7.4514 1.9740 -0.0026 9 16 8.3662 1.0369 -1.0163 10 8 9.7184 1.4197 -0.8054 11 8 7.9022 -0.2967 -0.8576 12 6 7.9667 1.5099 -2.6659 13 1 7.2380 2.2870 -2.8435 14 6 8.5853 0.8886 -3.7301 15 7 9.4730 -0.0573 -3.5139 16 14 8.1613 1.3895 -5.4790 17 1 9.0656 2.4845 -5.9133 18 1 8.3276 0.2227 -6.3823 19 1 6.7538 1.8598 -5.5318 20 6 5.4642 0.5958 -0.0014 21 7 4.1503 0.4714 -0.0014 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.2166 3.6688 -0.0005 28 1 5.6808 3.9726 -0.0031 29 1 7.8818 2.6092 0.5909 30 1 9.9079 -0.4945 -4.2626 31 1 6.0843 -0.2884 -0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094989255.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:30 Heat of formation + Delta-G solvation = -123.916743 kcal Electronic energy + Delta-G solvation = -18754.674243 eV Core-core repulsion = 15547.801849 eV Total energy + Delta-G solvation = -3206.872393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64385 -39.27057 -37.52258 -36.28442 -36.05716 -35.19506 -33.34442 -32.37993 -29.42376 -28.30218 -25.37889 -24.06926 -23.15487 -21.16959 -19.70794 -19.42438 -18.81033 -18.33456 -17.45495 -17.22925 -16.98697 -16.00694 -15.73423 -15.56831 -15.03735 -14.86835 -14.46452 -14.05297 -14.02423 -13.46534 -13.40294 -13.31563 -13.04009 -12.70694 -12.61740 -12.45845 -12.34918 -12.34746 -12.02438 -11.53095 -11.27508 -11.02178 -10.76532 -10.49312 -9.12697 -8.77916 -7.53023 -0.05781 0.18204 0.38960 1.31999 1.32691 1.48400 2.07318 2.17375 2.54424 2.68789 2.77816 3.35001 3.58623 3.82551 4.05709 4.09378 4.12075 4.21728 4.33128 4.51020 4.60992 4.71885 4.90637 4.98278 4.99219 5.20868 5.23535 5.30530 5.46047 5.84348 6.12107 6.32147 6.74326 6.82874 8.16712 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.005887 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.886129 B = 4754.778931 C = 5332.191025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 O -0.311 6.311 4 C 0.284 3.716 5 C -0.160 4.160 6 C -0.051 4.051 7 C 0.070 3.930 8 N -1.050 6.050 9 S 2.714 3.286 10 O -1.030 7.030 11 O -1.025 7.025 12 C -1.036 5.036 13 H 0.118 0.882 14 C 0.074 3.926 15 N -0.889 5.889 16 Si 0.987 3.013 17 H -0.250 1.250 18 H -0.262 1.262 19 H -0.253 1.253 20 C 0.090 3.910 21 N -0.536 5.536 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.181 0.819 28 H 0.184 0.816 29 H 0.429 0.571 30 H 0.300 0.700 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 6.340 4.909 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.219 6.219 4 C 0.103 3.897 5 C -0.181 4.181 6 C -0.080 4.080 7 C -0.029 4.029 8 N -0.801 5.801 9 S 2.816 3.184 10 O -1.020 7.020 11 O -1.015 7.015 12 C -1.170 5.170 13 H 0.136 0.864 14 C -0.140 4.140 15 N -0.520 5.520 16 Si 0.805 3.195 17 H -0.174 1.174 18 H -0.186 1.186 19 H -0.176 1.176 20 C -0.068 4.068 21 N -0.260 5.260 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.198 0.802 28 H 0.201 0.799 29 H 0.267 0.733 30 H 0.111 0.889 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.423 4.753 5.080 16.013 hybrid contribution 0.690 0.863 -0.858 1.399 sum -13.733 5.616 4.223 15.426 Atomic orbital electron populations 1.21804 0.90416 1.04181 1.03575 1.22781 0.96615 0.80508 1.01892 1.86212 1.16029 1.31462 1.88192 1.20243 0.84460 0.90733 0.94235 1.21305 0.95233 0.95934 1.05648 1.21826 0.92060 0.99323 0.94770 1.18443 0.83793 0.95124 1.05583 1.53182 1.12538 1.58838 1.55566 1.00304 0.71086 0.72159 0.74843 1.93343 1.36822 1.83953 1.87898 1.93275 1.81531 1.38693 1.87983 1.30778 1.37317 1.34093 1.14813 0.86425 1.25934 0.90424 0.90920 1.06673 1.69960 1.23187 1.21545 1.37308 0.85173 0.80323 0.79449 0.74564 1.17411 1.18625 1.17628 1.23203 0.89851 0.97888 0.95904 1.67303 1.05549 1.34090 1.19068 0.91037 0.91437 0.88533 0.92861 0.92160 0.80202 0.79906 0.73316 0.88939 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.06 1.38 6.03 71.98 0.43 1.81 16 3 O -0.31 -8.66 10.12 -91.04 -0.92 -9.58 16 4 C 0.28 8.94 7.49 84.79 0.63 9.58 16 5 C -0.16 -4.10 10.03 22.45 0.23 -3.87 16 6 C -0.05 -1.38 10.10 22.57 0.23 -1.15 16 7 C 0.07 2.51 6.24 38.22 0.24 2.75 16 8 N -1.05 -40.07 5.80 -51.03 -0.30 -40.36 16 9 S 2.71 141.24 4.95 -56.49 -0.28 140.96 16 10 O -1.03 -59.27 18.02 -128.00 -2.31 -61.58 16 11 O -1.03 -58.57 14.98 -128.00 -1.92 -60.49 16 12 C -1.04 -56.00 9.68 67.74 0.66 -55.34 16 13 H 0.12 5.79 7.81 -2.91 -0.02 5.77 16 14 C 0.07 4.06 5.46 84.66 0.46 4.53 16 15 N -0.89 -51.99 13.19 21.45 0.28 -51.71 16 16 Si 0.99 40.93 29.54 68.60 2.03 42.95 16 17 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 20 C 0.09 3.64 10.35 84.77 0.88 4.51 16 21 N -0.54 -20.02 9.20 -308.42 -2.84 -22.86 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 26 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 27 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 28 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.43 13.08 8.96 -96.74 -0.87 12.22 16 30 H 0.30 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.17 7.52 5.60 -2.91 -0.02 7.51 16 Total: -1.00 -74.70 290.21 -1.45 -76.16 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.30 Total: 25.24 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 4.50 Total: -38.72 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -2.85 Total: -114.94 kcal Atomic # 8 Polarization: -126.51 SS G_CDS: -5.14 Total: -131.65 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 141.24 SS G_CDS: -0.28 Total: 140.96 kcal Total: -74.70 -1.45 -76.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094989255.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.762 kcal (2) G-P(sol) polarization free energy of solvation -74.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds